+// Copyright (C) The Arvados Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
package main
import (
+ "bufio"
"bytes"
+ "context"
"crypto/md5"
"encoding/json"
"errors"
"fmt"
- "git.curoverse.com/arvados.git/sdk/go/arvados"
- "git.curoverse.com/arvados.git/sdk/go/arvadosclient"
- "git.curoverse.com/arvados.git/sdk/go/keepclient"
- "git.curoverse.com/arvados.git/sdk/go/manifest"
- "github.com/curoverse/dockerclient"
- . "gopkg.in/check.v1"
"io"
"io/ioutil"
+ "net"
"os"
"os/exec"
"path/filepath"
+ "runtime/pprof"
"sort"
"strings"
"sync"
"syscall"
"testing"
"time"
+
+ "git.curoverse.com/arvados.git/sdk/go/arvados"
+ "git.curoverse.com/arvados.git/sdk/go/arvadosclient"
+ "git.curoverse.com/arvados.git/sdk/go/manifest"
+
+ dockertypes "github.com/docker/docker/api/types"
+ dockercontainer "github.com/docker/docker/api/types/container"
+ dockernetwork "github.com/docker/docker/api/types/network"
+ . "gopkg.in/check.v1"
)
// Gocheck boilerplate
Calls int
Content []arvadosclient.Dict
arvados.Container
- Logs map[string]*bytes.Buffer
- WasSetRunning bool
+ Logs map[string]*bytes.Buffer
sync.Mutex
+ WasSetRunning bool
}
type KeepTestClient struct {
var otherManifest = ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:md5sum.txt\n"
var otherPDH = "a3e8f74c6f101eae01fa08bfb4e49b3a+54"
+var normalizedManifestWithSubdirs = `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt
+./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+`
+
+var normalizedWithSubdirsPDH = "a0def87f80dd594d4675809e83bd4f15+367"
+
+var denormalizedManifestWithSubdirs = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt 0:10:subdir1/file1_in_subdir1.txt 10:17:subdir1/file2_in_subdir1.txt\n"
+var denormalizedWithSubdirsPDH = "b0def87f80dd594d4675809e83bd4f15+367"
+
var fakeAuthUUID = "zzzzz-gj3su-55pqoyepgi2glem"
var fakeAuthToken = "a3ltuwzqcu2u4sc0q7yhpc2w7s00fdcqecg5d6e0u3pfohmbjt"
logReader io.ReadCloser
logWriter io.WriteCloser
fn func(t *TestDockerClient)
- finish chan dockerclient.WaitResult
+ finish int
stop chan bool
cwd string
env []string
api *ArvTestClient
+ realTemp string
}
-func NewTestDockerClient() *TestDockerClient {
+func NewTestDockerClient(exitCode int) *TestDockerClient {
t := &TestDockerClient{}
t.logReader, t.logWriter = io.Pipe()
- t.finish = make(chan dockerclient.WaitResult)
+ t.finish = exitCode
t.stop = make(chan bool)
t.cwd = "/"
return t
}
-func (t *TestDockerClient) StopContainer(id string, timeout int) error {
- t.stop <- true
- return nil
+type MockConn struct {
+ net.Conn
}
-func (t *TestDockerClient) InspectImage(id string) (*dockerclient.ImageInfo, error) {
- if t.imageLoaded == id {
- return &dockerclient.ImageInfo{}, nil
- } else {
- return nil, errors.New("")
- }
+func (m *MockConn) Write(b []byte) (int, error) {
+ return len(b), nil
}
-func (t *TestDockerClient) LoadImage(reader io.Reader) error {
- _, err := io.Copy(ioutil.Discard, reader)
- if err != nil {
- return err
- } else {
- t.imageLoaded = hwImageId
- return nil
- }
+func NewMockConn() *MockConn {
+ c := &MockConn{}
+ return c
+}
+
+func (t *TestDockerClient) ContainerAttach(ctx context.Context, container string, options dockertypes.ContainerAttachOptions) (dockertypes.HijackedResponse, error) {
+ return dockertypes.HijackedResponse{Conn: NewMockConn(), Reader: bufio.NewReader(t.logReader)}, nil
}
-func (t *TestDockerClient) CreateContainer(config *dockerclient.ContainerConfig, name string, authConfig *dockerclient.AuthConfig) (string, error) {
+func (t *TestDockerClient) ContainerCreate(ctx context.Context, config *dockercontainer.Config, hostConfig *dockercontainer.HostConfig, networkingConfig *dockernetwork.NetworkingConfig, containerName string) (dockercontainer.ContainerCreateCreatedBody, error) {
if config.WorkingDir != "" {
t.cwd = config.WorkingDir
}
t.env = config.Env
- return "abcde", nil
+ return dockercontainer.ContainerCreateCreatedBody{ID: "abcde"}, nil
}
-func (t *TestDockerClient) StartContainer(id string, config *dockerclient.HostConfig) error {
- if id == "abcde" {
+func (t *TestDockerClient) ContainerStart(ctx context.Context, container string, options dockertypes.ContainerStartOptions) error {
+ if container == "abcde" {
go t.fn(t)
return nil
} else {
}
}
-func (t *TestDockerClient) AttachContainer(id string, options *dockerclient.AttachOptions) (io.ReadCloser, error) {
- return t.logReader, nil
+func (t *TestDockerClient) ContainerStop(ctx context.Context, container string, timeout *time.Duration) error {
+ t.stop <- true
+ return nil
+}
+
+func (t *TestDockerClient) ContainerWait(ctx context.Context, container string, condition dockercontainer.WaitCondition) (<-chan dockercontainer.ContainerWaitOKBody, <-chan error) {
+ body := make(chan dockercontainer.ContainerWaitOKBody)
+ err := make(chan error)
+ go func() {
+ body <- dockercontainer.ContainerWaitOKBody{StatusCode: int64(t.finish)}
+ close(body)
+ close(err)
+ }()
+ return body, err
+}
+
+func (t *TestDockerClient) ImageInspectWithRaw(ctx context.Context, image string) (dockertypes.ImageInspect, []byte, error) {
+ if t.imageLoaded == image {
+ return dockertypes.ImageInspect{}, nil, nil
+ } else {
+ return dockertypes.ImageInspect{}, nil, errors.New("")
+ }
}
-func (t *TestDockerClient) Wait(id string) <-chan dockerclient.WaitResult {
- return t.finish
+func (t *TestDockerClient) ImageLoad(ctx context.Context, input io.Reader, quiet bool) (dockertypes.ImageLoadResponse, error) {
+ _, err := io.Copy(ioutil.Discard, input)
+ if err != nil {
+ return dockertypes.ImageLoadResponse{}, err
+ } else {
+ t.imageLoaded = hwImageId
+ return dockertypes.ImageLoadResponse{Body: ioutil.NopCloser(input)}, nil
+ }
}
-func (*TestDockerClient) RemoveImage(name string, force bool) ([]*dockerclient.ImageDelete, error) {
+func (*TestDockerClient) ImageRemove(ctx context.Context, image string, options dockertypes.ImageRemoveOptions) ([]dockertypes.ImageDeleteResponseItem, error) {
return nil, nil
}
}
}
+func (client *ArvTestClient) CallRaw(method, resourceType, uuid, action string,
+ parameters arvadosclient.Dict) (reader io.ReadCloser, err error) {
+ j := []byte(`{
+ "command": ["sleep", "1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`)
+ return ioutil.NopCloser(bytes.NewReader(j)), nil
+}
+
func (client *ArvTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
if resourceType == "collections" {
if uuid == hwPDH {
output.(*arvados.Collection).ManifestText = hwManifest
} else if uuid == otherPDH {
output.(*arvados.Collection).ManifestText = otherManifest
+ } else if uuid == normalizedWithSubdirsPDH {
+ output.(*arvados.Collection).ManifestText = normalizedManifestWithSubdirs
+ } else if uuid == denormalizedWithSubdirsPDH {
+ output.(*arvados.Collection).ManifestText = denormalizedManifestWithSubdirs
}
}
if resourceType == "containers" {
return nil
}
-var discoveryMap = map[string]interface{}{"defaultTrashLifetime": float64(1209600)}
+var discoveryMap = map[string]interface{}{
+ "defaultTrashLifetime": float64(1209600),
+ "crunchLimitLogBytesPerJob": float64(67108864),
+ "crunchLogThrottleBytes": float64(65536),
+ "crunchLogThrottlePeriod": float64(60),
+ "crunchLogThrottleLines": float64(1024),
+ "crunchLogPartialLineThrottlePeriod": float64(5),
+ "crunchLogBytesPerEvent": float64(4096),
+ "crunchLogSecondsBetweenEvents": float64(1),
+}
func (client *ArvTestClient) Discovery(key string) (interface{}, error) {
return discoveryMap[key], nil
type FileWrapper struct {
io.ReadCloser
- len uint64
+ len int64
}
-func (fw FileWrapper) Len() uint64 {
+func (fw FileWrapper) Size() int64 {
return fw.len
}
return 0, errors.New("not implemented")
}
-func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) {
+func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
if filename == hwImageId+".tar" {
rdr := ioutil.NopCloser(&bytes.Buffer{})
client.Called = true
return FileWrapper{rdr, 1321984}, nil
+ } else if filename == "/file1_in_main.txt" {
+ rdr := ioutil.NopCloser(strings.NewReader("foo"))
+ client.Called = true
+ return FileWrapper{rdr, 3}, nil
}
return nil, nil
}
func (s *TestSuite) TestLoadImage(c *C) {
kc := &KeepTestClient{}
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(0)
cr := NewContainerRunner(&ArvTestClient{}, kc, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
- _, err := cr.Docker.RemoveImage(hwImageId, true)
+ _, err := cr.Docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
- _, err = cr.Docker.InspectImage(hwImageId)
+ _, _, err = cr.Docker.ImageInspectWithRaw(nil, hwImageId)
c.Check(err, NotNil)
cr.Container.ContainerImage = hwPDH
c.Check(err, IsNil)
defer func() {
- cr.Docker.RemoveImage(hwImageId, true)
+ cr.Docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
}()
c.Check(kc.Called, Equals, true)
c.Check(cr.ContainerConfig.Image, Equals, hwImageId)
- _, err = cr.Docker.InspectImage(hwImageId)
+ _, _, err = cr.Docker.ImageInspectWithRaw(nil, hwImageId)
c.Check(err, IsNil)
// (2) Test using image that's already loaded
return errors.New("ArvError")
}
+func (ArvErrorTestClient) CallRaw(method, resourceType, uuid, action string,
+ parameters arvadosclient.Dict) (reader io.ReadCloser, err error) {
+ return nil, errors.New("ArvError")
+}
+
func (ArvErrorTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
return errors.New("ArvError")
}
return "", 0, errors.New("KeepError")
}
-func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) {
+func (KeepErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
return nil, errors.New("KeepError")
}
return nil
}
-func (ErrorReader) Len() uint64 {
+func (ErrorReader) Size() int64 {
return 0
}
return 0, errors.New("ErrorReader")
}
-func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (keepclient.Reader, error) {
+func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
return ErrorReader{}, nil
}
func (s *TestSuite) TestLoadImageKeepError(c *C) {
// (2) Keep error
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(0)
cr := NewContainerRunner(&ArvTestClient{}, KeepErrorTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
cr.Container.ContainerImage = hwPDH
func (s *TestSuite) TestLoadImageKeepReadError(c *C) {
// (4) Collection doesn't contain image
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(0)
cr := NewContainerRunner(&ArvTestClient{}, KeepReadErrorTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
cr.Container.ContainerImage = hwPDH
}
func (s *TestSuite) TestRunContainer(c *C) {
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(0)
docker.fn = func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, "Hello world\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{}
}
cr := NewContainerRunner(&ArvTestClient{}, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
c.Check(err, IsNil)
c.Check(api.Calls, Equals, 2)
+ c.Check(api.Content[1]["ensure_unique_name"], Equals, true)
c.Check(api.Content[1]["collection"].(arvadosclient.Dict)["name"], Equals, "logs for zzzzz-zzzzz-zzzzzzzzzzzzzzz")
c.Check(api.Content[1]["collection"].(arvadosclient.Dict)["manifest_text"], Equals, ". 744b2e4553123b02fa7b452ec5c18993+123 0:123:crunch-run.txt\n")
c.Check(*cr.LogsPDH, Equals, "63da7bdacf08c40f604daad80c261e9a+60")
api := &ArvTestClient{}
kc := &KeepTestClient{}
cr := NewContainerRunner(api, kc, nil, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
- cr.Cancelled = true
+ cr.cCancelled = true
cr.finalState = "Cancelled"
err := cr.UpdateContainerFinal()
// Used by the TestFullRun*() test below to DRY up boilerplate setup to do full
// dress rehearsal of the Run() function, starting from a JSON container record.
-func FullRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner) {
+func FullRunHelper(c *C, record string, extraMounts []string, exitCode int, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner, realTemp string) {
rec := arvados.Container{}
err := json.Unmarshal([]byte(record), &rec)
c.Check(err, IsNil)
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(exitCode)
docker.fn = fn
- docker.RemoveImage(hwImageId, true)
+ docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
api = &ArvTestClient{Container: rec}
docker.api = api
am := &ArvMountCmdLine{}
cr.RunArvMount = am.ArvMountTest
+ realTemp, err = ioutil.TempDir("", "crunchrun_test1-")
+ c.Assert(err, IsNil)
+ defer os.RemoveAll(realTemp)
+
+ docker.realTemp = realTemp
+
+ tempcount := 0
+ cr.MkTempDir = func(_ string, prefix string) (string, error) {
+ tempcount++
+ d := fmt.Sprintf("%s/%s%d", realTemp, prefix, tempcount)
+ err := os.Mkdir(d, os.ModePerm)
+ if err != nil && strings.Contains(err.Error(), ": file exists") {
+ // Test case must have pre-populated the tempdir
+ err = nil
+ }
+ return d, err
+ }
+
+ if extraMounts != nil && len(extraMounts) > 0 {
+ err := cr.SetupArvMountPoint("keep")
+ c.Check(err, IsNil)
+
+ for _, m := range extraMounts {
+ os.MkdirAll(cr.ArvMountPoint+"/by_id/"+m, os.ModePerm)
+ }
+ }
+
err = cr.Run()
- c.Check(err, IsNil)
+ if api.CalledWith("container.state", "Complete") != nil {
+ c.Check(err, IsNil)
+ }
c.Check(api.WasSetRunning, Equals, true)
c.Check(api.Content[api.Calls-1]["container"].(arvadosclient.Dict)["log"], NotNil)
}
func (s *TestSuite) TestFullRunHello(c *C) {
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["echo", "hello world"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": ".",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {}
-}`, func(t *TestDockerClient) {
+}`, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, "hello world\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
}
func (s *TestSuite) TestCrunchstat(c *C) {
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["sleep", "1"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": ".",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {}
- }`, func(t *TestDockerClient) {
+ }`, nil, 0, func(t *TestDockerClient) {
time.Sleep(time.Second)
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
c.Check(api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files never appeared for abcde\n`)
}
+func (s *TestSuite) TestNodeInfoLog(c *C) {
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["sleep", "1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`, nil, 0,
+ func(t *TestDockerClient) {
+ time.Sleep(time.Second)
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+
+ c.Assert(api.Logs["node-info"], NotNil)
+ c.Check(api.Logs["node-info"].String(), Matches, `(?ms).*Host Information.*`)
+ c.Check(api.Logs["node-info"].String(), Matches, `(?ms).*CPU Information.*`)
+ c.Check(api.Logs["node-info"].String(), Matches, `(?ms).*Memory Information.*`)
+ c.Check(api.Logs["node-info"].String(), Matches, `(?ms).*Disk Space.*`)
+ c.Check(api.Logs["node-info"].String(), Matches, `(?ms).*Disk INodes.*`)
+}
+
+func (s *TestSuite) TestContainerRecordLog(c *C) {
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["sleep", "1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`, nil, 0,
+ func(t *TestDockerClient) {
+ time.Sleep(time.Second)
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+
+ c.Assert(api.Logs["container"], NotNil)
+ c.Check(api.Logs["container"].String(), Matches, `(?ms).*container_image.*`)
+}
+
func (s *TestSuite) TestFullRunStderr(c *C) {
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["/bin/sh", "-c", "echo hello ; echo world 1>&2 ; exit 1"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": ".",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {}
-}`, func(t *TestDockerClient) {
+}`, nil, 1, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, "hello\n"))
t.logWriter.Write(dockerLog(2, "world\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 1}
})
final := api.CalledWith("container.state", "Complete")
}
func (s *TestSuite) TestFullRunDefaultCwd(c *C) {
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["pwd"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": ".",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {}
-}`, func(t *TestDockerClient) {
+}`, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, t.cwd+"\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
}
func (s *TestSuite) TestFullRunSetCwd(c *C) {
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["pwd"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": "/bin",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {}
-}`, func(t *TestDockerClient) {
+}`, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, t.cwd+"\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "/bin\n"), Equals, true)
}
-func (s *TestSuite) TestCancel(c *C) {
+func (s *TestSuite) TestStopOnSignal(c *C) {
+ s.testStopContainer(c, func(cr *ContainerRunner) {
+ go func() {
+ for !cr.cStarted {
+ time.Sleep(time.Millisecond)
+ }
+ cr.SigChan <- syscall.SIGINT
+ }()
+ })
+}
+
+func (s *TestSuite) TestStopOnArvMountDeath(c *C) {
+ s.testStopContainer(c, func(cr *ContainerRunner) {
+ cr.ArvMountExit = make(chan error)
+ go func() {
+ cr.ArvMountExit <- exec.Command("true").Run()
+ close(cr.ArvMountExit)
+ }()
+ })
+}
+
+func (s *TestSuite) testStopContainer(c *C, setup func(cr *ContainerRunner)) {
record := `{
"command": ["/bin/sh", "-c", "echo foo && sleep 30 && echo bar"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
err := json.Unmarshal([]byte(record), &rec)
c.Check(err, IsNil)
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(0)
docker.fn = func(t *TestDockerClient) {
<-t.stop
t.logWriter.Write(dockerLog(1, "foo\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
}
- docker.RemoveImage(hwImageId, true)
+ docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
api := &ArvTestClient{Container: rec}
cr := NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
- am := &ArvMountCmdLine{}
- cr.RunArvMount = am.ArvMountTest
+ cr.RunArvMount = func([]string, string) (*exec.Cmd, error) { return nil, nil }
+ setup(cr)
+ done := make(chan error)
go func() {
- for cr.ContainerID == "" {
- time.Sleep(time.Millisecond)
- }
- cr.SigChan <- syscall.SIGINT
+ done <- cr.Run()
}()
-
- err = cr.Run()
-
- c.Check(err, IsNil)
- if err != nil {
- for k, v := range api.Logs {
- c.Log(k)
- c.Log(v.String())
- }
+ select {
+ case <-time.After(20 * time.Second):
+ pprof.Lookup("goroutine").WriteTo(os.Stderr, 1)
+ c.Fatal("timed out")
+ case err = <-done:
+ c.Check(err, IsNil)
+ }
+ for k, v := range api.Logs {
+ c.Log(k)
+ c.Log(v.String())
}
c.Check(api.CalledWith("container.log", nil), NotNil)
c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "foo\n"), Equals, true)
-
}
func (s *TestSuite) TestFullRunSetEnv(c *C) {
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["/bin/sh", "-c", "echo $FROBIZ"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": "/bin",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {}
-}`, func(t *TestDockerClient) {
+}`, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
{
i = 0
+ cr.ArvMountPoint = ""
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
cr.OutputPath = "/tmp"
{
i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts["/out"] = arvados.Mount{Kind: "tmp"}
+ cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
+ cr.OutputPath = "/out"
+
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/out", realTemp + "/3:/tmp"})
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ {
+ i = 0
+ cr.ArvMountPoint = ""
cr.Container.Mounts = make(map[string]arvados.Mount)
cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
cr.OutputPath = "/tmp"
{
i = 0
+ cr.ArvMountPoint = ""
cr.Container.Mounts = map[string]arvados.Mount{
"/keeptmp": {Kind: "collection", Writable: true},
}
{
i = 0
+ cr.ArvMountPoint = ""
cr.Container.Mounts = map[string]arvados.Mount{
"/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
"/keepout": {Kind: "collection", Writable: true},
{
i = 0
+ cr.ArvMountPoint = ""
cr.Container.RuntimeConstraints.KeepCacheRAM = 512
cr.Container.Mounts = map[string]arvados.Mount{
"/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
{in: map[string]int{"foo": 123}, out: `{"foo":123}`},
} {
i = 0
+ cr.ArvMountPoint = ""
cr.Container.Mounts = map[string]arvados.Mount{
"/mnt/test.json": {Kind: "json", Content: test.in},
}
cr.CleanupDirs()
checkEmpty()
}
+
+ // Read-only mount points are allowed underneath output_dir mount point
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tmp": {Kind: "tmp"},
+ "/tmp/foo": {Kind: "collection"},
+ }
+ cr.OutputPath = "/tmp"
+
+ os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
+
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2:/tmp", realTemp + "/keep1/tmp0:/tmp/foo:ro"})
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Writable mount points are not allowed underneath output_dir mount point
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tmp": {Kind: "tmp"},
+ "/tmp/foo": {Kind: "collection", Writable: true},
+ }
+ cr.OutputPath = "/tmp"
+
+ err := cr.SetupMounts()
+ c.Check(err, NotNil)
+ c.Check(err, ErrorMatches, `Writable mount points are not permitted underneath the output_path.*`)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Only mount points of kind 'collection' are allowed underneath output_dir mount point
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/tmp": {Kind: "tmp"},
+ "/tmp/foo": {Kind: "json"},
+ }
+ cr.OutputPath = "/tmp"
+
+ err := cr.SetupMounts()
+ c.Check(err, NotNil)
+ c.Check(err, ErrorMatches, `Only mount points of kind 'collection' are supported underneath the output_path.*`)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ // Only mount point of kind 'collection' is allowed for stdin
+ {
+ i = 0
+ cr.ArvMountPoint = ""
+ cr.Container.Mounts = make(map[string]arvados.Mount)
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "stdin": {Kind: "tmp"},
+ }
+
+ err := cr.SetupMounts()
+ c.Check(err, NotNil)
+ c.Check(err, ErrorMatches, `Unsupported mount kind 'tmp' for stdin.*`)
+ cr.CleanupDirs()
+ checkEmpty()
+ }
}
func (s *TestSuite) TestStdout(c *C) {
"runtime_constraints": {}
}`
- api, _ := FullRunHelper(c, helperRecord, func(t *TestDockerClient) {
+ api, _, _ := FullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
err = json.Unmarshal([]byte(record), &rec)
c.Check(err, IsNil)
- docker := NewTestDockerClient()
+ docker := NewTestDockerClient(0)
docker.fn = fn
- docker.RemoveImage(hwImageId, true)
+ docker.ImageRemove(nil, hwImageId, dockertypes.ImageRemoveOptions{})
api = &ArvTestClient{Container: rec}
cr = NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
func (s *TestSuite) TestFullRunWithAPI(c *C) {
os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
defer os.Unsetenv("ARVADOS_API_HOST")
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": "/bin",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {"API": true}
-}`, func(t *TestDockerClient) {
+}`, nil, 0, func(t *TestDockerClient) {
t.logWriter.Write(dockerLog(1, t.env[1][17:]+"\n"))
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
func (s *TestSuite) TestFullRunSetOutput(c *C) {
os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
defer os.Unsetenv("ARVADOS_API_HOST")
- api, _ := FullRunHelper(c, `{
+ api, _, _ := FullRunHelper(c, `{
"command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
"container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
"cwd": "/bin",
"output_path": "/tmp",
"priority": 1,
"runtime_constraints": {"API": true}
-}`, func(t *TestDockerClient) {
+}`, nil, 0, func(t *TestDockerClient) {
t.api.Container.Output = "d4ab34d3d4f8a72f5c4973051ae69fab+122"
t.logWriter.Close()
- t.finish <- dockerclient.WaitResult{ExitCode: 0}
})
c.Check(api.CalledWith("container.exit_code", 0), NotNil)
c.Check(api.CalledWith("container.state", "Complete"), NotNil)
c.Check(api.CalledWith("container.output", "d4ab34d3d4f8a72f5c4973051ae69fab+122"), NotNil)
}
+
+func (s *TestSuite) TestStdoutWithExcludeFromOutputMountPointUnderOutputDir(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/foo": {"kind": "collection",
+ "portable_data_hash": "a3e8f74c6f101eae01fa08bfb4e49b3a+54",
+ "exclude_from_output": true
+ },
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{"a3e8f74c6f101eae01fa08bfb4e49b3a+54"}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil)
+}
+
+func (s *TestSuite) TestStdoutWithMultipleMountPointsUnderOutputDir(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/file2_in_main.txt"},
+ "/tmp/foo/sub1": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1"},
+ "/tmp/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/file2_in_subdir1.txt"},
+ "/tmp/foo/baz/sub2file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/subdir2/file2_in_subdir2.txt"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt",
+ "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
+ "a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt",
+ }
+
+ api, runner, realtemp := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(runner.Binds, DeepEquals, []string{realtemp + "/2:/tmp",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt:/tmp/foo/bar:ro",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt:/tmp/foo/baz/sub2file2:ro",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1:/tmp/foo/sub1:ro",
+ realtemp + "/keep1/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt:/tmp/foo/sub1file2:ro",
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ c.Check(v["ensure_unique_name"], Equals, true)
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 9:18:bar 9:18:sub1file2
+./foo/baz 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 9:18:sub2file2
+./foo/sub1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./foo/sub1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestStdoutWithMountPointsUnderOutputDirDenormalizedManifest(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "b0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
+ }
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 10:17:bar
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestOutputSymlinkToInput(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "/keep/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path": "/subdir1/file2_in_subdir1.txt"},
+ "/keep/foo2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
+ }
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ os.Symlink("/keep/foo/sub1file2", t.realTemp+"/2/baz")
+ os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz2")
+ os.Symlink("/keep/foo2/subdir1", t.realTemp+"/2/baz3")
+ os.Mkdir(t.realTemp+"/2/baz4", 0700)
+ os.Symlink("/keep/foo2/subdir1/file2_in_subdir1.txt", t.realTemp+"/2/baz4/baz5")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals, `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz 9:18:baz2
+./baz3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
+./baz3/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
+./baz4 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:baz5
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestOutputError(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{}
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ os.Symlink("/etc/hosts", t.realTemp+"/2/baz")
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.state", "Cancelled"), NotNil)
+}
+
+func (s *TestSuite) TestStdinCollectionMountPoint(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "stdin": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367", "path": "/file1_in_main.txt"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ extraMounts := []string{
+ "b0def87f80dd594d4675809e83bd4f15+367/file1_in_main.txt",
+ }
+
+ api, _, _ := FullRunHelper(c, helperRecord, extraMounts, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestStdinJsonMountPoint(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {
+ "/tmp": {"kind": "tmp"},
+ "stdin": {"kind": "json", "content": "foo"},
+ "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
+ },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ api, _, _ := FullRunHelper(c, helperRecord, nil, 0, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ for _, v := range api.Content {
+ if v["collection"] != nil {
+ collection := v["collection"].(arvadosclient.Dict)
+ if strings.Index(collection["name"].(string), "output") == 0 {
+ manifest := collection["manifest_text"].(string)
+ c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
+`)
+ }
+ }
+ }
+}
+
+func (s *TestSuite) TestStderrMount(c *C) {
+ api, _, _ := FullRunHelper(c, `{
+ "command": ["/bin/sh", "-c", "echo hello;exit 1"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": ".",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"},
+ "stdout": {"kind": "file", "path": "/tmp/a/out.txt"},
+ "stderr": {"kind": "file", "path": "/tmp/b/err.txt"}},
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+}`, nil, 1, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, "hello\n"))
+ t.logWriter.Write(dockerLog(2, "oops\n"))
+ t.logWriter.Close()
+ })
+
+ final := api.CalledWith("container.state", "Complete")
+ c.Assert(final, NotNil)
+ c.Check(final["container"].(arvadosclient.Dict)["exit_code"], Equals, 1)
+ c.Check(final["container"].(arvadosclient.Dict)["log"], NotNil)
+
+ c.Check(api.CalledWith("collection.manifest_text", "./a b1946ac92492d2347c6235b4d2611184+6 0:6:out.txt\n./b 38af5c54926b620264ab1501150cf189+5 0:5:err.txt\n"), NotNil)
+}
projects / arvados.git / blobdiff