-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{Arvados}
-\alias{Arvados}
-\title{Arvados}
-\description{
-Arvados class gives users ability to access Arvados REST API.
-}
-\section{Usage}{
-
-\preformatted{arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)}
-}
-
-\section{Arguments}{
-
-\describe{
- \item{authToken}{Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.}
- \item{hostName}{Host name. If not specified ARVADOS_API_HOST environment variable will be used.}
- \item{numRetries}{Number which specifies how many times to retry failed service requests.}
-}
-}
-
-\section{Methods}{
-
-\describe{
- \item{}{\code{\link{api_client_authorizations.create}}}
- \item{}{\code{\link{api_client_authorizations.create_system_auth}}}
- \item{}{\code{\link{api_client_authorizations.current}}}
- \item{}{\code{\link{api_client_authorizations.delete}}}
- \item{}{\code{\link{api_client_authorizations.get}}}
- \item{}{\code{\link{api_client_authorizations.list}}}
- \item{}{\code{\link{api_client_authorizations.update}}}
- \item{}{\code{\link{api_clients.create}}}
- \item{}{\code{\link{api_clients.delete}}}
- \item{}{\code{\link{api_clients.get}}}
- \item{}{\code{\link{api_clients.list}}}
- \item{}{\code{\link{api_clients.update}}}
- \item{}{\code{\link{authorized_keys.create}}}
- \item{}{\code{\link{authorized_keys.delete}}}
- \item{}{\code{\link{authorized_keys.get}}}
- \item{}{\code{\link{authorized_keys.list}}}
- \item{}{\code{\link{authorized_keys.update}}}
- \item{}{\code{\link{collections.create}}}
- \item{}{\code{\link{collections.delete}}}
- \item{}{\code{\link{collections.get}}}
- \item{}{\code{\link{collections.list}}}
- \item{}{\code{\link{collections.provenance}}}
- \item{}{\code{\link{collections.trash}}}
- \item{}{\code{\link{collections.untrash}}}
- \item{}{\code{\link{collections.update}}}
- \item{}{\code{\link{collections.used_by}}}
- \item{}{\code{\link{container_requests.create}}}
- \item{}{\code{\link{container_requests.delete}}}
- \item{}{\code{\link{container_requests.get}}}
- \item{}{\code{\link{container_requests.list}}}
- \item{}{\code{\link{container_requests.update}}}
- \item{}{\code{\link{containers.auth}}}
- \item{}{\code{\link{containers.create}}}
- \item{}{\code{\link{containers.current}}}
- \item{}{\code{\link{containers.delete}}}
- \item{}{\code{\link{containers.get}}}
- \item{}{\code{\link{containers.list}}}
- \item{}{\code{\link{containers.lock}}}
- \item{}{\code{\link{containers.secret_mounts}}}
- \item{}{\code{\link{containers.unlock}}}
- \item{}{\code{\link{containers.update}}}
- \item{}{\code{\link{groups.contents}}}
- \item{}{\code{\link{groups.create}}}
- \item{}{\code{\link{groups.delete}}}
- \item{}{\code{\link{groups.get}}}
- \item{}{\code{\link{groups.list}}}
- \item{}{\code{\link{groups.trash}}}
- \item{}{\code{\link{groups.untrash}}}
- \item{}{\code{\link{groups.update}}}
- \item{}{\code{\link{humans.create}}}
- \item{}{\code{\link{humans.delete}}}
- \item{}{\code{\link{humans.get}}}
- \item{}{\code{\link{humans.list}}}
- \item{}{\code{\link{humans.update}}}
- \item{}{\code{\link{jobs.cancel}}}
- \item{}{\code{\link{jobs.create}}}
- \item{}{\code{\link{jobs.delete}}}
- \item{}{\code{\link{jobs.get}}}
- \item{}{\code{\link{jobs.list}}}
- \item{}{\code{\link{jobs.lock}}}
- \item{}{\code{\link{jobs.queue}}}
- \item{}{\code{\link{jobs.queue_size}}}
- \item{}{\code{\link{jobs.update}}}
- \item{}{\code{\link{job_tasks.create}}}
- \item{}{\code{\link{job_tasks.delete}}}
- \item{}{\code{\link{job_tasks.get}}}
- \item{}{\code{\link{job_tasks.list}}}
- \item{}{\code{\link{job_tasks.update}}}
- \item{}{\code{\link{keep_disks.create}}}
- \item{}{\code{\link{keep_disks.delete}}}
- \item{}{\code{\link{keep_disks.get}}}
- \item{}{\code{\link{keep_disks.list}}}
- \item{}{\code{\link{keep_disks.ping}}}
- \item{}{\code{\link{keep_disks.update}}}
- \item{}{\code{\link{keep_services.accessible}}}
- \item{}{\code{\link{keep_services.create}}}
- \item{}{\code{\link{keep_services.delete}}}
- \item{}{\code{\link{keep_services.get}}}
- \item{}{\code{\link{keep_services.list}}}
- \item{}{\code{\link{keep_services.update}}}
- \item{}{\code{\link{links.create}}}
- \item{}{\code{\link{links.delete}}}
- \item{}{\code{\link{links.get}}}
- \item{}{\code{\link{links.get_permissions}}}
- \item{}{\code{\link{links.list}}}
- \item{}{\code{\link{links.update}}}
- \item{}{\code{\link{logs.create}}}
- \item{}{\code{\link{logs.delete}}}
- \item{}{\code{\link{logs.get}}}
- \item{}{\code{\link{logs.list}}}
- \item{}{\code{\link{logs.update}}}
- \item{}{\code{\link{nodes.create}}}
- \item{}{\code{\link{nodes.delete}}}
- \item{}{\code{\link{nodes.get}}}
- \item{}{\code{\link{nodes.list}}}
- \item{}{\code{\link{nodes.ping}}}
- \item{}{\code{\link{nodes.update}}}
- \item{}{\code{\link{pipeline_instances.cancel}}}
- \item{}{\code{\link{pipeline_instances.create}}}
- \item{}{\code{\link{pipeline_instances.delete}}}
- \item{}{\code{\link{pipeline_instances.get}}}
- \item{}{\code{\link{pipeline_instances.list}}}
- \item{}{\code{\link{pipeline_instances.update}}}
- \item{}{\code{\link{pipeline_templates.create}}}
- \item{}{\code{\link{pipeline_templates.delete}}}
- \item{}{\code{\link{pipeline_templates.get}}}
- \item{}{\code{\link{pipeline_templates.list}}}
- \item{}{\code{\link{pipeline_templates.update}}}
- \item{}{\code{\link{projects.create}}}
- \item{}{\code{\link{projects.delete}}}
- \item{}{\code{\link{projects.get}}}
- \item{}{\code{\link{projects.list}}}
- \item{}{\code{\link{projects.update}}}
- \item{}{\code{\link{repositories.create}}}
- \item{}{\code{\link{repositories.delete}}}
- \item{}{\code{\link{repositories.get}}}
- \item{}{\code{\link{repositories.get_all_permissions}}}
- \item{}{\code{\link{repositories.list}}}
- \item{}{\code{\link{repositories.update}}}
- \item{}{\code{\link{specimens.create}}}
- \item{}{\code{\link{specimens.delete}}}
- \item{}{\code{\link{specimens.get}}}
- \item{}{\code{\link{specimens.list}}}
- \item{}{\code{\link{specimens.update}}}
- \item{}{\code{\link{traits.create}}}
- \item{}{\code{\link{traits.delete}}}
- \item{}{\code{\link{traits.get}}}
- \item{}{\code{\link{traits.list}}}
- \item{}{\code{\link{traits.update}}}
- \item{}{\code{\link{user_agreements.create}}}
- \item{}{\code{\link{user_agreements.delete}}}
- \item{}{\code{\link{user_agreements.get}}}
- \item{}{\code{\link{user_agreements.list}}}
- \item{}{\code{\link{user_agreements.new}}}
- \item{}{\code{\link{user_agreements.sign}}}
- \item{}{\code{\link{user_agreements.signatures}}}
- \item{}{\code{\link{user_agreements.update}}}
- \item{}{\code{\link{users.activate}}}
- \item{}{\code{\link{users.create}}}
- \item{}{\code{\link{users.current}}}
- \item{}{\code{\link{users.delete}}}
- \item{}{\code{\link{users.get}}}
- \item{}{\code{\link{users.list}}}
- \item{}{\code{\link{users.merge}}}
- \item{}{\code{\link{users.setup}}}
- \item{}{\code{\link{users.system}}}
- \item{}{\code{\link{users.unsetup}}}
- \item{}{\code{\link{users.update}}}
- \item{}{\code{\link{virtual_machines.create}}}
- \item{}{\code{\link{virtual_machines.delete}}}
- \item{}{\code{\link{virtual_machines.get}}}
- \item{}{\code{\link{virtual_machines.get_all_logins}}}
- \item{}{\code{\link{virtual_machines.list}}}
- \item{}{\code{\link{virtual_machines.logins}}}
- \item{}{\code{\link{virtual_machines.update}}}
- \item{}{\code{\link{workflows.create}}}
- \item{}{\code{\link{workflows.delete}}}
- \item{}{\code{\link{workflows.get}}}
- \item{}{\code{\link{workflows.list}}}
- \item{}{\code{\link{workflows.update}}}
-}
-}
-
-\examples{
-\dontrun{
-arv <- Arvados$new("your Arvados token", "example.arvadosapi.com")
-
-collection <- arv$collections.get("uuid")
-
-collectionList <- arv$collections.list(list(list("name", "like", "Test\%")))
-collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test\%")))
-
-deletedCollection <- arv$collections.delete("uuid")
-
-updatedCollection <- arv$collections.update(list(name = "New name", description = "New description"),
- "uuid")
-
-createdCollection <- arv$collections.create(list(name = "Example",
- description = "This is a test collection"))
-}
-}
+% Generated by roxygen2: do not edit by hand\r
+% Please edit documentation in R/Arvados.R\r
+\name{Arvados}\r
+\alias{Arvados}\r
+\title{R6 Class Representing a Arvados}\r
+\description{\r
+Arvados class gives users ability to access Arvados REST API. It also allowes user to manipulate collections (and projects?)\r
+}\r
+\examples{\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$new`\r
+## ------------------------------------------------\r
+\r
+arv <- Arvados$new(authToken = "ARVADOS_API_TOKEN", hostName = "ARVADOS_API_HOST", numRetries = 3)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_exist`\r
+## ------------------------------------------------\r
+\r
+arv$project_exist(uuid = projectUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_get`\r
+## ------------------------------------------------\r
+\r
+project <- arv$project_get(uuid = projectUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_create`\r
+## ------------------------------------------------\r
+\r
+Properties <- list() # should contain a list of new properties to be added\r
+new_project <- arv$project_create(name = "project name", description = "project description", owner_uuid = "project UUID", properties = NULL, ensureUniqueName = "false")\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_properties_set`\r
+## ------------------------------------------------\r
+\r
+Properties <- list() # should contain a list of new properties to be added\r
+arv$project_properties_set(Properties, uuid)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_properties_append`\r
+## ------------------------------------------------\r
+\r
+newProperties <- list() # should contain a list of new properties to be added\r
+arv$project_properties_append(properties = newProperties, uuid)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_properties_get`\r
+## ------------------------------------------------\r
+\r
+arv$project_properties_get(projectUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_properties_delete`\r
+## ------------------------------------------------\r
+\r
+Properties <- list() # should contain a list of new properties to be added\r
+arv$project_properties_delete(Properties, projectUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_update`\r
+## ------------------------------------------------\r
+\r
+newProperties <- list() # should contain a list of new properties to be added\r
+arv$project_update(name = "new project name", properties = newProperties, uuid = projectUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_list`\r
+## ------------------------------------------------\r
+\r
+listOfprojects <- arv$project_list(list(list("owner_uuid", "=", projectUUID))) # Sample query which show projects within the project of a given UUID\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_create`\r
+## ------------------------------------------------\r
+\r
+Properties <- list() # should contain a list of new properties to be added\r
+arv$collections_create(name = "collectionTitle", description = "collectionDescription", ownerUUID = "collectionOwner", properties = Properties)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_update`\r
+## ------------------------------------------------\r
+\r
+collection <- arv$collections_create(name = "newCollectionTitle", description = "newCollectionDescription", ownerUUID = "collectionOwner", properties = NULL)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_delete`\r
+## ------------------------------------------------\r
+\r
+arv$collection_delete(collectionUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_provenance`\r
+## ------------------------------------------------\r
+\r
+collection <- arv$collections_provenance(collectionUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_trash`\r
+## ------------------------------------------------\r
+\r
+arv$collections_trash(collectionUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_untrash`\r
+## ------------------------------------------------\r
+\r
+arv$collections_untrash(collectionUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$collections_list`\r
+## ------------------------------------------------\r
+\r
+collectionList <- arv$collections.list(list(list("name", "=", "Example")))\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_permission_give`\r
+## ------------------------------------------------\r
+\r
+arv$project_permission_give(type = "can_read", uuid = objectUUID, user = userUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_permission_refuse`\r
+## ------------------------------------------------\r
+\r
+arv$project_permission_refuse(type = "can_read", uuid = objectUUID, user = userUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_permission_update`\r
+## ------------------------------------------------\r
+\r
+arv$project_permission_update(typeOld = "can_read", typeNew = "can_write", uuid = objectUUID, user = userUUID)\r
+\r
+## ------------------------------------------------\r
+## Method `Arvados$project_permission_check`\r
+## ------------------------------------------------\r
+\r
+arv$project_permission_check(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
+\section{Methods}{\r
+\subsection{Public methods}{\r
+\itemize{\r
+\item \href{#method-new}{\code{Arvados$new()}}\r
+\item \href{#method-project_exist}{\code{Arvados$project_exist()}}\r
+\item \href{#method-project_get}{\code{Arvados$project_get()}}\r
+\item \href{#method-project_create}{\code{Arvados$project_create()}}\r
+\item \href{#method-project_properties_set}{\code{Arvados$project_properties_set()}}\r
+\item \href{#method-project_properties_append}{\code{Arvados$project_properties_append()}}\r
+\item \href{#method-project_properties_get}{\code{Arvados$project_properties_get()}}\r
+\item \href{#method-project_properties_delete}{\code{Arvados$project_properties_delete()}}\r
+\item \href{#method-project_update}{\code{Arvados$project_update()}}\r
+\item \href{#method-project_list}{\code{Arvados$project_list()}}\r
+\item \href{#method-project_delete}{\code{Arvados$project_delete()}}\r
+\item \href{#method-api_clients_get}{\code{Arvados$api_clients_get()}}\r
+\item \href{#method-api_clients_create}{\code{Arvados$api_clients_create()}}\r
+\item \href{#method-api_clients_update}{\code{Arvados$api_clients_update()}}\r
+\item \href{#method-api_clients_delete}{\code{Arvados$api_clients_delete()}}\r
+\item \href{#method-api_clients_list}{\code{Arvados$api_clients_list()}}\r
+\item \href{#method-api_client_authorizations_get}{\code{Arvados$api_client_authorizations_get()}}\r
+\item \href{#method-api_client_authorizations_create}{\code{Arvados$api_client_authorizations_create()}}\r
+\item \href{#method-api_client_authorizations_update}{\code{Arvados$api_client_authorizations_update()}}\r
+\item \href{#method-api_client_authorizations_delete}{\code{Arvados$api_client_authorizations_delete()}}\r
+\item \href{#method-api_client_authorizations_create_system_auth}{\code{Arvados$api_client_authorizations_create_system_auth()}}\r
+\item \href{#method-api_client_authorizations_current}{\code{Arvados$api_client_authorizations_current()}}\r
+\item \href{#method-api_client_authorizations_list}{\code{Arvados$api_client_authorizations_list()}}\r
+\item \href{#method-authorized_keys_get}{\code{Arvados$authorized_keys_get()}}\r
+\item \href{#method-authorized_keys_create}{\code{Arvados$authorized_keys_create()}}\r
+\item \href{#method-authorized_keys_update}{\code{Arvados$authorized_keys_update()}}\r
+\item \href{#method-authorized_keys_delete}{\code{Arvados$authorized_keys_delete()}}\r
+\item \href{#method-authorized_keys_list}{\code{Arvados$authorized_keys_list()}}\r
+\item \href{#method-collections_get}{\code{Arvados$collections_get()}}\r
+\item \href{#method-collections_create}{\code{Arvados$collections_create()}}\r
+\item \href{#method-collections_update}{\code{Arvados$collections_update()}}\r
+\item \href{#method-collections_delete}{\code{Arvados$collections_delete()}}\r
+\item \href{#method-collections_provenance}{\code{Arvados$collections_provenance()}}\r
+\item \href{#method-collections_used_by}{\code{Arvados$collections_used_by()}}\r
+\item \href{#method-collections_trash}{\code{Arvados$collections_trash()}}\r
+\item \href{#method-collections_untrash}{\code{Arvados$collections_untrash()}}\r
+\item \href{#method-collections_list}{\code{Arvados$collections_list()}}\r
+\item \href{#method-containers_get}{\code{Arvados$containers_get()}}\r
+\item \href{#method-containers_create}{\code{Arvados$containers_create()}}\r
+\item \href{#method-containers_update}{\code{Arvados$containers_update()}}\r
+\item \href{#method-containers_delete}{\code{Arvados$containers_delete()}}\r
+\item \href{#method-containers_auth}{\code{Arvados$containers_auth()}}\r
+\item \href{#method-containers_lock}{\code{Arvados$containers_lock()}}\r
+\item \href{#method-containers_unlock}{\code{Arvados$containers_unlock()}}\r
+\item \href{#method-containers_secret_mounts}{\code{Arvados$containers_secret_mounts()}}\r
+\item \href{#method-containers_current}{\code{Arvados$containers_current()}}\r
+\item \href{#method-containers_list}{\code{Arvados$containers_list()}}\r
+\item \href{#method-container_requests_get}{\code{Arvados$container_requests_get()}}\r
+\item \href{#method-container_requests_create}{\code{Arvados$container_requests_create()}}\r
+\item \href{#method-container_requests_update}{\code{Arvados$container_requests_update()}}\r
+\item \href{#method-container_requests_delete}{\code{Arvados$container_requests_delete()}}\r
+\item \href{#method-container_requests_list}{\code{Arvados$container_requests_list()}}\r
+\item \href{#method-groups_get}{\code{Arvados$groups_get()}}\r
+\item \href{#method-groups_create}{\code{Arvados$groups_create()}}\r
+\item \href{#method-groups_update}{\code{Arvados$groups_update()}}\r
+\item \href{#method-groups_delete}{\code{Arvados$groups_delete()}}\r
+\item \href{#method-groups_contents}{\code{Arvados$groups_contents()}}\r
+\item \href{#method-groups_shared}{\code{Arvados$groups_shared()}}\r
+\item \href{#method-groups_trash}{\code{Arvados$groups_trash()}}\r
+\item \href{#method-groups_untrash}{\code{Arvados$groups_untrash()}}\r
+\item \href{#method-groups_list}{\code{Arvados$groups_list()}}\r
+\item \href{#method-keep_services_get}{\code{Arvados$keep_services_get()}}\r
+\item \href{#method-keep_services_create}{\code{Arvados$keep_services_create()}}\r
+\item \href{#method-keep_services_update}{\code{Arvados$keep_services_update()}}\r
+\item \href{#method-keep_services_delete}{\code{Arvados$keep_services_delete()}}\r
+\item \href{#method-keep_services_accessible}{\code{Arvados$keep_services_accessible()}}\r
+\item \href{#method-keep_services_list}{\code{Arvados$keep_services_list()}}\r
+\item \href{#method-project_permission_give}{\code{Arvados$project_permission_give()}}\r
+\item \href{#method-project_permission_refuse}{\code{Arvados$project_permission_refuse()}}\r
+\item \href{#method-project_permission_update}{\code{Arvados$project_permission_update()}}\r
+\item \href{#method-project_permission_check}{\code{Arvados$project_permission_check()}}\r
+\item \href{#method-links_get}{\code{Arvados$links_get()}}\r
+\item \href{#method-links_create}{\code{Arvados$links_create()}}\r
+\item \href{#method-links_update}{\code{Arvados$links_update()}}\r
+\item \href{#method-links_delete}{\code{Arvados$links_delete()}}\r
+\item \href{#method-links_list}{\code{Arvados$links_list()}}\r
+\item \href{#method-links_get_permissions}{\code{Arvados$links_get_permissions()}}\r
+\item \href{#method-logs_get}{\code{Arvados$logs_get()}}\r
+\item \href{#method-logs_create}{\code{Arvados$logs_create()}}\r
+\item \href{#method-logs_update}{\code{Arvados$logs_update()}}\r
+\item \href{#method-logs_delete}{\code{Arvados$logs_delete()}}\r
+\item \href{#method-logs_list}{\code{Arvados$logs_list()}}\r
+\item \href{#method-users_get}{\code{Arvados$users_get()}}\r
+\item \href{#method-users_create}{\code{Arvados$users_create()}}\r
+\item \href{#method-users_update}{\code{Arvados$users_update()}}\r
+\item \href{#method-users_delete}{\code{Arvados$users_delete()}}\r
+\item \href{#method-users_current}{\code{Arvados$users_current()}}\r
+\item \href{#method-users_system}{\code{Arvados$users_system()}}\r
+\item \href{#method-users_activate}{\code{Arvados$users_activate()}}\r
+\item \href{#method-users_setup}{\code{Arvados$users_setup()}}\r
+\item \href{#method-users_unsetup}{\code{Arvados$users_unsetup()}}\r
+\item \href{#method-users_merge}{\code{Arvados$users_merge()}}\r
+\item \href{#method-users_list}{\code{Arvados$users_list()}}\r
+\item \href{#method-repositories_get}{\code{Arvados$repositories_get()}}\r
+\item \href{#method-repositories_create}{\code{Arvados$repositories_create()}}\r
+\item \href{#method-repositories_update}{\code{Arvados$repositories_update()}}\r
+\item \href{#method-repositories_delete}{\code{Arvados$repositories_delete()}}\r
+\item \href{#method-repositories_get_all_permissions}{\code{Arvados$repositories_get_all_permissions()}}\r
+\item \href{#method-repositories_list}{\code{Arvados$repositories_list()}}\r
+\item \href{#method-virtual_machines_get}{\code{Arvados$virtual_machines_get()}}\r
+\item \href{#method-virtual_machines_create}{\code{Arvados$virtual_machines_create()}}\r
+\item \href{#method-virtual_machines_update}{\code{Arvados$virtual_machines_update()}}\r
+\item \href{#method-virtual_machines_delete}{\code{Arvados$virtual_machines_delete()}}\r
+\item \href{#method-virtual_machines_logins}{\code{Arvados$virtual_machines_logins()}}\r
+\item \href{#method-virtual_machines_get_all_logins}{\code{Arvados$virtual_machines_get_all_logins()}}\r
+\item \href{#method-virtual_machines_list}{\code{Arvados$virtual_machines_list()}}\r
+\item \href{#method-workflows_get}{\code{Arvados$workflows_get()}}\r
+\item \href{#method-workflows_create}{\code{Arvados$workflows_create()}}\r
+\item \href{#method-workflows_update}{\code{Arvados$workflows_update()}}\r
+\item \href{#method-workflows_delete}{\code{Arvados$workflows_delete()}}\r
+\item \href{#method-workflows_list}{\code{Arvados$workflows_list()}}\r
+\item \href{#method-user_agreements_get}{\code{Arvados$user_agreements_get()}}\r
+\item \href{#method-user_agreements_create}{\code{Arvados$user_agreements_create()}}\r
+\item \href{#method-user_agreements_update}{\code{Arvados$user_agreements_update()}}\r
+\item \href{#method-user_agreements_delete}{\code{Arvados$user_agreements_delete()}}\r
+\item \href{#method-user_agreements_signatures}{\code{Arvados$user_agreements_signatures()}}\r
+\item \href{#method-user_agreements_sign}{\code{Arvados$user_agreements_sign()}}\r
+\item \href{#method-user_agreements_list}{\code{Arvados$user_agreements_list()}}\r
+\item \href{#method-user_agreements_new}{\code{Arvados$user_agreements_new()}}\r
+\item \href{#method-configs_get}{\code{Arvados$configs_get()}}\r
+\item \href{#method-getHostName}{\code{Arvados$getHostName()}}\r
+\item \href{#method-getToken}{\code{Arvados$getToken()}}\r
+\item \href{#method-setRESTService}{\code{Arvados$setRESTService()}}\r
+\item \href{#method-getRESTService}{\code{Arvados$getRESTService()}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-new"></a>}}\r
+\if{latex}{\out{\hypertarget{method-new}{}}}\r
+\subsection{Method \code{new()}}{\r
+Initialize new enviroment.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{authToken}}{ARVADOS_API_TOKEN from 'Get API Token' on Arvados.}\r
+\r
+\item{\code{hostName}}{ARVADOS_API_HOST from 'Get API Token' on Arvados.}\r
+\r
+\item{\code{numRetries}}{Specify number of times to retry failed service requests.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Returns}{\r
+A new `Arvados` object.\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv <- Arvados$new(authToken = "ARVADOS_API_TOKEN", hostName = "ARVADOS_API_HOST", numRetries = 3)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_exist"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_exist}{}}}\r
+\subsection{Method \code{project_exist()}}{\r
+project_exist enables checking if the project with such a UUID exist.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_exist(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$project_exist(uuid = projectUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_get}{}}}\r
+\subsection{Method \code{project_get()}}{\r
+project_get returns the demanded project.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{project <- arv$project_get(uuid = projectUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_create}{}}}\r
+\subsection{Method \code{project_create()}}{\r
+project_create creates a new project of a given name and description.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_create(\r
+ name,\r
+ description,\r
+ ownerUUID,\r
+ properties = NULL,\r
+ ensureUniqueName = "false"\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{name}}{Name of the project.}\r
+\r
+\item{\code{description}}{Description of the project.}\r
+\r
+\item{\code{ownerUUID}}{The UUID of the maternal project to created one.}\r
+\r
+\item{\code{properties}}{List of the properties of the project.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+new_project <- arv$project_create(name = "project name", description = "project description", owner_uuid = "project UUID", properties = NULL, ensureUniqueName = "false")\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_properties_set"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_properties_set}{}}}\r
+\subsection{Method \code{project_properties_set()}}{\r
+project_properties_set is a method defined in Arvados class that enables setting properties. Allows to set or overwrite the properties. In case there are set already it overwrites them.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_properties_set(listProperties, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{listProperties}}{List of new properties.}\r
+\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+arv$project_properties_set(Properties, uuid)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_properties_append"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_properties_append}{}}}\r
+\subsection{Method \code{project_properties_append()}}{\r
+project_properties_append is a method defined in Arvados class that enables appending properties. Allows to add new properties.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_properties_append(properties, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+\r
+\item{\code{listOfNewProperties}}{List of new properties.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{newProperties <- list() # should contain a list of new properties to be added\r
+arv$project_properties_append(properties = newProperties, uuid)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_properties_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_properties_get}{}}}\r
+\subsection{Method \code{project_properties_get()}}{\r
+project_properties_get is a method defined in Arvados class that returns properties.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_properties_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$project_properties_get(projectUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_properties_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_properties_delete}{}}}\r
+\subsection{Method \code{project_properties_delete()}}{\r
+project_properties_delete is a method defined in Arvados class that deletes list of properties.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_properties_delete(oneProp, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{oneProp}}{Property to be deleted.}\r
+\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+arv$project_properties_delete(Properties, projectUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_update}{}}}\r
+\subsection{Method \code{project_update()}}{\r
+project_update enables updating project. New name, description and properties may be given.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_update(..., uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{...}}{Feature to be updated (name, description, properties).}\r
+\r
+\item{\code{uuid}}{The UUID of a project in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{newProperties <- list() # should contain a list of new properties to be added\r
+arv$project_update(name = "new project name", properties = newProperties, uuid = projectUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_list}{}}}\r
+\subsection{Method \code{project_list()}}{\r
+project_list enables listing project by its name, uuid, properties, permissions.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ includeTrash = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{includeTrash}}{Include items whose is_trashed attribute is true.}\r
+\r
+\item{\code{uuid}}{The UUID of a project in question.}\r
+\r
+\item{\code{recursive}}{Include contents from child groups recursively.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{listOfprojects <- arv$project_list(list(list("owner_uuid", "=", projectUUID))) # Sample query which show projects within the project of a given UUID\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_delete}{}}}\r
+\subsection{Method \code{project_delete()}}{\r
+project_delete trashes project of a given uuid. It can be restored from trash or deleted permanently.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_clients_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_clients_get}{}}}\r
+\subsection{Method \code{api_clients_get()}}{\r
+api_clients_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_clients_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the apiClient in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_clients_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_clients_create}{}}}\r
+\subsection{Method \code{api_clients_create()}}{\r
+api_clients_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_clients_create(\r
+ apiClient,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{apiClient}}{apiClient object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_clients_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_clients_update}{}}}\r
+\subsection{Method \code{api_clients_update()}}{\r
+api_clients_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_clients_update(apiClient, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{apiClient}}{apiClient object.}\r
+\r
+\item{\code{uuid}}{The UUID of the apiClient in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_clients_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_clients_delete}{}}}\r
+\subsection{Method \code{api_clients_delete()}}{\r
+api_clients_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_clients_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the apiClient in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_clients_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_clients_list}{}}}\r
+\subsection{Method \code{api_clients_list()}}{\r
+api_clients_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_clients_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_get}{}}}\r
+\subsection{Method \code{api_client_authorizations_get()}}{\r
+api_client_authorizations_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the apiClientAuthorization in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_create}{}}}\r
+\subsection{Method \code{api_client_authorizations_create()}}{\r
+api_client_authorizations_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_create(\r
+ apiClientAuthorization,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{apiClientAuthorization}}{apiClientAuthorization object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error on (ownerUUID, name) collision_}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_update}{}}}\r
+\subsection{Method \code{api_client_authorizations_update()}}{\r
+api_client_authorizations_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_update(apiClientAuthorization, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{apiClientAuthorization}}{apiClientAuthorization object.}\r
+\r
+\item{\code{uuid}}{The UUID of the apiClientAuthorization in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_delete}{}}}\r
+\subsection{Method \code{api_client_authorizations_delete()}}{\r
+api_client_authorizations_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the apiClientAuthorization in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_create_system_auth"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_create_system_auth}{}}}\r
+\subsection{Method \code{api_client_authorizations_create_system_auth()}}{\r
+api_client_authorizations_create_system_auth is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_create_system_auth(\r
+ apiClientID = NULL,\r
+ scopes = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_current"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_current}{}}}\r
+\subsection{Method \code{api_client_authorizations_current()}}{\r
+api_client_authorizations_current is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_current()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-api_client_authorizations_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-api_client_authorizations_list}{}}}\r
+\subsection{Method \code{api_client_authorizations_list()}}{\r
+api_client_authorizations_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$api_client_authorizations_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-authorized_keys_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-authorized_keys_get}{}}}\r
+\subsection{Method \code{authorized_keys_get()}}{\r
+authorized_keys_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$authorized_keys_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the authorizedKey in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-authorized_keys_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-authorized_keys_create}{}}}\r
+\subsection{Method \code{authorized_keys_create()}}{\r
+authorized_keys_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$authorized_keys_create(\r
+ authorizedKey,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{authorizedKey}}{authorizedKey object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-authorized_keys_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-authorized_keys_update}{}}}\r
+\subsection{Method \code{authorized_keys_update()}}{\r
+authorized_keys_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$authorized_keys_update(authorizedKey, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{authorizedKey}}{authorizedKey object.}\r
+\r
+\item{\code{uuid}}{The UUID of the authorizedKey in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-authorized_keys_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-authorized_keys_delete}{}}}\r
+\subsection{Method \code{authorized_keys_delete()}}{\r
+authorized_keys_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$authorized_keys_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the authorizedKey in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-authorized_keys_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-authorized_keys_list}{}}}\r
+\subsection{Method \code{authorized_keys_list()}}{\r
+authorized_keys_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$authorized_keys_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_get}{}}}\r
+\subsection{Method \code{collections_get()}}{\r
+collections_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Collection in question.\r
+collection <- arv$collections_get(uuid = collectionUUID)}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_create}{}}}\r
+\subsection{Method \code{collections_create()}}{\r
+collections_create is a method defined in Arvados class that enables collections creation.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_create(\r
+ name,\r
+ description,\r
+ ownerUUID = NULL,\r
+ properties = NULL,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{name}}{Name of the collection.}\r
+\r
+\item{\code{description}}{Description of the collection.}\r
+\r
+\item{\code{ownerUUID}}{UUID of the maternal project to created one.}\r
+\r
+\item{\code{properties}}{Properties of the collection.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{Properties <- list() # should contain a list of new properties to be added\r
+arv$collections_create(name = "collectionTitle", description = "collectionDescription", ownerUUID = "collectionOwner", properties = Properties)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_update}{}}}\r
+\subsection{Method \code{collections_update()}}{\r
+collections_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_update(\r
+ name,\r
+ description,\r
+ ownerUUID = NULL,\r
+ properties = NULL,\r
+ uuid\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{name}}{New name of the collection.}\r
+\r
+\item{\code{description}}{New description of the collection.}\r
+\r
+\item{\code{ownerUUID}}{UUID of the maternal project to created one.}\r
+\r
+\item{\code{properties}}{New list of properties of the collection.}\r
+\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{collection <- arv$collections_create(name = "newCollectionTitle", description = "newCollectionDescription", ownerUUID = "collectionOwner", properties = NULL)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_delete}{}}}\r
+\subsection{Method \code{collections_delete()}}{\r
+collections_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$collection_delete(collectionUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_provenance"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_provenance}{}}}\r
+\subsection{Method \code{collections_provenance()}}{\r
+collections_provenance is a method defined in Arvados class, it returns the collection by uuid.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_provenance(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{collection <- arv$collections_provenance(collectionUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_used_by"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_used_by}{}}}\r
+\subsection{Method \code{collections_used_by()}}{\r
+collections_used_by is a method defined in Arvados class, it returns collection by portable_data_hash.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_used_by(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_trash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_trash}{}}}\r
+\subsection{Method \code{collections_trash()}}{\r
+collections_trash is a method defined in Arvados class, it moves collection to trash.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_trash(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$collections_trash(collectionUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_untrash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_untrash}{}}}\r
+\subsection{Method \code{collections_untrash()}}{\r
+collections_untrash is a method defined in Arvados class, it moves collection from trash to project.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_untrash(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Collection in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$collections_untrash(collectionUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-collections_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-collections_list}{}}}\r
+\subsection{Method \code{collections_list()}}{\r
+collections_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$collections_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL,\r
+ includeTrash = NULL,\r
+ includeOldVersions = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+\r
+\item{\code{includeTrash}}{Include collections whose is_trashed attribute is true.}\r
+\r
+\item{\code{includeOldVersions}}{Include past collection versions.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{collectionList <- arv$collections.list(list(list("name", "=", "Example")))\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_get}{}}}\r
+\subsection{Method \code{containers_get()}}{\r
+containers_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_create}{}}}\r
+\subsection{Method \code{containers_create()}}{\r
+containers_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_create(\r
+ container,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{container}}{Container object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_update}{}}}\r
+\subsection{Method \code{containers_update()}}{\r
+containers_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_update(container, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{container}}{Container object.}\r
+\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_delete}{}}}\r
+\subsection{Method \code{containers_delete()}}{\r
+containers_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_auth"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_auth}{}}}\r
+\subsection{Method \code{containers_auth()}}{\r
+containers_auth is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_auth(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_lock"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_lock}{}}}\r
+\subsection{Method \code{containers_lock()}}{\r
+containers_lock is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_lock(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_unlock"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_unlock}{}}}\r
+\subsection{Method \code{containers_unlock()}}{\r
+containers_unlock is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_unlock(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_secret_mounts"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_secret_mounts}{}}}\r
+\subsection{Method \code{containers_secret_mounts()}}{\r
+containers_secret_mounts is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_secret_mounts(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Container in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_current"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_current}{}}}\r
+\subsection{Method \code{containers_current()}}{\r
+containers_current is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_current()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-containers_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-containers_list}{}}}\r
+\subsection{Method \code{containers_list()}}{\r
+containers_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$containers_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-container_requests_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-container_requests_get}{}}}\r
+\subsection{Method \code{container_requests_get()}}{\r
+container_requests_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$container_requests_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the containerRequest in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-container_requests_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-container_requests_create}{}}}\r
+\subsection{Method \code{container_requests_create()}}{\r
+container_requests_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$container_requests_create(\r
+ containerRequest,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{containerRequest}}{containerRequest object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-container_requests_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-container_requests_update}{}}}\r
+\subsection{Method \code{container_requests_update()}}{\r
+container_requests_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$container_requests_update(containerRequest, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{containerRequest}}{containerRequest object.}\r
+\r
+\item{\code{uuid}}{The UUID of the containerRequest in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-container_requests_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-container_requests_delete}{}}}\r
+\subsection{Method \code{container_requests_delete()}}{\r
+container_requests_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$container_requests_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the containerRequest in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-container_requests_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-container_requests_list}{}}}\r
+\subsection{Method \code{container_requests_list()}}{\r
+container_requests_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$container_requests_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL,\r
+ includeTrash = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{bypass federation behavior, list items from local instance database only}\r
+\r
+\item{\code{includeTrash}}{Include container requests whose owner project is trashed.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_get}{}}}\r
+\subsection{Method \code{groups_get()}}{\r
+groups_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_create}{}}}\r
+\subsection{Method \code{groups_create()}}{\r
+groups_create is a method defined in Arvados class that supports project creation.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_create(\r
+ group,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL,\r
+ async = "false"\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{group}}{Group object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{async}}{Defer permissions update.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_update}{}}}\r
+\subsection{Method \code{groups_update()}}{\r
+groups_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_update(group, uuid, async = "false")}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{group}}{Group object.}\r
+\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+\r
+\item{\code{async}}{Defer permissions update.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_delete}{}}}\r
+\subsection{Method \code{groups_delete()}}{\r
+groups_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_contents"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_contents}{}}}\r
+\subsection{Method \code{groups_contents()}}{\r
+groups_contents is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_contents(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL,\r
+ includeTrash = NULL,\r
+ uuid = NULL,\r
+ recursive = NULL,\r
+ include = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+\r
+\item{\code{includeTrash}}{Include items whose is_trashed attribute is true.}\r
+\r
+\item{\code{recursive}}{Include contents from child groups recursively.}\r
+\r
+\item{\code{include}}{Include objects referred to by listed field in "included" (only ownerUUID).}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_shared"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_shared}{}}}\r
+\subsection{Method \code{groups_shared()}}{\r
+groups_shared is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_shared(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL,\r
+ includeTrash = NULL,\r
+ include = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+\r
+\item{\code{includeTrash}}{Include items whose is_trashed attribute is true.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_trash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_trash}{}}}\r
+\subsection{Method \code{groups_trash()}}{\r
+groups_trash is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_trash(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_untrash"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_untrash}{}}}\r
+\subsection{Method \code{groups_untrash()}}{\r
+groups_untrash is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_untrash(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Group in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-groups_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-groups_list}{}}}\r
+\subsection{Method \code{groups_list()}}{\r
+groups_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$groups_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL,\r
+ includeTrash = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+\r
+\item{\code{includeTrash}}{Include items whose is_trashed attribute is true.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-keep_services_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-keep_services_get}{}}}\r
+\subsection{Method \code{keep_services_get()}}{\r
+keep_services_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$keep_services_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the keepService in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-keep_services_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-keep_services_create}{}}}\r
+\subsection{Method \code{keep_services_create()}}{\r
+keep_services_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$keep_services_create(\r
+ keepService,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{keepService}}{keepService object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-keep_services_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-keep_services_update}{}}}\r
+\subsection{Method \code{keep_services_update()}}{\r
+keep_services_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$keep_services_update(keepService, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{keepService}}{keepService object.}\r
+\r
+\item{\code{uuid}}{The UUID of the keepService in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-keep_services_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-keep_services_delete}{}}}\r
+\subsection{Method \code{keep_services_delete()}}{\r
+keep_services_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$keep_services_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the keepService in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-keep_services_accessible"></a>}}\r
+\if{latex}{\out{\hypertarget{method-keep_services_accessible}{}}}\r
+\subsection{Method \code{keep_services_accessible()}}{\r
+keep_services_accessible is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$keep_services_accessible()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-keep_services_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-keep_services_list}{}}}\r
+\subsection{Method \code{keep_services_list()}}{\r
+keep_services_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$keep_services_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_permission_give"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_permission_give}{}}}\r
+\subsection{Method \code{project_permission_give()}}{\r
+project_permission_give is a method defined in Arvados class that enables sharing files with another users.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_permission_give(type, uuid, user)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{type}}{Possible options are can_read or can_write or can_manage.}\r
+\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+\r
+\item{\code{user}}{The UUID of the person that gets the permission.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$project_permission_give(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_permission_refuse"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_permission_refuse}{}}}\r
+\subsection{Method \code{project_permission_refuse()}}{\r
+project_permission_refuse is a method defined in Arvados class that unables sharing files with another users.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_permission_refuse(type, uuid, user)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{type}}{Possible options are can_read or can_write or can_manage.}\r
+\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+\r
+\item{\code{user}}{The UUID of a person that permissions are taken from.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$project_permission_refuse(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_permission_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_permission_update}{}}}\r
+\subsection{Method \code{project_permission_update()}}{\r
+project_permission_update is a method defined in Arvados class that enables updating permissions.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_permission_update(typeOld, typeNew, uuid, user)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{typeOld}}{Old option.}\r
+\r
+\item{\code{typeNew}}{New option like can_read or can_write or can_manage.}\r
+\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+\r
+\item{\code{user}}{The UUID of the person that the permission is being updated.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$project_permission_update(typeOld = "can_read", typeNew = "can_write", uuid = objectUUID, user = userUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-project_permission_check"></a>}}\r
+\if{latex}{\out{\hypertarget{method-project_permission_check}{}}}\r
+\subsection{Method \code{project_permission_check()}}{\r
+project_permission_check is a method defined in Arvados class that enables checking file permissions.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$project_permission_check(uuid, user, type = NULL)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of a project or a file.}\r
+\r
+\item{\code{user}}{The UUID of the person that the permission is being updated.}\r
+\r
+\item{\code{type}}{Possible options are can_read or can_write or can_manage.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+\subsection{Examples}{\r
+\if{html}{\out{<div class="r example copy">}}\r
+\preformatted{arv$project_permission_check(type = "can_read", uuid = objectUUID, user = userUUID)\r
+}\r
+\if{html}{\out{</div>}}\r
+\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-links_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-links_get}{}}}\r
+\subsection{Method \code{links_get()}}{\r
+links_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$links_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Link in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-links_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-links_create}{}}}\r
+\subsection{Method \code{links_create()}}{\r
+links_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$links_create(link, ensureUniqueName = "false", clusterID = NULL)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{link}}{Link object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-links_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-links_update}{}}}\r
+\subsection{Method \code{links_update()}}{\r
+links_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$links_update(link, uuid, async = "false")}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{link}}{Link object.}\r
+\r
+\item{\code{uuid}}{The UUID of the Link in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-links_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-links_delete}{}}}\r
+\subsection{Method \code{links_delete()}}{\r
+links_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$links_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Link in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-links_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-links_list}{}}}\r
+\subsection{Method \code{links_list()}}{\r
+links_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$links_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-links_get_permissions"></a>}}\r
+\if{latex}{\out{\hypertarget{method-links_get_permissions}{}}}\r
+\subsection{Method \code{links_get_permissions()}}{\r
+links_get_permissions is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$links_get_permissions(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Log in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-logs_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-logs_get}{}}}\r
+\subsection{Method \code{logs_get()}}{\r
+logs_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$logs_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Log in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-logs_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-logs_create}{}}}\r
+\subsection{Method \code{logs_create()}}{\r
+logs_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$logs_create(log, ensureUniqueName = "false", clusterID = NULL)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{log}}{Log object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-logs_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-logs_update}{}}}\r
+\subsection{Method \code{logs_update()}}{\r
+logs_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$logs_update(log, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{log}}{Log object.}\r
+\r
+\item{\code{uuid}}{The UUID of the Log in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-logs_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-logs_delete}{}}}\r
+\subsection{Method \code{logs_delete()}}{\r
+logs_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$logs_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Log in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-logs_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-logs_list}{}}}\r
+\subsection{Method \code{logs_list()}}{\r
+logs_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$logs_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_get}{}}}\r
+\subsection{Method \code{users_get()}}{\r
+users_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the User in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_create}{}}}\r
+\subsection{Method \code{users_create()}}{\r
+users_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_create(user, ensureUniqueName = "false", clusterID = NULL)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{user}}{User object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_update}{}}}\r
+\subsection{Method \code{users_update()}}{\r
+users_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_update(user, uuid, bypassFederation = NULL)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{user}}{User object.}\r
+\r
+\item{\code{uuid}}{The UUID of the User in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_delete}{}}}\r
+\subsection{Method \code{users_delete()}}{\r
+users_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the User in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_current"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_current}{}}}\r
+\subsection{Method \code{users_current()}}{\r
+users_current is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_current()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_system"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_system}{}}}\r
+\subsection{Method \code{users_system()}}{\r
+users_system is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_system()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_activate"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_activate}{}}}\r
+\subsection{Method \code{users_activate()}}{\r
+users_activate is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_activate(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the User in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_setup"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_setup}{}}}\r
+\subsection{Method \code{users_setup()}}{\r
+users_setup is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_setup(\r
+ uuid = NULL,\r
+ user = NULL,\r
+ repo_name = NULL,\r
+ vm_uuid = NULL,\r
+ send_notification_email = "false"\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_unsetup"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_unsetup}{}}}\r
+\subsection{Method \code{users_unsetup()}}{\r
+users_unsetup is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_unsetup(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the User in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_merge"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_merge}{}}}\r
+\subsection{Method \code{users_merge()}}{\r
+users_merge is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_merge(\r
+ newOwnerUUID,\r
+ newUserToken = NULL,\r
+ redirectToNewUser = NULL,\r
+ oldUserUUID = NULL,\r
+ newUserUUID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-users_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-users_list}{}}}\r
+\subsection{Method \code{users_list()}}{\r
+users_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$users_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-repositories_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-repositories_get}{}}}\r
+\subsection{Method \code{repositories_get()}}{\r
+repositories_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$repositories_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Repository in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-repositories_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-repositories_create}{}}}\r
+\subsection{Method \code{repositories_create()}}{\r
+repositories_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$repositories_create(\r
+ repository,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{repository}}{Repository object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-repositories_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-repositories_update}{}}}\r
+\subsection{Method \code{repositories_update()}}{\r
+repositories_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$repositories_update(repository, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{repository}}{Repository object.}\r
+\r
+\item{\code{uuid}}{The UUID of the Repository in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-repositories_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-repositories_delete}{}}}\r
+\subsection{Method \code{repositories_delete()}}{\r
+repositories_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$repositories_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Repository in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-repositories_get_all_permissions"></a>}}\r
+\if{latex}{\out{\hypertarget{method-repositories_get_all_permissions}{}}}\r
+\subsection{Method \code{repositories_get_all_permissions()}}{\r
+repositories_get_all_permissions is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$repositories_get_all_permissions()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-repositories_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-repositories_list}{}}}\r
+\subsection{Method \code{repositories_list()}}{\r
+repositories_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$repositories_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_get}{}}}\r
+\subsection{Method \code{virtual_machines_get()}}{\r
+virtual_machines_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the virtualMachine in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_create}{}}}\r
+\subsection{Method \code{virtual_machines_create()}}{\r
+virtual_machines_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_create(\r
+ virtualMachine,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{virtualMachine}}{virtualMachine object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_update}{}}}\r
+\subsection{Method \code{virtual_machines_update()}}{\r
+virtual_machines_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_update(virtualMachine, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{virtualMachine}}{virtualMachine object.}\r
+\r
+\item{\code{uuid}}{The UUID of the virtualMachine in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_delete}{}}}\r
+\subsection{Method \code{virtual_machines_delete()}}{\r
+virtual_machines_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the virtualMachine in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_logins"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_logins}{}}}\r
+\subsection{Method \code{virtual_machines_logins()}}{\r
+virtual_machines_logins is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_logins(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the virtualMachine in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_get_all_logins"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_get_all_logins}{}}}\r
+\subsection{Method \code{virtual_machines_get_all_logins()}}{\r
+virtual_machines_get_all_logins is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_get_all_logins()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-virtual_machines_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-virtual_machines_list}{}}}\r
+\subsection{Method \code{virtual_machines_list()}}{\r
+virtual_machines_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$virtual_machines_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{bypass federation behavior, list items from local instance database only}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-workflows_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-workflows_get}{}}}\r
+\subsection{Method \code{workflows_get()}}{\r
+workflows_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$workflows_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Workflow in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-workflows_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-workflows_create}{}}}\r
+\subsection{Method \code{workflows_create()}}{\r
+workflows_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$workflows_create(\r
+ workflow,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{workflow}}{Workflow object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-workflows_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-workflows_update}{}}}\r
+\subsection{Method \code{workflows_update()}}{\r
+workflows_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$workflows_update(workflow, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{workflow}}{Workflow object.}\r
+\r
+\item{\code{uuid}}{The UUID of the Workflow in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-workflows_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-workflows_delete}{}}}\r
+\subsection{Method \code{workflows_delete()}}{\r
+workflows_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$workflows_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the Workflow in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-workflows_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-workflows_list}{}}}\r
+\subsection{Method \code{workflows_list()}}{\r
+workflows_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$workflows_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_get}{}}}\r
+\subsection{Method \code{user_agreements_get()}}{\r
+user_agreements_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_get(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the userAgreement in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_create"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_create}{}}}\r
+\subsection{Method \code{user_agreements_create()}}{\r
+user_agreements_create is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_create(\r
+ userAgreement,\r
+ ensureUniqueName = "false",\r
+ clusterID = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{userAgreement}}{userAgreement object.}\r
+\r
+\item{\code{ensureUniqueName}}{Adjust name to ensure uniqueness instead of returning an error.}\r
+\r
+\item{\code{clusterID}}{Create object on a remote federated cluster instead of the current one.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_update"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_update}{}}}\r
+\subsection{Method \code{user_agreements_update()}}{\r
+user_agreements_update is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_update(userAgreement, uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{userAgreement}}{userAgreement object.}\r
+\r
+\item{\code{uuid}}{The UUID of the userAgreement in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_delete"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_delete}{}}}\r
+\subsection{Method \code{user_agreements_delete()}}{\r
+user_agreements_delete is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_delete(uuid)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{uuid}}{The UUID of the userAgreement in question.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_signatures"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_signatures}{}}}\r
+\subsection{Method \code{user_agreements_signatures()}}{\r
+user_agreements_signatures is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_signatures()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_sign"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_sign}{}}}\r
+\subsection{Method \code{user_agreements_sign()}}{\r
+user_agreements_sign is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_sign()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_list"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_list}{}}}\r
+\subsection{Method \code{user_agreements_list()}}{\r
+user_agreements_list is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_list(\r
+ filters = NULL,\r
+ where = NULL,\r
+ order = NULL,\r
+ select = NULL,\r
+ distinct = NULL,\r
+ limit = "100",\r
+ offset = "0",\r
+ count = "exact",\r
+ clusterID = NULL,\r
+ bypassFederation = NULL\r
+)}\if{html}{\out{</div>}}\r
+}\r
+\r
+\subsection{Arguments}{\r
+\if{html}{\out{<div class="arguments">}}\r
+\describe{\r
+\item{\code{clusterID}}{List objects on a remote federated cluster instead of the current one.}\r
+\r
+\item{\code{bypassFederation}}{Bypass federation behavior, list items from local instance database only.}\r
+}\r
+\if{html}{\out{</div>}}\r
+}\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-user_agreements_new"></a>}}\r
+\if{latex}{\out{\hypertarget{method-user_agreements_new}{}}}\r
+\subsection{Method \code{user_agreements_new()}}{\r
+user_agreements_new is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$user_agreements_new()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-configs_get"></a>}}\r
+\if{latex}{\out{\hypertarget{method-configs_get}{}}}\r
+\subsection{Method \code{configs_get()}}{\r
+configs_get is a method defined in Arvados class.\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$configs_get()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-getHostName"></a>}}\r
+\if{latex}{\out{\hypertarget{method-getHostName}{}}}\r
+\subsection{Method \code{getHostName()}}{\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$getHostName()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-getToken"></a>}}\r
+\if{latex}{\out{\hypertarget{method-getToken}{}}}\r
+\subsection{Method \code{getToken()}}{\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$getToken()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-setRESTService"></a>}}\r
+\if{latex}{\out{\hypertarget{method-setRESTService}{}}}\r
+\subsection{Method \code{setRESTService()}}{\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$setRESTService(newREST)}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+\if{html}{\out{<hr>}}\r
+\if{html}{\out{<a id="method-getRESTService"></a>}}\r
+\if{latex}{\out{\hypertarget{method-getRESTService}{}}}\r
+\subsection{Method \code{getRESTService()}}{\r
+\subsection{Usage}{\r
+\if{html}{\out{<div class="r">}}\preformatted{Arvados$getRESTService()}\if{html}{\out{</div>}}\r
+}\r
+\r
+}\r
+}\r
projects / arvados.git / blobdiff