+require 'arvados/keep'
+
class Collection < ArvadosModel
include HasUuid
include KindAndEtag
include CommonApiTemplate
+ before_validation :check_encoding
+ before_validation :check_signatures
+ before_validation :strip_manifest_text
+ before_validation :set_portable_data_hash
+ validate :ensure_hash_matches_manifest_text
+
+ # Query only undeleted collections by default.
+ default_scope where("expires_at IS NULL or expires_at > CURRENT_TIMESTAMP")
+
api_accessible :user, extend: :common do |t|
- t.add :data_size
- t.add :files
+ t.add :name
+ t.add :description
+ t.add :properties
+ t.add :portable_data_hash
t.add :manifest_text
end
- def self.attributes_required_columns
- super.merge({ "data_size" => ["manifest_text"],
- "files" => ["manifest_text"],
- })
+ def check_signatures
+ return false if self.manifest_text.nil?
+
+ return true if current_user.andand.is_admin
+
+ if self.manifest_text_changed?
+ # Check permissions on the collection manifest.
+ # If any signature cannot be verified, raise PermissionDeniedError
+ # which will return 403 Permission denied to the client.
+ api_token = current_api_client_authorization.andand.api_token
+ signing_opts = {
+ key: Rails.configuration.blob_signing_key,
+ api_token: api_token,
+ ttl: Rails.configuration.blob_signing_ttl,
+ }
+ self.manifest_text.lines.each do |entry|
+ entry.split[1..-1].each do |tok|
+ if /^[[:digit:]]+:[[:digit:]]+:/.match tok
+ # This is a filename token, not a blob locator. Note that we
+ # keep checking tokens after this, even though manifest
+ # format dictates that all subsequent tokens will also be
+ # filenames. Safety first!
+ elsif Blob.verify_signature tok, signing_opts
+ # OK.
+ elsif Keep::Locator.parse(tok).andand.signature
+ # Signature provided, but verify_signature did not like it.
+ logger.warn "Invalid signature on locator #{tok}"
+ raise ArvadosModel::PermissionDeniedError
+ elsif Rails.configuration.permit_create_collection_with_unsigned_manifest
+ # No signature provided, but we are running in insecure mode.
+ logger.debug "Missing signature on locator #{tok} ignored"
+ elsif Blob.new(tok).empty?
+ # No signature provided -- but no data to protect, either.
+ else
+ logger.warn "Missing signature on locator #{tok}"
+ raise ArvadosModel::PermissionDeniedError
+ end
+ end
+ end
+ end
+ true
end
- def redundancy_status
- if redundancy_confirmed_as.nil?
- 'unconfirmed'
- elsif redundancy_confirmed_as < redundancy
- 'degraded'
- else
- if redundancy_confirmed_at.nil?
- 'unconfirmed'
- elsif Time.now - redundancy_confirmed_at < 7.days
- 'OK'
- else
- 'stale'
+ def strip_manifest_text
+ if self.manifest_text_changed?
+ # Remove any permission signatures from the manifest.
+ Collection.munge_manifest_locators(self[:manifest_text]) do |loc|
+ loc.without_signature.to_s
end
end
+ true
end
- def assign_uuid
- if not self.manifest_text
- errors.add :manifest_text, 'not supplied'
- return false
- end
- expect_uuid = Digest::MD5.hexdigest(self.manifest_text)
- if self.uuid
- self.uuid.gsub! /\+.*/, ''
- if self.uuid != expect_uuid
- errors.add :uuid, 'must match checksum of manifest_text'
+ def set_portable_data_hash
+ if (self.portable_data_hash.nil? or (self.portable_data_hash == "") or (manifest_text_changed? and !portable_data_hash_changed?))
+ self.portable_data_hash = "#{Digest::MD5.hexdigest(manifest_text)}+#{manifest_text.length}"
+ elsif portable_data_hash_changed?
+ begin
+ loc = Keep::Locator.parse!(self.portable_data_hash)
+ loc.strip_hints!
+ if loc.size
+ self.portable_data_hash = loc.to_s
+ else
+ self.portable_data_hash = "#{loc.hash}+#{self.manifest_text.length}"
+ end
+ rescue ArgumentError => e
+ errors.add(:portable_data_hash, "#{e}")
return false
end
- else
- self.uuid = expect_uuid
end
- self.uuid.gsub! /$/, '+' + self.manifest_text.length.to_s
true
end
- # TODO (#3036/tom) replace above assign_uuid method with below assign_uuid and self.generate_uuid
- # def assign_uuid
- # # Even admins cannot assign collection uuids.
- # self.uuid = self.class.generate_uuid
- # end
- # def self.generate_uuid
- # # The last 10 characters of a collection uuid are the last 10
- # # characters of the base-36 SHA256 digest of manifest_text.
- # [Server::Application.config.uuid_prefix,
- # self.uuid_prefix,
- # rand(2**256).to_s(36)[-5..-1] + Digest::SHA256.hexdigest(self.manifest_text).to_i(16).to_s(36)[-10..-1],
- # ].join '-'
- # end
-
- def data_size
- inspect_manifest_text if @data_size.nil? or manifest_text_changed?
- @data_size
- end
-
- def files
- inspect_manifest_text if @files.nil? or manifest_text_changed?
- @files
+ def ensure_hash_matches_manifest_text
+ if manifest_text_changed? or portable_data_hash_changed?
+ computed_hash = "#{Digest::MD5.hexdigest(manifest_text)}+#{manifest_text.length}"
+ unless computed_hash == portable_data_hash
+ logger.debug "(computed) '#{computed_hash}' != '#{portable_data_hash}' (provided)"
+ errors.add(:portable_data_hash, "does not match hash of manifest_text")
+ return false
+ end
+ end
+ true
end
- def inspect_manifest_text
- if !manifest_text
- @data_size = false
- @files = []
- return
+ def check_encoding
+ if manifest_text.encoding.name == 'UTF-8' and manifest_text.valid_encoding?
+ true
+ else
+ errors.add :manifest_text, "must use UTF-8 encoding"
+ false
end
+ end
- @data_size = 0
- tmp = {}
-
- manifest_text.split("\n").each do |stream|
- toks = stream.split(" ")
-
- stream = toks[0].gsub /\\(\\|[0-7]{3})/ do |escape_sequence|
- case $1
- when '\\' '\\'
- else $1.to_i(8).chr
- end
- end
-
- toks[1..-1].each do |tok|
- if (re = tok.match /^[0-9a-f]{32}/)
- blocksize = nil
- tok.split('+')[1..-1].each do |hint|
- if !blocksize and hint.match /^\d+$/
- blocksize = hint.to_i
- end
- if (re = hint.match /^GS(\d+)$/)
- blocksize = re[1].to_i
- end
- end
- @data_size = false if !blocksize
- @data_size += blocksize if @data_size
- else
- if (re = tok.match /^(\d+):(\d+):(\S+)$/)
- filename = re[3].gsub /\\(\\|[0-7]{3})/ do |escape_sequence|
- case $1
- when '\\' '\\'
- else $1.to_i(8).chr
- end
- end
- fn = stream + '/' + filename
- i = re[2].to_i
- if tmp[fn]
- tmp[fn] += i
- else
- tmp[fn] = i
- end
- end
- end
+ def redundancy_status
+ if redundancy_confirmed_as.nil?
+ 'unconfirmed'
+ elsif redundancy_confirmed_as < redundancy
+ 'degraded'
+ else
+ if redundancy_confirmed_at.nil?
+ 'unconfirmed'
+ elsif Time.now - redundancy_confirmed_at < 7.days
+ 'OK'
+ else
+ 'stale'
end
end
-
- @files = []
- tmp.each do |k, v|
- re = k.match(/^(.+)\/(.+)/)
- @files << [re[1], re[2], v]
- end
end
- def self.uuid_like_pattern
- "________________________________+%"
+ def self.munge_manifest_locators(manifest)
+ # Given a manifest text and a block, yield each locator,
+ # and replace it with whatever the block returns.
+ manifest.andand.gsub!(/ [[:xdigit:]]{32}(\+[[:digit:]]+)?(\+\S+)/) do |word|
+ if loc = Keep::Locator.parse(word.strip)
+ " " + yield(loc)
+ else
+ " " + word
+ end
+ end
end
def self.normalize_uuid uuid
[hash_part, size_part].compact.join '+'
end
- def self.uuids_for_docker_image(search_term, search_tag=nil, readers=nil)
+ # Return array of Collection objects
+ def self.find_all_for_docker_image(search_term, search_tag=nil, readers=nil)
readers ||= [Thread.current[:user]]
base_search = Link.
readable_by(*readers).
# If the search term is a Collection locator that contains one file
# that looks like a Docker image, return it.
- if loc = Locator.parse(search_term)
+ if loc = Keep::Locator.parse(search_term)
loc.strip_hints!
- coll_match = readable_by(*readers).where(uuid: loc.to_s).first
- if coll_match and (coll_match.files.size == 1) and
- (coll_match.files[0][1] =~ /^[0-9A-Fa-f]{64}\.tar$/)
- return [loc.to_s]
+ coll_match = readable_by(*readers).where(portable_data_hash: loc.to_s).limit(1).first
+ if coll_match
+ # Check if the Collection contains exactly one file whose name
+ # looks like a saved Docker image.
+ manifest = Keep::Manifest.new(coll_match.manifest_text)
+ if manifest.exact_file_count?(1) and
+ (manifest.files[0][1] =~ /^[0-9A-Fa-f]{64}\.tar$/)
+ return [coll_match]
+ end
end
end
+ if search_tag.nil? and (n = search_term.index(":"))
+ search_tag = search_term[n+1..-1]
+ search_term = search_term[0..n-1]
+ end
+
# Find Collections with matching Docker image repository+tag pairs.
matches = base_search.
where(link_class: "docker_image_repo+tag",
# If that didn't work, find Collections with matching Docker image hashes.
if matches.empty?
matches = base_search.
- where("link_class = ? and name LIKE ?",
+ where("link_class = ? and links.name LIKE ?",
"docker_image_hash", "#{search_term}%")
end
# so that anything with an image timestamp is considered more recent than
# anything without; then we use the link's created_at as a tiebreaker.
uuid_timestamps = {}
- matches.find_each do |link|
- uuid_timestamps[link.head_uuid] =
- [(-link.properties["image_timestamp"].to_datetime.to_i rescue 0),
- -link.created_at.to_i]
+ matches.all.map do |link|
+ uuid_timestamps[link.head_uuid] = [(-link.properties["image_timestamp"].to_datetime.to_i rescue 0),
+ -link.created_at.to_i]
end
- uuid_timestamps.keys.sort_by { |uuid| uuid_timestamps[uuid] }
+ Collection.where('uuid in (?)', uuid_timestamps.keys).sort_by { |c| uuid_timestamps[c.uuid] }
end
def self.for_latest_docker_image(search_term, search_tag=nil, readers=nil)
- image_uuid = uuids_for_docker_image(search_term, search_tag, readers).first
- if image_uuid.nil?
- nil
- else
- find_by_uuid(image_uuid)
- end
+ find_all_for_docker_image(search_term, search_tag, readers).first
end
end
projects / arvados.git / blobdiff