"os/exec"
"os/user"
"path/filepath"
+ "runtime"
"strconv"
"strings"
"syscall"
var Command cmd.Handler = &installCommand{}
-const goversion = "1.17.7"
+const goversion = "1.20.6"
const (
- rubyversion = "2.7.5"
+ rubyversion = "2.7.7"
bundlerversion = "2.2.19"
- singularityversion = "3.9.9"
+ singularityversion = "3.10.4"
pjsversion = "1.9.8"
geckoversion = "0.24.0"
gradleversion = "5.3.1"
- nodejsversion = "v12.22.11"
+ nodejsversion = "v12.22.12"
devtestDatabasePassword = "insecure_arvados_test"
- workbench2version = "2454ac35292a79594c32a80430740317ed5005cf"
)
//go:embed arvados.service
"default-jre-headless",
"gettext",
"libattr1-dev",
- "libcrypt-ssleay-perl",
"libfuse-dev",
+ "libgbm1", // cypress / workbench2 tests
"libgnutls28-dev",
- "libjson-perl",
"libpam-dev",
"libpcre3-dev",
"libpq-dev",
"libreadline-dev",
"libssl-dev",
- "libwww-perl",
"libxml2-dev",
"libxslt1-dev",
"linkchecker",
"uuid-dev",
"wget",
"xvfb",
+ "zlib1g-dev", // services/api
)
if test {
if osv.Debian && osv.Major <= 10 {
pkgs = append(pkgs, "iceweasel")
+ } else if osv.Debian && osv.Major >= 11 {
+ pkgs = append(pkgs, "firefox-esr")
} else {
pkgs = append(pkgs, "firefox")
}
}
if dev || test {
- pkgs = append(pkgs, "squashfs-tools") // for singularity
- pkgs = append(pkgs, "gnupg") // for docker install recipe
+ pkgs = append(pkgs,
+ "libglib2.0-dev", // singularity (conmon)
+ "libseccomp-dev", // singularity (seccomp)
+ "squashfs-tools", // singularity
+ "gnupg") // docker install recipe
}
switch {
case osv.Debian && osv.Major >= 11:
- pkgs = append(pkgs, "libcurl4", "perl-modules-5.32")
+ pkgs = append(pkgs, "g++", "libcurl4", "libcurl4-openssl-dev")
case osv.Debian && osv.Major >= 10:
- pkgs = append(pkgs, "libcurl4", "perl-modules")
- default:
- pkgs = append(pkgs, "libcurl3", "perl-modules")
+ pkgs = append(pkgs, "g++", "libcurl4", "libcurl4-openssl-dev")
+ case osv.Debian || osv.Ubuntu:
+ pkgs = append(pkgs, "g++", "libcurl3", "libcurl3-openssl-dev")
+ case osv.Centos:
+ pkgs = append(pkgs, "gcc", "gcc-c++", "libcurl-devel", "postgresql-devel")
}
cmd := exec.CommandContext(ctx, "apt-get")
if inst.EatMyData {
}
if dev || test {
- if havedockerversion, err := exec.Command("docker", "--version").CombinedOutput(); err == nil {
+ if havedockerversion, err2 := exec.Command("docker", "--version").CombinedOutput(); err2 == nil {
logger.Printf("%s installed, assuming that version is ok", bytes.TrimSuffix(havedockerversion, []byte("\n")))
} else if osv.Debian {
var codename string
codename = "buster"
case 11:
codename = "bullseye"
+ case 12:
+ codename = "bookworm"
default:
err = fmt.Errorf("don't know how to install docker-ce for debian %d", osv.Major)
return 1
err = fmt.Errorf("don't know how to install docker for osversion %v", osv)
return 1
}
+
+ err = inst.runBash(`
+key=fs.inotify.max_user_watches
+min=524288
+if [[ "$(sysctl --values "${key}")" -lt "${min}" ]]; then
+ sysctl "${key}=${min}"
+ # writing sysctl worked, so we should make it permanent
+ echo "${key}=${min}" | tee -a /etc/sysctl.conf
+ sysctl -p
+fi
+`, stdout, stderr)
+ if err != nil {
+ err = fmt.Errorf("couldn't set fs.inotify.max_user_watches value. (Is this a docker container? Fix this on the docker host by adding fs.inotify.max_user_watches=524288 to /etc/sysctl.conf and running `sysctl -p`)")
+ return 1
+ }
}
os.Mkdir("/var/lib/arvados", 0755)
tmp=/var/lib/arvados/tmp/singularity
trap "rm -r ${tmp}" ERR EXIT
cd /var/lib/arvados/tmp
-git clone https://github.com/sylabs/singularity
+git clone --recurse-submodules https://github.com/sylabs/singularity
cd singularity
git checkout v${S}
./mconfig --prefix=/var/lib/arvados
} else {
err = inst.runBash(`
NJS=`+nodejsversion+`
+rm -rf /var/lib/arvados/node-*-linux-x64
wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
ln -sfv /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
`, stdout, stderr)
return 1
}
}
-
- if havewb2version, err := exec.Command("git", "--git-dir=/var/lib/arvados/arvados-workbench2/.git", "log", "-n1", "--format=%H").CombinedOutput(); err == nil && string(havewb2version) == workbench2version+"\n" {
- logger.Print("workbench2 repo is already at " + workbench2version)
- } else {
- err = inst.runBash(`
-V=`+workbench2version+`
-cd /var/lib/arvados
-if [[ ! -e arvados-workbench2 ]]; then
- git clone https://git.arvados.org/arvados-workbench2.git
- cd arvados-workbench2
- git checkout $V
-else
- cd arvados-workbench2
- if ! git checkout $V; then
- git fetch
- git checkout yarn.lock
- git checkout $V
- fi
-fi
-rm -rf build
-`, stdout, stderr)
- if err != nil {
- return 1
- }
- }
-
- if err = inst.runBash(`
-cd /var/lib/arvados/arvados-workbench2
-yarn install
-`, stdout, stderr); err != nil {
- return 1
- }
}
if prod || pkg {
for _, srcdir := range []string{
"cmd/arvados-client",
"cmd/arvados-server",
- "services/crunch-dispatch-local",
- "services/crunch-dispatch-slurm",
} {
fmt.Fprintf(stderr, "building %s...\n", srcdir)
cmd := exec.Command("go", "install", "-ldflags", "-X git.arvados.org/arvados.git/lib/cmd.version="+inst.PackageVersion+" -X main.version="+inst.PackageVersion+" -s -w")
}
}
- // Symlink user-facing Go programs /usr/bin/x ->
- // /var/lib/arvados/bin/x
- for _, prog := range []string{"arvados-client", "arvados-server"} {
- err = os.Remove("/usr/bin/" + prog)
- if err != nil && !errors.Is(err, os.ErrNotExist) {
- return 1
- }
- err = os.Symlink("/var/lib/arvados/bin/"+prog, "/usr/bin/"+prog)
- if err != nil {
- return 1
- }
- }
-
// Copy assets from source tree to /var/lib/arvados/share
cmd := exec.Command("install", "-v", "-t", "/var/lib/arvados/share", filepath.Join(inst.SourcePath, "sdk/python/tests/nginx.conf"))
cmd.Stdout = stdout
return 1
}
+ // Install python SDK and arv-mount in
+ // /var/lib/arvados/lib/python.
+ //
+ // setup.py writes a file in the source directory in
+ // order to include the version number in the package
+ // itself. We don't want to write to the source tree
+ // (in "arvados-package" context it's mounted
+ // readonly) so we run setup.py in a temporary copy of
+ // the source dir.
+ if err = inst.runBash(`
+v=/var/lib/arvados/lib/python
+tmp=/var/lib/arvados/tmp/python
+python3 -m venv "$v"
+. "$v/bin/activate"
+pip3 install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
+export ARVADOS_BUILDING_VERSION="`+inst.PackageVersion+`"
+for src in "`+inst.SourcePath+`/sdk/python" "`+inst.SourcePath+`/services/fuse"; do
+ rsync -a --delete-after "$src/" "$tmp/"
+ cd "$tmp"
+ python3 setup.py install
+ cd ..
+ rm -rf "$tmp"
+done
+`, stdout, stderr); err != nil {
+ return 1
+ }
+
// Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
for dstdir, srcdir := range map[string]string{
"railsapi": "services/api",
{"touch", "log/production.log"},
{"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.bundle", "/var/www/.gem", "/var/www/.npm", "/var/www/.passenger", "log", "tmp", "vendor", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
{"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:" + bundlerversion},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem", "--without", "development test diagnostics performance"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "deployment", "true"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "path", "/var/www/.gem"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "without", "development test diagnostics performance"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--jobs", fmt.Sprintf("%d", runtime.NumCPU())},
{"chown", "www-data:www-data", ".", "public/assets"},
// {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "config", "set", "--local", "system", "true"},
- {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
- {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "npm:install"},
+ {"sudo", "-u", "www-data", "ARVADOS_CONFIG=none", "RAILS_GROUPS=assets", "RAILS_ENV=production", "PATH=/var/lib/arvados/bin:" + os.Getenv("PATH"), "/var/lib/arvados/bin/bundle", "exec", "rake", "assets:precompile"},
{"chown", "root:root", "."},
{"chown", "-R", "root:root", "public/assets", "vendor"},
// Install workbench2 app to /var/lib/arvados/workbench2/
if err = inst.runBash(`
-cd /var/lib/arvados/arvados-workbench2
-VERSION="`+inst.PackageVersion+`" BUILD_NUMBER=1 GIT_COMMIT="`+workbench2version[:9]+`" yarn build
+cd `+inst.SourcePath+`/services/workbench2
+VERSION="`+inst.PackageVersion+`" BUILD_NUMBER=1 GIT_COMMIT=000000000 yarn build
rsync -a --delete-after build/ /var/lib/arvados/workbench2/
`, stdout, stderr); err != nil {
return 1
}
+ // Install arvados-cli gem (binaries go in
+ // /var/lib/arvados/bin)
+ if err = inst.runBash(`
+/var/lib/arvados/bin/gem install --conservative --no-document arvados-cli
+`, stdout, stderr); err != nil {
+ return 1
+ }
+
err = os.WriteFile("/lib/systemd/system/arvados.service", arvadosServiceFile, 0777)
if err != nil {
return 1
}
- // This is equivalent to "systemd enable", but does
- // not depend on the systemctl program being
- // available.
- symlink := "/etc/systemd/system/multi-user.target.wants/arvados.service"
- err = os.Remove(symlink)
- if err != nil && !errors.Is(err, os.ErrNotExist) {
- return 1
+ if prod {
+ // (fpm will do this for us in the pkg case)
+ // This is equivalent to "systemd enable", but
+ // does not depend on the systemctl program
+ // being available:
+ symlink := "/etc/systemd/system/multi-user.target.wants/arvados.service"
+ err = os.Remove(symlink)
+ if err != nil && !errors.Is(err, os.ErrNotExist) {
+ return 1
+ }
+ err = os.Symlink("/lib/systemd/system/arvados.service", symlink)
+ if err != nil {
+ return 1
+ }
}
- err = os.Symlink("/lib/systemd/system/arvados.service", symlink)
- if err != nil {
- return 1
+
+ // Add symlinks in /usr/bin for user-facing programs
+ for _, srcdst := range [][]string{
+ // go
+ {"bin/arvados-client"},
+ {"bin/arvados-client", "arv"},
+ {"bin/arvados-server"},
+ // sdk/cli
+ {"bin/arv", "arv-ruby"},
+ {"bin/arv-tag"},
+ // sdk/python
+ {"lib/python/bin/arv-copy"},
+ {"lib/python/bin/arv-federation-migrate"},
+ {"lib/python/bin/arv-get"},
+ {"lib/python/bin/arv-keepdocker"},
+ {"lib/python/bin/arv-ls"},
+ {"lib/python/bin/arv-migrate-docker19"},
+ {"lib/python/bin/arv-normalize"},
+ {"lib/python/bin/arv-put"},
+ {"lib/python/bin/arv-ws"},
+ // services/fuse
+ {"lib/python/bin/arv-mount"},
+ } {
+ src := "/var/lib/arvados/" + srcdst[0]
+ if _, err = os.Stat(src); err != nil {
+ return 1
+ }
+ dst := srcdst[len(srcdst)-1]
+ _, dst = filepath.Split(dst)
+ dst = "/usr/bin/" + dst
+ err = os.Remove(dst)
+ if err != nil && !errors.Is(err, os.ErrNotExist) {
+ return 1
+ }
+ err = os.Symlink(src, dst)
+ if err != nil {
+ return 1
+ }
}
}
"libcurl3-gnutls",
"libxslt1.1",
"nginx",
- "python",
+ "python3",
"sudo",
}
if osv.Debian || osv.Ubuntu {
pkgs = append(pkgs, "python3-distutils") // sdk/cwl
}
return append(pkgs,
- "g++",
- "libcurl4-openssl-dev", // services/api
- "libpq-dev",
- "libpython2.7", // services/fuse
"mime-support", // keep-web
- "zlib1g-dev", // services/api
)
} else if osv.Centos {
return append(pkgs,
"fuse-libs", // services/fuse
- "gcc",
- "gcc-c++",
- "libcurl-devel", // services/api
- "mailcap", // keep-web
- "postgresql-devel", // services/api
+ "mailcap", // keep-web
)
} else {
panic("os version not supported")
projects / arvados.git / blobdiff