19070: Add integration test for copying dependencies

[arvados.git] / sdk / cwl / arvados_cwl / arvcontainer.py

diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index b04fb190e963e965524679bb4473767820e8b849..33b4c90c617711f6c2505bda1be35e93ed74137f 100644 (file)
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -247,7 +247,8 @@ class ArvadosContainer(JobBase):
                                                                     runtimeContext.project_uuid,
                                                                     runtimeContext.force_docker_pull,
                                                                     runtimeContext.tmp_outdir_prefix,
-                                                                    runtimeContext.match_local_docker)
+                                                                    runtimeContext.match_local_docker,
+                                                                    runtimeContext.copy_deps)
 
         network_req, _ = self.get_requirement("NetworkAccess")
         if network_req:
@@ -394,7 +395,7 @@ class ArvadosContainer(JobBase):
                     processStatus = "permanentFail"
 
                 if rcode == 137:
-                    logger.warning("%s This container was killed on the compute instance.  The most common reason is that it attempted to allocate too much RAM and was targeted by the Out Of Memory (OOM) killer.  Try resubmitting with a higher 'ramMin'.",
+                    logger.warning("%s Container may have been killed for using too much RAM.  Try resubmitting with a higher 'ramMin'.",
                                  self.arvrunner.label(self))
             else:
                 processStatus = "permanentFail"