- user/topics/keep.html.textile.liquid
- user/topics/arv-copy.html.textile.liquid
- Using Common Workflow Language:
- - user/cwl/intro-cwl.html.textile.liquid
- user/cwl/cwl-runner.html.textile.liquid
+ - user/cwl/cwl-style.html.textile.liquid
- Working on the command line:
- user/topics/running-pipeline-command-line.html.textile.liquid
- user/topics/arv-run.html.textile.liquid
api:
- Concepts:
- api/index.html.textile.liquid
- - api/authentication.html.textile.liquid
+ - api/requests.html.textile.liquid
- api/methods.html.textile.liquid
- api/resources.html.textile.liquid
- - api/crunch-scripts.html.textile.liquid
- api/permission-model.html.textile.liquid
- - API Methods:
+ - Permission and authentication:
+ - api/methods/users.html.textile.liquid
+ - api/methods/groups.html.textile.liquid
- api/methods/api_client_authorizations.html.textile.liquid
- api/methods/api_clients.html.textile.liquid
- api/methods/authorized_keys.html.textile.liquid
- - api/methods/collections.html.textile.liquid
- - api/methods/groups.html.textile.liquid
- - api/methods/humans.html.textile.liquid
- - api/methods/jobs.html.textile.liquid
- - api/methods/job_tasks.html.textile.liquid
- - api/methods/keep_disks.html.textile.liquid
+ - System resources:
- api/methods/keep_services.html.textile.liquid
- api/methods/links.html.textile.liquid
- api/methods/logs.html.textile.liquid
- api/methods/nodes.html.textile.liquid
+ - api/methods/virtual_machines.html.textile.liquid
+ - api/methods/keep_disks.html.textile.liquid
+ - Data management:
+ - api/methods/collections.html.textile.liquid
+ - api/methods/repositories.html.textile.liquid
+ - Container engine:
+ - api/methods/container_requests.html.textile.liquid
+ - api/methods/containers.html.textile.liquid
+ - api/methods/workflows.html.textile.liquid
+ - Jobs engine (deprecated):
+ - api/crunch-scripts.html.textile.liquid
+ - api/methods/jobs.html.textile.liquid
+ - api/methods/job_tasks.html.textile.liquid
- api/methods/pipeline_instances.html.textile.liquid
- api/methods/pipeline_templates.html.textile.liquid
- - api/methods/repositories.html.textile.liquid
+ - Metadata for bioinformatics:
+ - api/methods/humans.html.textile.liquid
- api/methods/specimens.html.textile.liquid
- api/methods/traits.html.textile.liquid
- - api/methods/users.html.textile.liquid
- - api/methods/virtual_machines.html.textile.liquid
- - Schema:
- - api/schema/ApiClientAuthorization.html.textile.liquid
- - api/schema/ApiClient.html.textile.liquid
- - api/schema/AuthorizedKey.html.textile.liquid
- - api/schema/Collection.html.textile.liquid
- - api/schema/Group.html.textile.liquid
- - api/schema/Human.html.textile.liquid
- - api/schema/Job.html.textile.liquid
- - api/schema/JobTask.html.textile.liquid
- - api/schema/KeepDisk.html.textile.liquid
- - api/schema/KeepService.html.textile.liquid
- - api/schema/Link.html.textile.liquid
- - api/schema/Log.html.textile.liquid
- - api/schema/Node.html.textile.liquid
- - api/schema/PipelineInstance.html.textile.liquid
- - api/schema/PipelineTemplate.html.textile.liquid
- - api/schema/Repository.html.textile.liquid
- - api/schema/Specimen.html.textile.liquid
- - api/schema/Trait.html.textile.liquid
- - api/schema/User.html.textile.liquid
- - api/schema/VirtualMachine.html.textile.liquid
installguide:
- Overview:
- install/index.html.textile.liquid