lib/dispatchcloud
lib/dispatchcloud/container
lib/dispatchcloud/scheduler
-lib/dispatchcloud/ssh_executor
+lib/dispatchcloud/sshexecutor
lib/dispatchcloud/worker
lib/mount
lib/pam
clear_temp() {
if [[ -z "$temp" ]]; then
- # we didn't even get as far as making a temp dir
+ # we did not even get as far as making a temp dir
:
elif [[ -z "$temp_preserve" ]]; then
+ # Go creates readonly dirs in the module cache, which cause
+ # "rm -rf" to fail unless we chmod first.
+ chmod -R u+w "$temp"
rm -rf "$temp"
else
echo "Leaving behind temp dirs in $temp"
echo "locale: ${LANG}"
[[ "$(locale charmap)" = "UTF-8" ]] \
|| fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
- echo -n 'virtualenv: '
- virtualenv --version \
- || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
echo -n 'ruby: '
ruby -v \
|| fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
echo -n 'gnutls.h: '
find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
|| fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
- echo -n 'Python2 pyconfig.h: '
- find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
- || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
+ echo -n 'virtualenv: '
+ python3 -m venv -h | egrep --max-count=1 . \
+ || fatal "No virtualenv. Try: apt-get install python3-venv"
echo -n 'Python3 pyconfig.h: '
find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
|| fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
checkhealth() {
svc="$1"
- base=$("${VENVDIR}/bin/python" -c "import yaml; print list(yaml.safe_load(file('$ARVADOS_CONFIG'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0]")
+ base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
url="$base/_health/ping"
if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
echo "${url} failed"
if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
return 0
fi
- . "$VENVDIR/bin/activate"
+ . "$VENV3DIR/bin/activate"
echo 'Starting API, controller, keepproxy, keep-web, arv-git-httpd, ws, and nginx ssl proxy...'
if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
mkdir -p "$WORKSPACE/services/api/log"
fail=1
cd "$WORKSPACE" \
- && eval $(python sdk/python/tests/run_test_server.py start --auth admin) \
+ && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
&& export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
&& export ARVADOS_TEST_API_INSTALLED="$$" \
&& checkpidfile api \
&& checkdiscoverydoc $ARVADOS_API_HOST \
- && eval $(python sdk/python/tests/run_test_server.py start_nginx) \
+ && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
&& checkpidfile nginx \
- && python sdk/python/tests/run_test_server.py start_controller \
+ && python3 sdk/python/tests/run_test_server.py start_controller \
&& checkpidfile controller \
&& checkhealth Controller \
&& checkdiscoverydoc $ARVADOS_API_HOST \
- && python sdk/python/tests/run_test_server.py start_keep_proxy \
+ && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
&& checkpidfile keepproxy \
- && python sdk/python/tests/run_test_server.py start_keep-web \
+ && python3 sdk/python/tests/run_test_server.py start_keep-web \
&& checkpidfile keep-web \
&& checkhealth WebDAV \
- && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
+ && python3 sdk/python/tests/run_test_server.py start_arv-git-httpd \
&& checkpidfile arv-git-httpd \
&& checkhealth GitHTTP \
- && python sdk/python/tests/run_test_server.py start_ws \
+ && python3 sdk/python/tests/run_test_server.py start_ws \
&& checkpidfile ws \
&& export ARVADOS_TEST_PROXY_SERVICES=1 \
&& (env | egrep ^ARVADOS) \
return
fi
unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
- . "$VENVDIR/bin/activate" || return
+ . "$VENV3DIR/bin/activate" || return
cd "$WORKSPACE" \
- && python sdk/python/tests/run_test_server.py stop_nginx \
- && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
- && python sdk/python/tests/run_test_server.py stop_ws \
- && python sdk/python/tests/run_test_server.py stop_keep-web \
- && python sdk/python/tests/run_test_server.py stop_keep_proxy \
- && python sdk/python/tests/run_test_server.py stop_controller \
- && python sdk/python/tests/run_test_server.py stop \
+ && python3 sdk/python/tests/run_test_server.py stop_nginx \
+ && python3 sdk/python/tests/run_test_server.py stop_arv-git-httpd \
+ && python3 sdk/python/tests/run_test_server.py stop_ws \
+ && python3 sdk/python/tests/run_test_server.py stop_keep-web \
+ && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
+ && python3 sdk/python/tests/run_test_server.py stop_controller \
+ && python3 sdk/python/tests/run_test_server.py stop \
&& all_services_stopped=1
deactivate
unset ARVADOS_CONFIG
tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
PATH="$tmpdir_gem_home/bin:$PATH"
- export GEM_PATH="$tmpdir_gem_home"
+ export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
echo "Will install dependencies to $(gem env gemdir)"
- echo "Will install arvados gems to $tmpdir_gem_home"
+ echo "Will install bundler and arvados gems to $tmpdir_gem_home"
echo "Gem search path is GEM_PATH=$GEM_PATH"
- bundle="$(gem env gempath | cut -f1 -d:)/bin/bundle"
+ bundle="$tmpdir_gem_home/bin/bundle"
(
export HOME=$GEMHOME
bundlers="$(gem list --details bundler)"
setup_virtualenv() {
local venvdest="$1"; shift
- if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
- virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
+ if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
+ python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
elif [[ -n "$short" ]]; then
return
fi
- if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
- # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
- "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
- else
- "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
- fi
+ "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
}
initialize() {
fi
# Set up temporary install dirs (unless existing dirs were supplied)
- for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
+ for tmpdir in VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
do
if [[ -z "${!tmpdir}" ]]; then
eval "$tmpdir"="$temp/$tmpdir"
go mod download || fatal "Go deps failed"
which goimports >/dev/null || go get golang.org/x/tools/cmd/goimports || fatal "Go setup failed"
- setup_virtualenv "$VENVDIR" --python python2.7
- . "$VENVDIR/bin/activate"
+ setup_virtualenv "$VENV3DIR"
+ . "$VENV3DIR/bin/activate"
# Needed for run_test_server.py which is used by certain (non-Python) tests.
+ # pdoc3 needed to generate the Python SDK documentation.
(
set -e
- "${VENVDIR}/bin/pip" install PyYAML
- "${VENV3DIR}/bin/pip" install PyYAML
+ "${VENV3DIR}/bin/pip3" install wheel
+ "${VENV3DIR}/bin/pip3" install PyYAML
+ "${VENV3DIR}/bin/pip3" install httplib2
+ "${VENV3DIR}/bin/pip3" install future
+ "${VENV3DIR}/bin/pip3" install google-api-python-client
+ "${VENV3DIR}/bin/pip3" install ciso8601
+ "${VENV3DIR}/bin/pip3" install pycurl
+ "${VENV3DIR}/bin/pip3" install ws4py
+ "${VENV3DIR}/bin/pip3" install pdoc3
cd "$WORKSPACE/sdk/python"
- python setup.py install
+ python3 setup.py install
) || fatal "installing PyYAML and sdk/python failed"
-
- # Deactivate Python 2 virtualenv
- deactivate
-
- # If Python 3 is available, set up its virtualenv in $VENV3DIR.
- # Otherwise, skip dependent tests.
- PYTHON3=$(which python3)
- if [[ ${?} = 0 ]]; then
- setup_virtualenv "$VENV3DIR" --python python3
- else
- PYTHON3=
- cat >&2 <<EOF
-
-Warning: python3 could not be found. Python 3 tests will be skipped.
-
-EOF
- fi
}
retry() {
stop_services
check_arvados_config "$1"
;;
- gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/ssh_executor | lib/dispatchcloud/worker)
+ gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/sshexecutor | lib/dispatchcloud/worker)
check_arvados_config "$1"
# don't care whether services are running
;;
result=
if which deactivate >/dev/null; then deactivate; fi
- if ! . "$VENVDIR/bin/activate"
+ if ! . "$VENV3DIR/bin/activate"
then
result=1
elif [[ "$2" == "go" ]]
# Create config file. The run_test_server script requires PyYAML,
# so virtualenv needs to be active. Downstream steps like
# workbench install which require a valid config.yml.
- if [[ ! -s "$VENVDIR/bin/activate" ]] ; then
+ if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
install_env
fi
- . "$VENVDIR/bin/activate"
+ . "$VENV3DIR/bin/activate"
cd "$WORKSPACE"
- eval $(python sdk/python/tests/run_test_server.py setup_config)
+ eval $(python3 sdk/python/tests/run_test_server.py setup_config)
deactivate
fi
}
result=
if which deactivate >/dev/null; then deactivate; fi
- if [[ "$1" != "env" ]] && ! . "$VENVDIR/bin/activate"; then
+ if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
result=1
elif [[ "$2" == "go" ]]
then
# install" ensures that we've actually installed the local package
# we just built.
cd "$WORKSPACE/$1" \
- && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
+ && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
&& cd "$WORKSPACE" \
- && "${3}pip" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
- && "${3}pip" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
+ && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
+ && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
elif [[ "$2" != "" ]]
then
"install_$2"
# database, so that we can drop it. This assumes the current user
# is a postgresql superuser.
cd "$WORKSPACE/services/api" \
- && test_database=$("${VENVDIR}/bin/python" -c "import yaml; print yaml.safe_load(file('$ARVADOS_CONFIG'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname']") \
+ && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
&& psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
mkdir -p "$WORKSPACE/services/api/tmp/pids"
if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
(
dir="$WORKSPACE/services/api/tmp"
- set -ex
+ set -e
openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
) || return 1
|| return 1
(
- set -e
+ set -ex
cd "$WORKSPACE/services/api"
export RAILS_ENV=test
if "$bundle" exec rails db:environment:set ; then
declare -a pythonstuff
pythonstuff=(
- sdk/python
sdk/python:py3
sdk/cwl:py3
services/dockercleaner:py3
- services/fuse
services/fuse:py3
- tools/crunchstat-summary
tools/crunchstat-summary:py3
)
(
set -e
cd "$WORKSPACE/doc"
- ARVADOS_API_HOST=qr1hi.arvadosapi.com
+ ARVADOS_API_HOST=pirca.arvadosapi.com
# Make sure python-epydoc is installed or the next line won't
# do much good!
PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
do_install cmd/arvados-server go
do_install sdk/cli
do_install sdk/perl
- do_install sdk/python pip
do_install sdk/python pip "${VENV3DIR}/bin/"
do_install sdk/ruby
do_install services/api
do_install services/login-sync
for p in "${pythonstuff[@]}"
do
- dir=${p%:py3}
- if [[ ${dir} = ${p} ]]; then
- if [[ -z ${skip[python2]} ]]; then
- do_install ${dir} pip
- fi
- elif [[ -n ${PYTHON3} ]]; then
- if [[ -z ${skip[python3]} ]]; then
- do_install ${dir} pip "$VENV3DIR/bin/"
- fi
- fi
+ dir=${p%:py3}
+ if [[ -z ${skip[python3]} ]]; then
+ do_install ${dir} pip "$VENV3DIR/bin/"
+ fi
done
for g in "${gostuff[@]}"
do
for p in "${pythonstuff[@]}"
do
dir=${p%:py3}
- if [[ ${dir} = ${p} ]]; then
- if [[ -z ${skip[python2]} ]]; then
- do_test ${dir} pip
- fi
- elif [[ -n ${PYTHON3} ]]; then
- if [[ -z ${skip[python3]} ]]; then
- do_test ${dir} pip "$VENV3DIR/bin/"
- fi
+ if [[ -z ${skip[python3]} ]]; then
+ do_test ${dir} pip "$VENV3DIR/bin/"
fi
done
done
for p in "${pythonstuff[@]}"; do
dir=${p%:py3}
- testfuncargs[$dir]="$dir pip $VENVDIR/bin/"
testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
done
skip=()
only=()
only_install=()
- if [[ -e "$VENVDIR/bin/activate" ]]; then stop_services; fi
+ if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
setnextcmd() {
if [[ "$TERM" = dumb ]]; then
# assume emacs, or something, is offering a history buffer
# and pre-populating the command will only cause trouble
nextcmd=
- elif [[ ! -e "$VENVDIR/bin/activate" ]]; then
+ elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
nextcmd="install deps"
else
nextcmd=""
projects / arvados.git / blobdiff