SLURM install guide notes slurm.conf path on Red Hat.

[arvados.git] / doc / install / install-compute-node.html.textile.liquid

diff --git a/doc/install/install-compute-node.html.textile.liquid b/doc/install/install-compute-node.html.textile.liquid
index afde1a8f2fd397e19fe9a9590b0ff5c6e2c4d51c..9a64ac76d79532d643a895a7df5d2f9971dfd2fc 100644 (file)
--- a/doc/install/install-compute-node.html.textile.liquid
+++ b/doc/install/install-compute-node.html.textile.liquid
@@ -8,22 +8,22 @@ h2. Install dependencies
 
 First, "add the appropriate package repository for your distribution":{{ site.baseurl }}/install/install-manual-prerequisites.html#repos.
 
+{% include 'note_python27_sc' %}
+
 On Debian-based systems:
 
 <notextile>
-<pre><code>~$ <span class="userinput">sudo apt-get install perl python-virtualenv fuse python-arvados-python-client python-arvados-fuse crunchstat iptables ca-certificates</span>
+<pre><code>~$ <span class="userinput">sudo apt-get install perl python-virtualenv fuse python-arvados-python-client python-arvados-fuse crunchstat arvados-docker-cleaner iptables ca-certificates</span>
 </code></pre>
 </notextile>
 
 On Red Hat-based systems:
 
 <notextile>
-<pre><code>~$ <span class="userinput">sudo yum install perl python27-python-virtualenv fuse python27-python-arvados-python-client python27-python-arvados-fuse crunchstat iptables ca-certificates</span>
+<pre><code>~$ <span class="userinput">sudo yum install perl python27-python-virtualenv fuse python27-python-arvados-python-client python27-python-arvados-fuse crunchstat arvados-docker-cleaner iptables ca-certificates</span>
 </code></pre>
 </notextile>
 
-{% include 'note_python27_sc' %}
-
 h2. Install Docker
 
 Compute nodes must have Docker installed to run jobs inside containers.  This requires a relatively recent version of Linux (at least upstream version 3.10, or a distribution version with the appropriate patches backported).  Follow the "Docker Engine installation documentation":https://docs.docker.com/ for your distribution.
@@ -54,7 +54,7 @@ Install SLURM following "the same process you used to install the Crunch dispatc
 
 h2. Copy configuration files from the dispatcher (API server)
 
-The @/etc/slurm-llnl/slurm.conf@ and @/etc/munge/munge.key@ files need to be identicaly across the dispatcher and all compute nodes. Copy the files you created in the "Install the Crunch dispatcher":install-crunch-dispatch.html step to this compute node.
+The @slurm.conf@ and @/etc/munge/munge.key@ files need to be identical across the dispatcher and all compute nodes. Copy the files you created in the "Install the Crunch dispatcher":install-crunch-dispatch.html step to this compute node.
 
 h2. Configure FUSE
 
@@ -74,7 +74,44 @@ user_allow_other
 </pre>
 </notextile>
 
-h2. Crunch user account
+h2. Configure the Docker cleaner
+
+The arvados-docker-cleaner program removes least recently used docker images as needed to keep disk usage below a configured limit.
+
+{% include 'notebox_begin' %}
+This also removes all containers as soon as they exit, as if they were run with @docker run --rm@. If you need to debug or inspect containers after they stop, temporarily stop arvados-docker-cleaner or run it with @--remove-stopped-containers never@.
+{% include 'notebox_end' %}
+
+Install runit to supervise the Docker cleaner daemon.  {% include 'install_runit' %}
+
+Configure runit to run the image cleaner using a suitable quota for your compute nodes and workload:
+
+<notextile>
+<pre><code>~$ <span class="userinput">sudo mkdir -p /etc/sv</span>
+~$ <span class="userinput">cd /etc/sv</span>
+/etc/sv$ <span class="userinput">sudo mkdir arvados-docker-cleaner; cd arvados-docker-cleaner</span>
+/etc/sv/arvados-docker-cleaner$ <span class="userinput">sudo mkdir log log/main</span>
+/etc/sv/arvados-docker-cleaner$ <span class="userinput">sudo sh -c 'cat &gt;log/run' &lt;&lt;'EOF'
+#!/bin/sh
+exec svlogd -tt main
+EOF</span>
+/etc/sv/arvados-docker-cleaner$ <span class="userinput">sudo sh -c 'cat &gt;run' &lt;&lt;'EOF'
+#!/bin/sh
+exec python3 -m arvados_docker.cleaner --quota <b>50G</b>
+EOF</span>
+/etc/sv/arvados-docker-cleaner$ <span class="userinput">sudo chmod +x run log/run</span>
+/etc/sv/arvados-docker-cleaner$ <span class="userinput">sudo ln -s "$(pwd)" /etc/service/</span>
+</code></pre>
+</notextile>
+
+If you are using a different daemon supervisor, or if you want to test the daemon in a terminal window, an equivalent shell command to run arvados-docker-cleaner is:
+
+<notextile>
+<pre><code><span class="userinput">python3 -m arvados_docker.cleaner --quota <b>50G</b></span>
+</code></pre>
+</notextile>
+
+h2. Add a Crunch user account
 
 Create a Crunch user account, and add it to the @fuse@ and @docker@ groups so it can use those tools:
 
@@ -108,7 +145,9 @@ set -e
 if ! test -f /root/node.json ; then
     python - &lt;&lt;EOF
 import arvados, json, socket
-node = arvados.api('v1').nodes().create(body={'hostname': socket.gethostname()}).execute()
+fqdn = socket.getfqdn()
+hostname, _, domain = fqdn.partition('.')
+node = arvados.api('v1').nodes().create(body={'hostname': hostname, 'domain': domain}).execute()
 with open('/root/node.json', 'w') as node_file:
     json.dump(node, node_file, indent=2)
 EOF
@@ -121,10 +160,10 @@ UUID=`grep \"uuid\" /root/node.json  |cut -f4 -d\"`
 PING_SECRET=`grep \"ping_secret\" /root/node.json  |cut -f4 -d\"`
 
 if ! test -f /etc/cron.d/node_ping ; then
-    echo "*/5 * * * * root /usr/bin/curl -k -d ping_secret=$PING_SECRET https://api/arvados/v1/nodes/$UUID/ping" > /etc/cron.d/node_ping
+    echo "*/5 * * * * root /usr/bin/curl -k -d ping_secret=$PING_SECRET https://$ARVADOS_API_HOST/arvados/v1/nodes/$UUID/ping" > /etc/cron.d/node_ping
 fi
 
-/usr/bin/curl -k -d ping_secret=$PING_SECRET https://api/arvados/v1/nodes/$UUID/ping?ping_secret=$PING_SECRET
+/usr/bin/curl -k -d ping_secret=$PING_SECRET https://$ARVADOS_API_HOST/arvados/v1/nodes/$UUID/ping?ping_secret=$PING_SECRET
 </code>
 </pre>
 </notextile>
@@ -138,4 +177,3 @@ And remove your token from the environment:
 </code>
 </pre>
 </notextile>
-