-\preformatted{collection <- Collection$new(arv, collectionUUID)\r
-writeFile <- collection$writeFile("myoutput.csv", file, istable = NULL) # csv\r
-writeFile <- collection$writeFile("myoutput.fasta", file, istable = NULL) # fasta\r
-writeFile <- collection$writeFile("myoutputtable.txt", file, istable = "yes") # txt table\r
-writeFile <- collection$writeFile("myoutputtext.txt", file, istable = "no") # txt text\r
-writeFile <- collection$writeFile("myoutputbinary.dat", file) # binary\r
-writeFile <- collection$writeFile("myoutputxlsx.xlsx", file) # xlsx\r
+\preformatted{\dontrun{\r
+collection <- Collection$new(arv, collectionUUID)\r
+writeFile <- collection$writeFile(name = "myoutput.csv", file = file, fileFormat = "csv", istable = NULL, collectionUUID = collectionUUID) # csv\r
+writeFile <- collection$writeFile(name = "myoutput.tsv", file = file, fileFormat = "tsv", istable = NULL, collectionUUID = collectionUUID) # tsv\r
+writeFile <- collection$writeFile(name = "myoutput.fasta", file = file, fileFormat = "fasta", istable = NULL, collectionUUID = collectionUUID) # fasta\r
+writeFile <- collection$writeFile(name = "myoutputtable.txt", file = file, fileFormat = "txt", istable = "yes", collectionUUID = collectionUUID) # txt table\r
+writeFile <- collection$writeFile(name = "myoutputtext.txt", file = file, fileFormat = "txt", istable = "no", collectionUUID = collectionUUID) # txt text\r
+writeFile <- collection$writeFile(name = "myoutputbinary.dat", file = file, fileFormat = "dat", collectionUUID = collectionUUID) # binary\r
+writeFile <- collection$writeFile(name = "myoutputxlsx.xlsx", file = file, fileFormat = "xlsx", collectionUUID = collectionUUID) # xlsx\r
+}\r