-import gflags
-import httplib
-import httplib2
import logging
import os
-import pprint
-import sys
-import types
-import subprocess
-import json
-import UserDict
import re
-import hashlib
-import string
-import bz2
-import zlib
-import fcntl
-import time
-import threading
from collections import deque
from stat import *
+from .arvfile import ArvadosFileBase
from keep import *
-from stream import *
+from .stream import StreamReader, split
import config
import errors
import util
class CollectionBase(object):
def __enter__(self):
- pass
+ return self
- def __exit__(self):
+ def __exit__(self, exc_type, exc_value, traceback):
pass
def _my_keep(self):
streams = {}
for s in self.all_streams():
for f in s.all_files():
- filestream = s.name() + "/" + f.name()
- r = filestream.rindex("/")
- streamname = filestream[:r]
- filename = filestream[r+1:]
+ streamname, filename = split(s.name() + "/" + f.name())
if streamname not in streams:
streams[streamname] = {}
if filename not in streams[streamname]:
[StreamReader(stream, keep=self._my_keep()).manifest_text()
for stream in self._streams])
+ def open(self, streampath, filename=None):
+ """open(streampath[, filename]) -> file-like object
+
+ Pass in the path of a file to read from the Collection, either as a
+ single string or as two separate stream name and file name arguments.
+ This method returns a file-like object to read that file.
+ """
+ self._populate()
+ if filename is None:
+ streampath, filename = split(streampath)
+ keep_client = self._my_keep()
+ for stream_s in self._streams:
+ stream = StreamReader(stream_s, keep_client,
+ num_retries=self.num_retries)
+ if stream.name() == streampath:
+ break
+ else:
+ raise ValueError("stream '{}' not found in Collection".
+ format(streampath))
+ try:
+ return stream.files()[filename]
+ except KeyError:
+ raise ValueError("file '{}' not found in Collection stream '{}'".
+ format(filename, streampath))
+
def all_streams(self):
self._populate()
return [StreamReader(s, self._my_keep(), num_retries=self.num_retries)
return self._manifest_text
+class _WriterFile(ArvadosFileBase):
+ def __init__(self, coll_writer, name):
+ super(_WriterFile, self).__init__(name, 'wb')
+ self.dest = coll_writer
+
+ def close(self):
+ super(_WriterFile, self).close()
+ self.dest.finish_current_file()
+
+ @ArvadosFileBase._before_close
+ def write(self, data):
+ self.dest.write(data)
+
+ @ArvadosFileBase._before_close
+ def writelines(self, seq):
+ for data in seq:
+ self.write(data)
+
+ @ArvadosFileBase._before_close
+ def flush(self):
+ self.dest.flush_data()
+
+
class CollectionWriter(CollectionBase):
KEEP_BLOCK_SIZE = 2**26
self._queued_file = None
self._queued_dirents = deque()
self._queued_trees = deque()
+ self._last_open = None
- def __exit__(self):
- self.finish()
+ def __exit__(self, exc_type, exc_value, traceback):
+ if exc_type is None:
+ self.finish()
def do_queued_work(self):
# The work queue consists of three pieces:
while self._data_buffer_len >= self.KEEP_BLOCK_SIZE:
self.flush_data()
+ def open(self, streampath, filename=None):
+ """open(streampath[, filename]) -> file-like object
+
+ Pass in the path of a file to write to the Collection, either as a
+ single string or as two separate stream name and file name arguments.
+ This method returns a file-like object you can write to add it to the
+ Collection.
+
+ You may only have one file object from the Collection open at a time,
+ so be sure to close the object when you're done. Using the object in
+ a with statement makes that easy::
+
+ with cwriter.open('./doc/page1.txt') as outfile:
+ outfile.write(page1_data)
+ with cwriter.open('./doc/page2.txt') as outfile:
+ outfile.write(page2_data)
+ """
+ if filename is None:
+ streampath, filename = split(streampath)
+ if self._last_open and not self._last_open.closed:
+ raise errors.AssertionError(
+ "can't open '{}' when '{}' is still open".format(
+ filename, self._last_open.name))
+ if streampath != self.current_stream_name():
+ self.start_new_stream(streampath)
+ self.set_current_file_name(filename)
+ self._last_open = _WriterFile(self, filename)
+ return self._last_open
+
def flush_data(self):
data_buffer = ''.join(self._data_buffer)
if data_buffer: