+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
class WorkUnitsController < ApplicationController
+ skip_around_filter :require_thread_api_token, if: proc { |ctrl|
+ Rails.configuration.anonymous_user_token and
+ 'show_child_component' == ctrl.action_name
+ }
+
def find_objects_for_index
# If it's not the index rows partial display, just return
# The /index request will again be invoked to display the
@limit = 20
@filters = @filters || []
+ pipelines = []
+ jobs = []
+
# get next page of pipeline_instances
- filters = @filters + [["uuid", "is_a", ["arvados#pipelineInstance"]]]
- pipelines = PipelineInstance.limit(@limit).order(["created_at desc"]).filter(filters)
+ if PipelineInstance.api_exists?(:index)
+ filters = @filters + [["uuid", "is_a", ["arvados#pipelineInstance"]]]
+ pipelines = PipelineInstance.limit(@limit).order(["created_at desc"]).filter(filters)
+ end
- # get next page of jobs
- filters = @filters + [["uuid", "is_a", ["arvados#job"]]]
- jobs = Job.limit(@limit).order(["created_at desc"]).filter(filters)
+ if params[:show_children]
+ # get next page of jobs
+ if Job.api_exists?(:index)
+ filters = @filters + [["uuid", "is_a", ["arvados#job"]]]
+ jobs = Job.limit(@limit).order(["created_at desc"]).filter(filters)
+ end
+ end
# get next page of container_requests
filters = @filters + [["uuid", "is_a", ["arvados#containerRequest"]]]
+ if !params[:show_children]
+ filters << ["requesting_container_uuid", "=", nil]
+ end
crs = ContainerRequest.limit(@limit).order(["created_at desc"]).filter(filters)
@objects = (jobs.to_a + pipelines.to_a + crs.to_a).sort_by(&:created_at).reverse.first(@limit)
if @objects.any?
@next_page_filters = next_page_filters('<=')
@next_page_href = url_for(partial: :all_processes_rows,
- filters: @next_page_filters.to_json)
+ filters: @next_page_filters.to_json,
+ show_children: params[:show_children])
preload_links_for_objects(@objects.to_a)
else
@next_page_href = nil
elsif rc == Workflow
# workflow json
workflow = Workflow.find? template_uuid
- if workflow.workflow
+ if workflow.definition
begin
- wf_json = YAML::load(workflow.workflow)
+ wf_json = ActiveSupport::HashWithIndifferentAccess.new YAML::load(workflow.definition)
rescue => e
- logger.error "Error converting workflow yaml to json: #{e.message}"
- raise ArgumentError, "Error converting workflow yaml to json: #{e.message}"
+ logger.error "Error converting definition yaml to json: #{e.message}"
+ raise ArgumentError, "Error converting definition yaml to json: #{e.message}"
end
end
attrs['state'] = "Uncommitted"
# required
- attrs['command'] = ["arvados-cwl-runner", "--local", "--api=containers", "/var/lib/cwl/workflow.json", "/var/lib/cwl/cwl.input.json"]
+ attrs['command'] = ["arvados-cwl-runner",
+ "--local",
+ "--api=containers",
+ "--project-uuid=#{params['work_unit']['owner_uuid']}",
+ "/var/lib/cwl/workflow.json#main",
+ "/var/lib/cwl/cwl.input.json"]
attrs['container_image'] = "arvados/jobs"
attrs['cwd'] = "/var/spool/cwl"
attrs['output_path'] = "/var/spool/cwl"
+ input_defaults = {}
+ if wf_json
+ inputs = get_cwl_inputs(wf_json)
+ inputs.each do |input|
+ if input[:default]
+ input_defaults[cwl_shortname(input[:id])] = input[:default]
+ end
+ end
+ end
+
# mounts
mounts = {
"/var/lib/cwl/cwl.input.json" => {
"kind" => "json",
- "content" => {}
+ "content" => input_defaults
},
"stdout" => {
"kind" => "file",
render_error status: 422
end
end
+
+ def find_object_by_uuid
+ if params['object_type']
+ @object = params['object_type'].constantize.find(params['uuid'])
+ else
+ super
+ end
+ end
+
+ def show_child_component
+ data = JSON.load(params[:action_data])
+
+ current_obj = {}
+ current_obj_uuid = data['current_obj_uuid']
+ current_obj_name = data['current_obj_name']
+ current_obj_type = data['current_obj_type']
+ current_obj_parent = data['current_obj_parent']
+ if current_obj_uuid
+ resource_class = resource_class_for_uuid current_obj_uuid
+ obj = object_for_dataclass(resource_class, current_obj_uuid)
+ current_obj = obj if obj
+ end
+
+ if current_obj.is_a?(Hash) and !current_obj.any?
+ if current_obj_parent
+ resource_class = resource_class_for_uuid current_obj_parent
+ parent = object_for_dataclass(resource_class, current_obj_parent)
+ parent_wu = parent.work_unit
+ children = parent_wu.children
+ if current_obj_uuid
+ wu = children.select {|c| c.uuid == current_obj_uuid}.first
+ else current_obj_name
+ wu = children.select {|c| c.label.to_s == current_obj_name}.first
+ end
+ end
+ else
+ if current_obj_type == JobWorkUnit.to_s
+ wu = JobWorkUnit.new(current_obj, current_obj_name, current_obj_parent)
+ elsif current_obj_type == PipelineInstanceWorkUnit.to_s
+ wu = PipelineInstanceWorkUnit.new(current_obj, current_obj_name, current_obj_parent)
+ elsif current_obj_type == ContainerWorkUnit.to_s
+ wu = ContainerWorkUnit.new(current_obj, current_obj_name, current_obj_parent)
+ end
+ end
+
+ respond_to do |f|
+ f.html { render(partial: "show_component", locals: {wu: wu}) }
+ end
+ end
end
projects / arvados.git / blobdiff