19070: Add --copy-deps/--no-copy-deps

[arvados.git] / sdk / cwl / arvados_cwl / arvcontainer.py

diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index e2c2f2e67bfef0b7b1bcd0f09f8cd1d212639f78..33b4c90c617711f6c2505bda1be35e93ed74137f 100644 (file)
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -247,7 +247,8 @@ class ArvadosContainer(JobBase):
                                                                     runtimeContext.project_uuid,
                                                                     runtimeContext.force_docker_pull,
                                                                     runtimeContext.tmp_outdir_prefix,
-                                                                    runtimeContext.match_local_docker)
+                                                                    runtimeContext.match_local_docker,
+                                                                    runtimeContext.copy_deps)
 
         network_req, _ = self.get_requirement("NetworkAccess")
         if network_req:
@@ -392,6 +393,10 @@ class ArvadosContainer(JobBase):
                     processStatus = "success"
                 else:
                     processStatus = "permanentFail"
+
+                if rcode == 137:
+                    logger.warning("%s Container may have been killed for using too much RAM.  Try resubmitting with a higher 'ramMin'.",
+                                 self.arvrunner.label(self))
             else:
                 processStatus = "permanentFail"