+ cy.getAll('@mySharedWritableProject', '@mySharedReadonlyProject', '@myProject1')
+ .then(function ([mySharedWritableProject, mySharedReadonlyProject, myProject1]) {
+ cy.createWorkflow(adminUser.token, {
+ name: `TestWorkflow${Math.floor(Math.random() * 999999)}.cwl`,
+ definition: "{\n \"$graph\": [\n {\n \"class\": \"Workflow\",\n \"doc\": \"Reverse the lines in a document, then sort those lines.\",\n \"hints\": [\n {\n \"acrContainerImage\": \"99b0201f4cade456b4c9d343769a3b70+261\",\n \"class\": \"http://arvados.org/cwl#WorkflowRunnerResources\"\n }\n ],\n \"id\": \"#main\",\n \"inputs\": [\n {\n \"default\": null,\n \"doc\": \"The input file to be processed.\",\n \"id\": \"#main/input\",\n \"type\": \"File\"\n },\n {\n \"default\": true,\n \"doc\": \"If true, reverse (decending) sort\",\n \"id\": \"#main/reverse_sort\",\n \"type\": \"boolean\"\n }\n ],\n \"outputs\": [\n {\n \"doc\": \"The output with the lines reversed and sorted.\",\n \"id\": \"#main/output\",\n \"outputSource\": \"#main/sorted/output\",\n \"type\": \"File\"\n }\n ],\n \"steps\": [\n {\n \"id\": \"#main/rev\",\n \"in\": [\n {\n \"id\": \"#main/rev/input\",\n \"source\": \"#main/input\"\n }\n ],\n \"out\": [\n \"#main/rev/output\"\n ],\n \"run\": \"#revtool.cwl\"\n },\n {\n \"id\": \"#main/sorted\",\n \"in\": [\n {\n \"id\": \"#main/sorted/input\",\n \"source\": \"#main/rev/output\"\n },\n {\n \"id\": \"#main/sorted/reverse\",\n \"source\": \"#main/reverse_sort\"\n }\n ],\n \"out\": [\n \"#main/sorted/output\"\n ],\n \"run\": \"#sorttool.cwl\"\n }\n ]\n },\n {\n \"baseCommand\": \"rev\",\n \"class\": \"CommandLineTool\",\n \"doc\": \"Reverse each line using the `rev` command\",\n \"hints\": [\n {\n \"class\": \"ResourceRequirement\",\n \"ramMin\": 8\n }\n ],\n \"id\": \"#revtool.cwl\",\n \"inputs\": [\n {\n \"id\": \"#revtool.cwl/input\",\n \"inputBinding\": {},\n \"type\": \"File\"\n }\n ],\n \"outputs\": [\n {\n \"id\": \"#revtool.cwl/output\",\n \"outputBinding\": {\n \"glob\": \"output.txt\"\n },\n \"type\": \"File\"\n }\n ],\n \"stdout\": \"output.txt\"\n },\n {\n \"baseCommand\": \"sort\",\n \"class\": \"CommandLineTool\",\n \"doc\": \"Sort lines using the `sort` command\",\n \"hints\": [\n {\n \"class\": \"ResourceRequirement\",\n \"ramMin\": 8\n }\n ],\n \"id\": \"#sorttool.cwl\",\n \"inputs\": [\n {\n \"id\": \"#sorttool.cwl/reverse\",\n \"inputBinding\": {\n \"position\": 1,\n \"prefix\": \"-r\"\n },\n \"type\": \"boolean\"\n },\n {\n \"id\": \"#sorttool.cwl/input\",\n \"inputBinding\": {\n \"position\": 2\n },\n \"type\": \"File\"\n }\n ],\n \"outputs\": [\n {\n \"id\": \"#sorttool.cwl/output\",\n \"outputBinding\": {\n \"glob\": \"output.txt\"\n },\n \"type\": \"File\"\n }\n ],\n \"stdout\": \"output.txt\"\n }\n ],\n \"cwlVersion\": \"v1.0\"\n}",
+ owner_uuid: myProject1.uuid,
+ })
+ .as('testWorkflow');
+
+ cy.createWorkflow(adminUser.token, {
+ name: `TestWorkflow2-${Math.floor(Math.random() * 999999)}.cwl`,
+ definition: "{ \"$graph\": [ { \"$namespaces\": { \"arv\": \"http://arvados.org/cwl#\" }, \"class\": \"Workflow\", \"doc\": \"Detect blurriness of WSI data.\", \"id\": \"#main\", \"inputs\": [ { \"default\": { \"basename\": \"3d3cb547725e72ddb442bc620adbc342+2463\", \"class\": \"Directory\", \"location\": \"keep:3d3cb547725e72ddb442bc620adbc342+2463\" }, \"doc\": \"Collection containing all pipeline input images\", \"id\": \"#main/image_collection\", \"type\": \"Directory\" } ], \"outputs\": [ { \"id\": \"#main/blur_report\", \"outputSource\": \"#main/blurdetection/report\", \"type\": \"Any\" } ], \"steps\": [ { \"id\": \"#main/blurdetection\", \"in\": [ { \"id\": \"#main/blurdetection/image_collection\", \"source\": \"#main/image_collection\" } ], \"out\": [ \"#main/blurdetection/report\" ], \"run\": \"#blurdetection.cwl\" } ] }, { \"arguments\": [ \"--num_workers\", \"0\", \"--wsi_dir\", \"$(inputs.image_collection)\", \"--tile_out_dir\", \"$(runtime.outdir)\" ], \"baseCommand\": [ \"python3\", \"/updated_blur_on_folder.py\" ], \"class\": \"CommandLineTool\", \"hints\": [ { \"class\": \"DockerRequirement\", \"dockerPull\": \"updated_score_aws:cpu2\", \"http://arvados.org/cwl#dockerCollectionPDH\": \"0d6702518d1408ce2c471ffec40695cf+4924\" }, { \"class\": \"ResourceRequirement\", \"coresMin\": 8, \"ramMin\": 20000 }, { \"class\": \"http://arvados.org/cwl#RuntimeConstraints\", \"keep_cache\": 2000 } ], \"id\": \"#blurdetection.cwl\", \"inputs\": [ { \"doc\": \"Collection containing all pipeline input images\", \"id\": \"#blurdetection.cwl/image_collection\", \"type\": \"Directory\" } ], \"outputs\": [ { \"id\": \"#blurdetection.cwl/report\", \"outputBinding\": { \"glob\": \"*.csv\" }, \"type\": \"Any\" } ] } ], \"cwlVersion\": \"v1.0\" }",
+ owner_uuid: myProject1.uuid,
+ })
+ .as('testWorkflow2');
+
+ cy.loginAs(activeUser);
+
+ cy.get('main').contains(myProject1.name).click();
+
+ cy.get('[data-cy=side-panel-button]').click();
+
+ cy.get('#aside-menu-list').contains('Run a workflow').click();
+
+ cy.get('@testWorkflow')
+ .then((testWorkflow) => {
+ cy.get('main').contains(testWorkflow.name).click();
+ cy.get('[data-cy=run-process-next-button]').click();
+ cy.get('[data-cy=new-process-panel]')
+ .within(() => {
+ cy.contains('input').next().click();
+ });
+ cy.get('[data-cy=choose-a-file-dialog]').as('chooseFileDialog');
+ cy.get('[data-cy=projects-tree-favourites-tree-picker]').contains('Favorites').closest('ul').find('i').click();
+ cy.get('@chooseFileDialog').find(`[data-id=${mySharedWritableProject.uuid}]`);
+ cy.get('@chooseFileDialog').find(`[data-id=${mySharedReadonlyProject.uuid}]`);
+ cy.get('button').contains('Cancel').click();
+ });
+
+ cy.get('button').contains('Back').click();
+
+ cy.get('@testWorkflow2')
+ .then((testWorkflow2) => {
+ cy.get('main').contains(testWorkflow2.name).click();
+ cy.get('button').contains('Change Workflow').click();
+ cy.get('[data-cy=run-process-next-button]').click();
+ cy.get('[data-cy=new-process-panel]')
+ .within(() => {
+ cy.contains('image_collection').next().click();
+ });
+ cy.get('[data-cy=choose-a-directory-dialog]').as('chooseDirectoryDialog');
+ cy.get('[data-cy=projects-tree-favourites-tree-picker]').contains('Favorites').closest('ul').find('i').click();
+ cy.get('@chooseDirectoryDialog').find(`[data-id=${mySharedWritableProject.uuid}]`);
+ cy.get('@chooseDirectoryDialog').find(`[data-id=${mySharedReadonlyProject.uuid}]`);
+ });