14198: Refactor and add support for --submit-runner-cluster

[arvados.git] / sdk / cwl / arvados_cwl / arvdocker.py

diff --git a/sdk/cwl/arvados_cwl/arvdocker.py b/sdk/cwl/arvados_cwl/arvdocker.py
index f83add9379c176d5cb9ad472c0778c68174058b5..6bca07c883e4c0d8fd4c85a1c21b56b9bb361e58 100644 (file)
--- a/sdk/cwl/arvados_cwl/arvdocker.py
+++ b/sdk/cwl/arvados_cwl/arvdocker.py
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
 import logging
 import sys
 import threading
@@ -29,10 +33,10 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid
         if dockerRequirement["dockerImageId"] in cached_lookups:
             return cached_lookups[dockerRequirement["dockerImageId"]]
 
-    with SourceLine(dockerRequirement, "dockerImageId", WorkflowException):
+    with SourceLine(dockerRequirement, "dockerImageId", WorkflowException, logger.isEnabledFor(logging.DEBUG)):
         sp = dockerRequirement["dockerImageId"].split(":")
         image_name = sp[0]
-        image_tag = sp[1] if len(sp) > 1 else None
+        image_tag = sp[1] if len(sp) > 1 else "latest"
 
         images = arvados.commands.keepdocker.list_images_in_arv(api_client, 3,
                                                                 image_name=image_name,
@@ -40,18 +44,21 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid
 
         if not images:
             # Fetch Docker image if necessary.
-            cwltool.docker.get_image(dockerRequirement, pull_image)
+            try:
+                cwltool.docker.DockerCommandLineJob.get_image(dockerRequirement, pull_image)
+            except OSError as e:
+                raise WorkflowException("While trying to get Docker image '%s', failed to execute 'docker': %s" % (dockerRequirement["dockerImageId"], e))
 
             # Upload image to Arvados
             args = []
             if project_uuid:
                 args.append("--project-uuid="+project_uuid)
             args.append(image_name)
-            if image_tag:
-                args.append(image_tag)
-            logger.info("Uploading Docker image %s", ":".join(args[1:]))
+            args.append(image_tag)
+            logger.info("Uploading Docker image %s:%s", image_name, image_tag)
             try:
-                arvados.commands.keepdocker.main(args, stdout=sys.stderr)
+                arvados.commands.put.api_client = api_client
+                arvados.commands.keepdocker.main(args, stdout=sys.stderr, install_sig_handlers=False, api=api_client)
             except SystemExit as e:
                 if e.code:
                     raise WorkflowException("keepdocker exited with code %s" % e.code)
@@ -68,7 +75,7 @@ def arv_docker_get_image(api_client, dockerRequirement, pull_image, project_uuid
         with cached_lookups_lock:
             cached_lookups[dockerRequirement["dockerImageId"]] = pdh
 
-        return pdh
+    return pdh
 
 def arv_docker_clear_cache():
     global cached_lookups