import os
import sys
import llfuse
-from llfuse import FUSEError
import errno
import stat
import threading
import json
import logging
import time
+import _strptime
import calendar
+import threading
+import itertools
+
+from arvados.util import portable_data_hash_pattern, uuid_pattern, collection_uuid_pattern, group_uuid_pattern, user_uuid_pattern, link_uuid_pattern
_logger = logging.getLogger('arvados.arvados_fuse')
+# Match any character which FUSE or Linux cannot accommodate as part
+# of a filename. (If present in a collection filename, they will
+# appear as underscores in the fuse mount.)
+_disallowed_filename_characters = re.compile('[\x00/]')
+
+class SafeApi(object):
+ """Threadsafe wrapper for API object.
+
+ This stores and returns a different api object per thread, because
+ httplib2 which underlies apiclient is not threadsafe.
+ """
+
+ def __init__(self, config):
+ self.host = config.get('ARVADOS_API_HOST')
+ self.api_token = config.get('ARVADOS_API_TOKEN')
+ self.insecure = config.flag_is_true('ARVADOS_API_HOST_INSECURE')
+ self.local = threading.local()
+ self.block_cache = arvados.KeepBlockCache()
+
+ def localapi(self):
+ if 'api' not in self.local.__dict__:
+ self.local.api = arvados.api(
+ version='v1',
+ host=self.host, token=self.api_token, insecure=self.insecure)
+ return self.local.api
+
+ def localkeep(self):
+ if 'keep' not in self.local.__dict__:
+ self.local.keep = arvados.KeepClient(api_client=self.localapi(), block_cache=self.block_cache)
+ return self.local.keep
+
+ def __getattr__(self, name):
+ # Proxy nonexistent attributes to the local API client.
+ try:
+ return getattr(self.localapi(), name)
+ except AttributeError:
+ return super(SafeApi, self).__getattr__(name)
+
+
def convertTime(t):
- return calendar.timegm(time.strptime(t, "%Y-%m-%dT%H:%M:%SZ"))
+ """Parse Arvados timestamp to unix time."""
+ if not t:
+ return 0
+ try:
+ return calendar.timegm(time.strptime(t, "%Y-%m-%dT%H:%M:%SZ"))
+ except (TypeError, ValueError):
+ return 0
def sanitize_filename(dirty):
- # http://www.dwheeler.com/essays/fixing-unix-linux-filenames.html
+ '''Replace disallowed filename characters with harmless "_".'''
if dirty is None:
return None
-
- fn = ""
- for c in dirty:
- if (c >= '\x00' and c <= '\x1f') or c == '\x7f' or c == '/':
- # skip control characters and /
- continue
- fn += c
-
- # strip leading - or ~ and leading/trailing whitespace
- stripped = fn.lstrip("-~ ").rstrip()
- if len(stripped) > 0:
- return stripped
+ elif dirty == '':
+ return '_'
+ elif dirty == '.':
+ return '_'
+ elif dirty == '..':
+ return '__'
else:
- return None
+ return _disallowed_filename_characters.sub('_', dirty)
class FreshBase(object):
self._stale = True
self._poll = False
self._last_update = time.time()
+ self._atime = time.time()
self._poll_time = 60
# Mark the value as stale
def invalidate(self):
self._stale = True
- # Test if the entries dict is stale
+ # Test if the entries dict is stale.
def stale(self):
if self._stale:
return True
if self._poll:
- return (self._last_update + self._poll_time) < time.time()
+ return (self._last_update + self._poll_time) < self._atime
return False
def fresh(self):
self._stale = False
self._last_update = time.time()
- def ctime(self):
- return 0
-
- def mtime(self):
- return 0
-
+ def atime(self):
+ return self._atime
class File(FreshBase):
'''Base for file objects.'''
- def __init__(self, parent_inode, _ctime=0, _mtime=0):
+ def __init__(self, parent_inode, _mtime=0):
super(File, self).__init__()
self.inode = None
self.parent_inode = parent_inode
- self._ctime = _ctime
self._mtime = _mtime
def size(self):
def readfrom(self, off, size):
return ''
- def ctime(self):
- return self._ctime
-
def mtime(self):
return self._mtime
class StreamReaderFile(File):
'''Wraps a StreamFileReader as a file.'''
- def __init__(self, parent_inode, reader, _ctime, _mtime):
- super(StreamReaderFile, self).__init__(parent_inode, _ctime, _mtime)
+ def __init__(self, parent_inode, reader, _mtime):
+ super(StreamReaderFile, self).__init__(parent_inode, _mtime)
self.reader = reader
def size(self):
class StringFile(File):
'''Wrap a simple string as a file'''
- def __init__(self, parent_inode, contents, _ctime, _mtime):
- super(StringFile, self).__init__(parent_inode, _ctime, _mtime)
+ def __init__(self, parent_inode, contents, _mtime):
+ super(StringFile, self).__init__(parent_inode, _mtime)
self.contents = contents
def size(self):
return len(self.contents)
def readfrom(self, off, size):
- return self.contents[off:(off+size)]
+ return self.contents[off:(off+size)]
+
class ObjectFile(StringFile):
'''Wrap a dict as a serialized json object.'''
- def __init__(self, parent_inode, contents):
- super(ObjectFile, self).__init__(parent_inode, json.dumps(self.contentsdict, indent=4, sort_keys=True))
- self.contentsdict = contents
- self.uuid = self.contentsdict['uuid']
+ def __init__(self, parent_inode, obj):
+ super(ObjectFile, self).__init__(parent_inode, "", 0)
+ self.uuid = obj['uuid']
+ self.update(obj)
+
+ def update(self, obj):
+ self._mtime = convertTime(obj['modified_at']) if 'modified_at' in obj else 0
+ self.contents = json.dumps(obj, indent=4, sort_keys=True) + "\n"
class Directory(FreshBase):
raise Exception("parent_inode should be an int")
self.parent_inode = parent_inode
self._entries = {}
+ self._mtime = time.time()
# Overriden by subclasses to implement logic to update the entries dict
# when the directory is stale
oldentries = self._entries
self._entries = {}
+ changed = False
for i in items:
name = sanitize_filename(fn(i))
if name:
ent = new_entry(i)
if ent is not None:
self._entries[name] = self.inodes.add_entry(ent)
+ changed = True
# delete any other directory entries that were not in found in 'items'
- for i in oldentries:
+ for i in oldentries:
llfuse.invalidate_entry(self.inode, str(i))
self.inodes.del_entry(oldentries[i])
+ changed = True
+
+ if changed:
+ self._mtime = time.time()
+
self.fresh()
def clear(self):
n.clear()
llfuse.invalidate_entry(self.inode, str(n))
self.inodes.del_entry(oldentries[n])
+ llfuse.invalidate_inode(self.inode)
self.invalidate()
+ def mtime(self):
+ return self._mtime
+
class CollectionDirectory(Directory):
'''Represents the root of a directory tree holding a collection.'''
- def __init__(self, parent_inode, inodes, api, collection_locator):
+ def __init__(self, parent_inode, inodes, api, num_retries, collection):
super(CollectionDirectory, self).__init__(parent_inode)
self.inodes = inodes
self.api = api
- self.collection_locator = collection_locator
- self.manifest_text_file = None
- self.pdh_file = None
+ self.num_retries = num_retries
+ self.collection_object_file = None
self.collection_object = None
+ if isinstance(collection, dict):
+ self.collection_locator = collection['uuid']
+ self._mtime = convertTime(collection.get('modified_at'))
+ else:
+ self.collection_locator = collection
+ self._mtime = 0
def same(self, i):
return i['uuid'] == self.collection_locator or i['portable_data_hash'] == self.collection_locator
+ # Used by arv-web.py to switch the contents of the CollectionDirectory
+ def change_collection(self, new_locator):
+ """Switch the contents of the CollectionDirectory. Must be called with llfuse.lock held."""
+ self.collection_locator = new_locator
+ self.collection_object = None
+ self.update()
+
+ def new_collection(self, new_collection_object, coll_reader):
+ self.collection_object = new_collection_object
+
+ self._mtime = convertTime(self.collection_object.get('modified_at'))
+
+ if self.collection_object_file is not None:
+ self.collection_object_file.update(self.collection_object)
+
+ self.clear()
+ for s in coll_reader.all_streams():
+ cwd = self
+ for part in s.name().split('/'):
+ if part != '' and part != '.':
+ partname = sanitize_filename(part)
+ if partname not in cwd._entries:
+ cwd._entries[partname] = self.inodes.add_entry(Directory(cwd.inode))
+ cwd = cwd._entries[partname]
+ for k, v in s.files().items():
+ cwd._entries[sanitize_filename(k)] = self.inodes.add_entry(StreamReaderFile(cwd.inode, v, self.mtime()))
+
def update(self):
try:
- new_collection_object = self.api.collections().get(uuid=self.collection_locator).execute()
- if "portable_data_hash" not in new_collection_object:
- new_collection_object["portable_data_hash"] = new_collection_object["uuid"]
+ if self.collection_object is not None and portable_data_hash_pattern.match(self.collection_locator):
+ return True
+
+ if self.collection_locator is None:
+ self.fresh()
+ return True
+
+ with llfuse.lock_released:
+ coll_reader = arvados.CollectionReader(
+ self.collection_locator, self.api, self.api.localkeep(),
+ num_retries=self.num_retries)
+ new_collection_object = coll_reader.api_response() or {}
+ # If the Collection only exists in Keep, there will be no API
+ # response. Fill in the fields we need.
+ if 'uuid' not in new_collection_object:
+ new_collection_object['uuid'] = self.collection_locator
+ if "portable_data_hash" not in new_collection_object:
+ new_collection_object["portable_data_hash"] = new_collection_object["uuid"]
+ if 'manifest_text' not in new_collection_object:
+ new_collection_object['manifest_text'] = coll_reader.manifest_text()
+ coll_reader.normalize()
+ # end with llfuse.lock_released, re-acquire lock
if self.collection_object is None or self.collection_object["portable_data_hash"] != new_collection_object["portable_data_hash"]:
- self.collection_object = new_collection_object
-
- if self.manifest_text_file is not None:
- self.manifest_text_file.contents = self.collection_object["manifest_text"]
- self.manifest_text_file._ctime = self.ctime()
- self.manifest_text_file._mtime = self.mtime()
- if self.pdh_file is not None:
- self.pdh_file.contents = self.collection_object["portable_data_hash"]
- self.pdh_file._ctime = self.ctime()
- self.pdh_file._mtime = self.mtime()
-
- self.clear()
- collection = arvados.CollectionReader(self.collection_object["manifest_text"], self.api)
- for s in collection.all_streams():
- cwd = self
- for part in s.name().split('/'):
- if part != '' and part != '.':
- partname = sanitize_filename(part)
- if partname not in cwd._entries:
- cwd._entries[partname] = self.inodes.add_entry(Directory(cwd.inode))
- cwd = cwd._entries[partname]
- for k, v in s.files().items():
- cwd._entries[sanitize_filename(k)] = self.inodes.add_entry(StreamReaderFile(cwd.inode, v, self.ctime(), self.mtime()))
+ self.new_collection(new_collection_object, coll_reader)
+
self.fresh()
return True
- except Exception as detail:
- _logger.error("arv-mount %s: error", self.collection_locator)
- _logger.exception(detail)
- return False
+ except arvados.errors.NotFoundError:
+ _logger.exception("arv-mount %s: error", self.collection_locator)
+ except arvados.errors.ArgumentError as detail:
+ _logger.warning("arv-mount %s: error %s", self.collection_locator, detail)
+ if self.collection_object is not None and "manifest_text" in self.collection_object:
+ _logger.warning("arv-mount manifest_text is: %s", self.collection_object["manifest_text"])
+ except Exception:
+ _logger.exception("arv-mount %s: error", self.collection_locator)
+ if self.collection_object is not None and "manifest_text" in self.collection_object:
+ _logger.error("arv-mount manifest_text is: %s", self.collection_object["manifest_text"])
+ return False
def __getitem__(self, item):
self.checkupdate()
- if item == '.manifest_text':
- if self.manifest_text_file is None:
- self.manifest_text_file = StringFile(self.inode, self.collection_object["manifest_text"], self.ctime(), self.mtime())
- self.inodes.add_entry(self.manifest_text_file)
- return self.manifest_text_file
- elif item == '.portable_data_hash':
- if self.pdh_file is None:
- self.pdh_file = StringFile(self.inode, self.collection_object["portable_data_hash"], self.ctime(), self.mtime())
- print self.ctime
- print self.pdh_file._ctime
- self.inodes.add_entry(self.pdh_file)
- return self.pdh_file
+ if item == '.arvados#collection':
+ if self.collection_object_file is None:
+ self.collection_object_file = ObjectFile(self.inode, self.collection_object)
+ self.inodes.add_entry(self.collection_object_file)
+ return self.collection_object_file
else:
return super(CollectionDirectory, self).__getitem__(item)
def __contains__(self, k):
- if k == '.manifest_text' or '.portable_data_hash':
+ if k == '.arvados#collection':
return True
else:
return super(CollectionDirectory, self).__contains__(k)
- def ctime(self):
- self.checkupdate()
- return convertTime(self.collection_object["created_at"])
-
- def mtime(self):
- self.checkupdate()
- return convertTime(self.collection_object["modified_at"])
class MagicDirectory(Directory):
'''A special directory that logically contains the set of all extant keep
to readdir().
'''
- def __init__(self, parent_inode, inodes, api):
+ README_TEXT = '''
+This directory provides access to Arvados collections as subdirectories listed
+by uuid (in the form 'zzzzz-4zz18-1234567890abcde') or portable data hash (in
+the form '1234567890abcdefghijklmnopqrstuv+123').
+
+Note that this directory will appear empty until you attempt to access a
+specific collection subdirectory (such as trying to 'cd' into it), at which
+point the collection will actually be looked up on the server and the directory
+will appear if it exists.
+'''.lstrip()
+
+ def __init__(self, parent_inode, inodes, api, num_retries):
super(MagicDirectory, self).__init__(parent_inode)
self.inodes = inodes
self.api = api
+ self.num_retries = num_retries
+
+ def __setattr__(self, name, value):
+ super(MagicDirectory, self).__setattr__(name, value)
+ # When we're assigned an inode, add a README.
+ if ((name == 'inode') and (self.inode is not None) and
+ (not self._entries)):
+ self._entries['README'] = self.inodes.add_entry(
+ StringFile(self.inode, self.README_TEXT, time.time()))
+ # If we're the root directory, add an identical by_id subdirectory.
+ if self.inode == llfuse.ROOT_INODE:
+ self._entries['by_id'] = self.inodes.add_entry(MagicDirectory(
+ self.inode, self.inodes, self.api, self.num_retries))
def __contains__(self, k):
if k in self._entries:
return True
+
+ if not portable_data_hash_pattern.match(k) and not uuid_pattern.match(k):
+ return False
+
try:
- e = self.inodes.add_entry(CollectionDirectory(self.inode, self.inodes, self.api, k))
+ e = self.inodes.add_entry(CollectionDirectory(
+ self.inode, self.inodes, self.api, self.num_retries, k))
if e.update():
self._entries[k] = e
return True
else:
raise KeyError("No collection with id " + item)
+
class RecursiveInvalidateDirectory(Directory):
def invalidate(self):
if self.inode == llfuse.ROOT_INODE:
super(RecursiveInvalidateDirectory, self).invalidate()
for a in self._entries:
self._entries[a].invalidate()
- except Exception as e:
- _logger.exception(e)
+ except Exception:
+ _logger.exception()
finally:
if self.inode == llfuse.ROOT_INODE:
llfuse.lock.release()
+
class TagsDirectory(RecursiveInvalidateDirectory):
'''A special directory that contains as subdirectories all tags visible to the user.'''
- def __init__(self, parent_inode, inodes, api, poll_time=60):
+ def __init__(self, parent_inode, inodes, api, num_retries, poll_time=60):
super(TagsDirectory, self).__init__(parent_inode)
self.inodes = inodes
self.api = api
- try:
- arvados.events.subscribe(self.api, [['object_uuid', 'is_a', 'arvados#link']], lambda ev: self.invalidate())
- except:
- self._poll = True
- self._poll_time = poll_time
+ self.num_retries = num_retries
+ self._poll = True
+ self._poll_time = poll_time
def update(self):
- tags = self.api.links().list(filters=[['link_class', '=', 'tag']], select=['name'], distinct = True).execute()
+ with llfuse.lock_released:
+ tags = self.api.links().list(
+ filters=[['link_class', '=', 'tag']],
+ select=['name'], distinct=True
+ ).execute(num_retries=self.num_retries)
if "items" in tags:
self.merge(tags['items'],
- lambda i: i['name'] if 'name' in i else i['uuid'],
- lambda a, i: a.tag == i,
- lambda i: TagDirectory(self.inode, self.inodes, self.api, i['name'], poll=self._poll, poll_time=self._poll_time))
+ lambda i: i['name'],
+ lambda a, i: a.tag == i['name'],
+ lambda i: TagDirectory(self.inode, self.inodes, self.api, self.num_retries, i['name'], poll=self._poll, poll_time=self._poll_time))
+
class TagDirectory(Directory):
'''A special directory that contains as subdirectories all collections visible
to the user that are tagged with a particular tag.
'''
- def __init__(self, parent_inode, inodes, api, tag, poll=False, poll_time=60):
+ def __init__(self, parent_inode, inodes, api, num_retries, tag,
+ poll=False, poll_time=60):
super(TagDirectory, self).__init__(parent_inode)
self.inodes = inodes
self.api = api
+ self.num_retries = num_retries
self.tag = tag
self._poll = poll
self._poll_time = poll_time
def update(self):
- taggedcollections = self.api.links().list(filters=[['link_class', '=', 'tag'],
- ['name', '=', self.tag],
- ['head_uuid', 'is_a', 'arvados#collection']],
- select=['head_uuid']).execute()
+ with llfuse.lock_released:
+ taggedcollections = self.api.links().list(
+ filters=[['link_class', '=', 'tag'],
+ ['name', '=', self.tag],
+ ['head_uuid', 'is_a', 'arvados#collection']],
+ select=['head_uuid']
+ ).execute(num_retries=self.num_retries)
self.merge(taggedcollections['items'],
lambda i: i['head_uuid'],
lambda a, i: a.collection_locator == i['head_uuid'],
- lambda i: CollectionDirectory(self.inode, self.inodes, self.api, i['head_uuid']))
+ lambda i: CollectionDirectory(self.inode, self.inodes, self.api, self.num_retries, i['head_uuid']))
-class ProjectDirectory(RecursiveInvalidateDirectory):
+class ProjectDirectory(Directory):
'''A special directory that contains the contents of a project.'''
- def __init__(self, parent_inode, inodes, api, project_object, poll=False, poll_time=60):
+ def __init__(self, parent_inode, inodes, api, num_retries, project_object,
+ poll=False, poll_time=60):
super(ProjectDirectory, self).__init__(parent_inode)
self.inodes = inodes
self.api = api
+ self.num_retries = num_retries
self.project_object = project_object
+ self.project_object_file = None
self.uuid = project_object['uuid']
+ self._poll = poll
+ self._poll_time = poll_time
def createDirectory(self, i):
- if re.match(r'[a-z0-9]{5}-4zz18-[a-z0-9]{15}', i['uuid']):
- return CollectionDirectory(self.inode, self.inodes, self.api, i['uuid'])
- elif re.match(r'[a-z0-9]{5}-j7d0g-[a-z0-9]{15}', i['uuid']):
- return ProjectDirectory(self.inode, self.inodes, self.api, i, self._poll, self._poll_time)
- elif re.match(r'[a-z0-9]{5}-o0j2j-[a-z0-9]{15}', i['uuid']) and i['head_kind'] == 'arvados#collection':
- return CollectionDirectory(self.inode, self.inodes, self.api, i['head_uuid'])
- #elif re.match(r'[a-z0-9]{5}-8i9sb-[a-z0-9]{15}', i['uuid']):
- # return None
- #elif re.match(r'[a-z0-9]{5}-[a-z0-9]{5}-[a-z0-9]{15}', i['uuid']):
- # return ObjectFile(self.parent_inode, i)
+ if collection_uuid_pattern.match(i['uuid']):
+ return CollectionDirectory(self.inode, self.inodes, self.api, self.num_retries, i)
+ elif group_uuid_pattern.match(i['uuid']):
+ return ProjectDirectory(self.inode, self.inodes, self.api, self.num_retries, i, self._poll, self._poll_time)
+ elif link_uuid_pattern.match(i['uuid']):
+ if i['head_kind'] == 'arvados#collection' or portable_data_hash_pattern.match(i['head_uuid']):
+ return CollectionDirectory(self.inode, self.inodes, self.api, self.num_retries, i['head_uuid'])
+ else:
+ return None
+ elif uuid_pattern.match(i['uuid']):
+ return ObjectFile(self.parent_inode, i)
else:
return None
def update(self):
- def same(a, i):
+ if self.project_object_file == None:
+ self.project_object_file = ObjectFile(self.inode, self.project_object)
+ self.inodes.add_entry(self.project_object_file)
+
+ def namefn(i):
+ if 'name' in i:
+ if i['name'] is None or len(i['name']) == 0:
+ return None
+ elif collection_uuid_pattern.match(i['uuid']) or group_uuid_pattern.match(i['uuid']):
+ # collection or subproject
+ return i['name']
+ elif link_uuid_pattern.match(i['uuid']) and i['head_kind'] == 'arvados#collection':
+ # name link
+ return i['name']
+ elif 'kind' in i and i['kind'].startswith('arvados#'):
+ # something else
+ return "{}.{}".format(i['name'], i['kind'][8:])
+ else:
+ return None
+
+ def samefn(a, i):
if isinstance(a, CollectionDirectory):
return a.collection_locator == i['uuid']
elif isinstance(a, ProjectDirectory):
return a.uuid == i['uuid'] and not a.stale()
return False
- if re.match(r'[a-z0-9]{5}-j7d0g-[a-z0-9]{15}', self.uuid):
- self.project_object = self.api.groups().get(uuid=self.uuid).execute()
- elif re.match(r'[a-z0-9]{5}-tpzed-[a-z0-9]{15}', self.uuid):
- self.project_object = self.api.users().get(uuid=self.uuid).execute()
+ with llfuse.lock_released:
+ if group_uuid_pattern.match(self.uuid):
+ self.project_object = self.api.groups().get(
+ uuid=self.uuid).execute(num_retries=self.num_retries)
+ elif user_uuid_pattern.match(self.uuid):
+ self.project_object = self.api.users().get(
+ uuid=self.uuid).execute(num_retries=self.num_retries)
- contents = arvados.util.list_all(self.api.groups().contents, uuid=self.uuid)
+ contents = arvados.util.list_all(self.api.groups().contents,
+ self.num_retries, uuid=self.uuid)
+ # Name links will be obsolete soon, take this out when there are no more pre-#3036 in use.
+ contents += arvados.util.list_all(
+ self.api.links().list, self.num_retries,
+ filters=[['tail_uuid', '=', self.uuid],
+ ['link_class', '=', 'name']])
- # Name links will be obsolete soon, take this out when there are no more pre-#3036 in use.
- contents += arvados.util.list_all(self.api.links().list, filters=[['tail_uuid', '=', self.uuid], ['link_class', '=', 'name']])
+ # end with llfuse.lock_released, re-acquire lock
self.merge(contents,
- lambda i: i['name'] if 'name' in i and i['name'] is not None and len(i['name']) > 0 else i['uuid'],
- same,
+ namefn,
+ samefn,
self.createDirectory)
- def ctime(self):
- return convertTime(self.project_object["created_at"]) if "created_at" in self.project_object else 0
-
- def mtime(self):
- return convertTime(self.project_object["modified_at"]) if "modified_at" in self.project_object else 0
+ def __getitem__(self, item):
+ self.checkupdate()
+ if item == '.arvados#project':
+ return self.project_object_file
+ else:
+ return super(ProjectDirectory, self).__getitem__(item)
+ def __contains__(self, k):
+ if k == '.arvados#project':
+ return True
+ else:
+ return super(ProjectDirectory, self).__contains__(k)
-class HomeDirectory(RecursiveInvalidateDirectory):
+class SharedDirectory(Directory):
'''A special directory that represents users or groups who have shared projects with me.'''
- def __init__(self, parent_inode, inodes, api, poll=False, poll_time=60):
- super(HomeDirectory, self).__init__(parent_inode)
- self.current_user = api.users().current().execute()
+ def __init__(self, parent_inode, inodes, api, num_retries, exclude,
+ poll=False, poll_time=60):
+ super(SharedDirectory, self).__init__(parent_inode)
self.inodes = inodes
self.api = api
-
- # try:
- # arvados.events.subscribe(self.api, [], lambda ev: self.invalidate())
- # except:
- # self._poll = True
- # self._poll_time = poll_time
+ self.num_retries = num_retries
+ self.current_user = api.users().current().execute(num_retries=num_retries)
+ self._poll = True
+ self._poll_time = poll_time
def update(self):
- all_projects = arvados.util.list_all(self.api.groups().list, filters=[['group_class','=','project']])
- objects = {}
- for ob in all_projects:
- objects[ob['uuid']] = ob
-
- roots = []
- root_owners = {}
- for ob in all_projects:
- if ob['owner_uuid'] == self.current_user['uuid'] or ob['owner_uuid'] not in objects:
- roots.append(ob)
- root_owners[ob['owner_uuid']] = True
-
- lusers = arvados.util.list_all(self.api.users().list, filters=[['uuid','in', list(root_owners)]])
- lgroups = arvados.util.list_all(self.api.groups().list, filters=[['uuid','in', list(root_owners)]])
-
- users = {}
- groups = {}
-
- for l in lusers:
- objects[l["uuid"]] = l
- for l in lgroups:
- objects[l["uuid"]] = l
-
- contents = {}
- for r in root_owners:
- if r in objects:
- obr = objects[r]
- if "name" in obr:
- contents[obr["name"]] = obr
- if "first_name" in obr:
- contents[u"{} {}".format(obr["first_name"], obr["last_name"])] = obr
-
- for r in roots:
- if r['owner_uuid'] not in objects:
- contents[r['name']] = r
-
+ with llfuse.lock_released:
+ all_projects = arvados.util.list_all(
+ self.api.groups().list, self.num_retries,
+ filters=[['group_class','=','project']])
+ objects = {}
+ for ob in all_projects:
+ objects[ob['uuid']] = ob
+
+ roots = []
+ root_owners = {}
+ for ob in all_projects:
+ if ob['owner_uuid'] != self.current_user['uuid'] and ob['owner_uuid'] not in objects:
+ roots.append(ob)
+ root_owners[ob['owner_uuid']] = True
+
+ lusers = arvados.util.list_all(
+ self.api.users().list, self.num_retries,
+ filters=[['uuid','in', list(root_owners)]])
+ lgroups = arvados.util.list_all(
+ self.api.groups().list, self.num_retries,
+ filters=[['uuid','in', list(root_owners)]])
+
+ users = {}
+ groups = {}
+
+ for l in lusers:
+ objects[l["uuid"]] = l
+ for l in lgroups:
+ objects[l["uuid"]] = l
+
+ contents = {}
+ for r in root_owners:
+ if r in objects:
+ obr = objects[r]
+ if "name" in obr:
+ contents[obr["name"]] = obr
+ if "first_name" in obr:
+ contents[u"{} {}".format(obr["first_name"], obr["last_name"])] = obr
+
+ for r in roots:
+ if r['owner_uuid'] not in objects:
+ contents[r['name']] = r
+
+ # end with llfuse.lock_released, re-acquire lock
+
try:
self.merge(contents.items(),
lambda i: i[0],
lambda a, i: a.uuid == i[1]['uuid'],
- lambda i: ProjectDirectory(self.inode, self.inodes, self.api, i[1], poll=self._poll, poll_time=self._poll_time))
- except Exception as e:
- _logger.exception(e)
+ lambda i: ProjectDirectory(self.inode, self.inodes, self.api, self.num_retries, i[1], poll=self._poll, poll_time=self._poll_time))
+ except Exception:
+ _logger.exception()
- #def contents(self):
- # return self.api.groups().contents(uuid=self.uuid).execute()['items']
class FileHandle(object):
'''Connects a numeric file handle to a File or Directory object that has
def __init__(self):
self._entries = {}
- self._counter = llfuse.ROOT_INODE
+ self._counter = itertools.count(llfuse.ROOT_INODE)
def __getitem__(self, item):
return self._entries[item]
return k in self._entries
def add_entry(self, entry):
- entry.inode = self._counter
+ entry.inode = next(self._counter)
self._entries[entry.inode] = entry
- self._counter += 1
return entry
def del_entry(self, entry):
llfuse has its own global lock which is acquired before calling a request handler,
so request handlers do not run concurrently unless the lock is explicitly released
- with llfuse.lock_released.'''
+ using "with llfuse.lock_released:"'''
- def __init__(self, uid, gid):
+ def __init__(self, uid, gid, encoding="utf-8"):
super(Operations, self).__init__()
self.inodes = Inodes()
self.uid = uid
self.gid = gid
+ self.encoding = encoding
# dict of inode to filehandle
self._filehandles = {}
entry.st_mode = stat.S_IRUSR | stat.S_IRGRP | stat.S_IROTH
if isinstance(e, Directory):
entry.st_mode |= stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH | stat.S_IFDIR
+ elif isinstance(e, StreamReaderFile):
+ entry.st_mode |= stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH | stat.S_IFREG
else:
entry.st_mode |= stat.S_IFREG
entry.st_size = e.size()
- entry.st_blksize = 1024
- entry.st_blocks = e.size()/1024
- if e.size()/1024 != 0:
- entry.st_blocks += 1
- entry.st_atime = 0
- entry.st_mtime = e.mtime()
- entry.st_ctime = e.ctime()
+ entry.st_blksize = 512
+ entry.st_blocks = (e.size()/512)+1
+ entry.st_atime = int(e.atime())
+ entry.st_mtime = int(e.mtime())
+ entry.st_ctime = int(e.mtime())
return entry
def lookup(self, parent_inode, name):
+ name = unicode(name, self.encoding)
_logger.debug("arv-mount lookup: parent_inode %i name %s",
parent_inode, name)
inode = None
p = self.inodes[parent_inode]
if name == '..':
inode = p.parent_inode
- elif name in p:
+ elif isinstance(p, Directory) and name in p:
inode = p[name].inode
if inode != None:
else:
raise llfuse.FUSEError(errno.EBADF)
+ # update atime
+ handle.entry._atime = time.time()
+
try:
with llfuse.lock_released:
return handle.entry.readfrom(off, size)
- except:
+ except arvados.errors.NotFoundError as e:
+ _logger.warning("Block not found: " + str(e))
+ raise llfuse.FUSEError(errno.EIO)
+ except Exception:
+ _logger.exception()
raise llfuse.FUSEError(errno.EIO)
def release(self, fh):
else:
raise llfuse.FUSEError(errno.EIO)
+ # update atime
+ p._atime = time.time()
+
self._filehandles[fh] = FileHandle(fh, [('.', p), ('..', parent)] + list(p.items()))
return fh
e = off
while e < len(handle.entry):
if handle.entry[e][1].inode in self.inodes:
- yield (handle.entry[e][0], self.getattr(handle.entry[e][1].inode), e+1)
+ try:
+ yield (handle.entry[e][0].encode(self.encoding), self.getattr(handle.entry[e][1].inode), e+1)
+ except UnicodeEncodeError:
+ pass
e += 1
def releasedir(self, fh):
def statfs(self):
st = llfuse.StatvfsData()
- st.f_bsize = 1024 * 1024
+ st.f_bsize = 64 * 1024
st.f_blocks = 0
st.f_files = 0
projects / arvados.git / blobdiff