layout: default
navsection: api
navmenu: Concepts
-title: Request syntax
+title: REST API syntax
...
+{% comment %}
+Copyright (C) The Arvados Authors. All rights reserved.
-API requests to Arvados are made using standard HTTP requests.
+SPDX-License-Identifier: CC-BY-SA-3.0
+{% endcomment %}
+
+Arvados exposes a REST API using standard HTTP requests.
h3. HTTP Method
h3. Request URI
-The URI portion of the request identifies the specific resource to operate on.
+The URI portion of the request identifies the specific resource to operate on. For example, operations on "collections":{{site.baseurl}}/api/methods/collections.html use the @https://{{ site.arvados_api_host }}/arvados/v1/collections@ request URI prefix.
h3. Authorization header
-Every request must include an API token. This identifies the user making the request for the purposes of access control. In addition, tokens may be further "restricted in scope":/api/methods/api_client_authorizations.html#scope to only access certain API endpoints.
+Every request must include an API token. This identifies the user making the request for the purposes of access control. In addition, tokens may be further "restricted in scope":{{site.baseurl}}/api/methods/api_client_authorizations.html#scope to only access certain API endpoints.
API requests must provide the API token using the @Authorization@ header in the following format:
<pre>
-Authorization: OAuth2 xxxxapitokenxxxx
+$ curl -v -H "Authorization: Bearer xxxxapitokenxxxx" https://192.168.5.2:8000/arvados/v1/collections
+> GET /arvados/v1/collections HTTP/1.1
+> ...
+> Authorization: Bearer xxxxapitokenxxxx
+> ...
+</pre>
+
+On a cluster configured to use an OpenID Connect provider (other than Google) as a login backend, Arvados can be configured to accept an OpenID Connect access token in place of an Arvados API token. OIDC access tokens are also accepted by a cluster that delegates login to another cluster (LoginCluster) which in turn has this feature configured. See @Login.OpenIDConnect.AcceptAccessTokenScope@ in the "default config.yml file":{{site.baseurl}}/admin/config.html for details.
+
+<pre>
+$ curl -v -H "Authorization: Bearer xxxx-openid-connect-access-token-xxxx" https://192.168.5.2:8000/arvados/v1/collections
</pre>
h3. Parameters
Request parameters may be provided in one of two ways. They may be provided in the "query" section of request URI, or they may be provided in the body of the request with application/x-www-form-urlencoded encoding. If parameters are provided in both places, their values will be merged. Parameter names must be unique. If a parameter appears multiple times, the behavior is undefined.
-To support structured and nested parameter values, after urldecode the value of each parameter is parsed as JSON. Because of this, string values must be surrounded in double quotes.
+Structured and nested parameter values must be provided as urlencoded JSON.
h3. Result
Results are returned JSON-encoded in the response body.
-h3. Errors
+h3(#errors). Errors
If a request cannot be fulfilled, the API will return 4xx or 5xx HTTP status code. Be aware that the API server may return a 404 (Not Found) status for resources that exist but for which the client does not have read access. The API will also return an error record:
h2. Examples
-h3. Get a specific record
+h3. Create a new record
<pre>
-$ curl -v -H "Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km | jq .
-> GET /arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km HTTP/1.1
+$ curl -v -X POST --data-urlencode 'collection={"name":"empty collection"}' -H "Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections | jq .
+> POST /arvados/v1/collections HTTP/1.1
> User-Agent: curl/7.38.0
> Host: 192.168.5.2:8000
> Accept: */*
-> Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
+> Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
+> Content-Length: 54
+> Content-Type: application/x-www-form-urlencoded
>
+} [data not shown]
< HTTP/1.1 200 OK
< Content-Type: application/json; charset=utf-8
< Transfer-Encoding: chunked
< Access-Control-Allow-Headers: Authorization
< Access-Control-Max-Age: 86486400
< X-UA-Compatible: IE=Edge,chrome=1
-< ETag: "fec2ddf433a352e5a2b5d356abd6d3d4"
+< ETag: "2ec9ef5151c1f7a1486ad169c33ae462"
< Cache-Control: max-age=0, private, must-revalidate
-< X-Request-Id: 40b447507ff202ae9a0b0b3e0ebe98da
-< X-Runtime: 0.011404
+< Set-Cookie: _server_session=BAh7BkkiD3Nlc3Npb25faWQGOgZFVEkiJTIwMjQ1NTE5YmEwMzU1MGZkMTBmYmY1YzllY2ZiMjFlBjsAVA%3D%3D--653bc9c20899d48ee8523e18d9a4c1cde0702577; path=/; HttpOnly
+< X-Request-Id: 56aa10bc49097f3b44d3ed946bf0e61e
+< X-Runtime: 0.049951
< X-Powered-By: Phusion Passenger 4.0.41
-< Date: Fri, 28 Oct 2016 18:59:09 GMT
+< Date: Fri, 28 Oct 2016 19:20:09 GMT
< Server: nginx/1.4.7 + Phusion Passenger 4.0.41
<
{
- "href": "/collections/962eh-4zz18-xi32mpz2621o8km",
+ "href": "/collections/962eh-4zz18-m1ma0mxxfg3mbcc",
"kind": "arvados#collection",
- "etag": "3mmn0s9e1z5s5opfofmtb9k8p",
- "uuid": "962eh-4zz18-xi32mpz2621o8km",
+ "etag": "c5ifrv1ox2tu6alb559ymtkb7",
+ "uuid": "962eh-4zz18-m1ma0mxxfg3mbcc",
"owner_uuid": "962eh-tpzed-000000000000000",
- "created_at": "2016-10-27T14:47:43.792587000Z",
+ "created_at": "2016-10-28T19:20:09.320771531Z",
"modified_by_client_uuid": "962eh-ozdt8-lm5x8emraox8epg",
"modified_by_user_uuid": "962eh-tpzed-000000000000000",
- "modified_at": "2016-10-27T14:47:43.792166000Z",
- "name": "Saved at 2016-10-27 14:47:43 UTC by peter@debian",
+ "modified_at": "2016-10-28T19:20:09.319661000Z",
+ "name": "empty collection",
"description": null,
"properties": {},
- "portable_data_hash": "93a45073511646a5c3e2f4953fcf6f61+116",
- "manifest_text": ". eff999f3b5158331eb44a9a93e3b36e1+67108864+Aad3839bea88bce22cbfe71cf4943de7dab3ea52a@5826180f db141bfd11f7da60dce9e5ee85a988b8+34038725+Ae8f48913fed782cbe463e0499ab37697ee06a2f8@5826180f 0:101147589:rna.SRR948778.bam\n",
+ "portable_data_hash": "d41d8cd98f00b204e9800998ecf8427e+0",
+ "manifest_text": "",
"replication_desired": null,
"replication_confirmed": null,
"replication_confirmed_at": null,
}
</pre>
-h3. List records and filter by uuid
+h3. Delete a record
<pre>
-$ curl -v -G --data-urlencode 'filters=[["uuid", "=", "962eh-4zz18-xi32mpz2621o8km"]]' -H "Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections | jq .
-> GET /arvados/v1/collections?filters=%5B%5B%22uuid%22%2C%20%22%3D%22%2C%20%22962eh-4zz18-xi32mpz2621o8km%22%5D%5D HTTP/1.1
+$ curl -X DELETE -v -H "Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections/962eh-4zz18-m1ma0mxxfg3mbcc | jq .
+> DELETE /arvados/v1/collections/962eh-4zz18-m1ma0mxxfg3mbcc HTTP/1.1
> User-Agent: curl/7.38.0
> Host: 192.168.5.2:8000
> Accept: */*
-> Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
+> Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
>
< HTTP/1.1 200 OK
< Content-Type: application/json; charset=utf-8
< Access-Control-Allow-Headers: Authorization
< Access-Control-Max-Age: 86486400
< X-UA-Compatible: IE=Edge,chrome=1
-< ETag: "76345ef24952f073acc3a0c550241d4e"
+< ETag: "1e8f72802cf1a6d0a5c4a1ebbfcc46a9"
< Cache-Control: max-age=0, private, must-revalidate
-< X-Request-Id: d34b8ede4ffc707d8ed172dc2f47ff5e
-< X-Runtime: 0.012727
+< Set-Cookie: _server_session=BAh7BkkiD3Nlc3Npb25faWQGOgZFVEkiJTc2NDYyY2M0NTNlNmU3M2Y2M2E3YmFiMWQ1MTEyZGZkBjsAVA%3D%3D--d28c7dd640bd24e2b12f01e77088072138dcf145; path=/; HttpOnly
+< X-Request-Id: e66fd3ab825bdb87301f5456161fb641
+< X-Runtime: 0.028788
< X-Powered-By: Phusion Passenger 4.0.41
-< Date: Fri, 28 Oct 2016 19:08:52 GMT
+< Date: Fri, 28 Oct 2016 19:33:31 GMT
< Server: nginx/1.4.7 + Phusion Passenger 4.0.41
<
{
- "kind": "arvados#collectionList",
- "etag": "",
- "self_link": "",
- "offset": 0,
- "limit": 100,
- "items": [
- {
- "href": "/collections/962eh-4zz18-xi32mpz2621o8km",
- "kind": "arvados#collection",
- "etag": "78tpra4ms5o67mngyd0dr4n9e",
- "uuid": "962eh-4zz18-xi32mpz2621o8km",
- "owner_uuid": "962eh-tpzed-000000000000000",
- "created_at": "2016-10-27T14:47:43.792587000Z",
- "modified_by_client_uuid": "962eh-ozdt8-lm5x8emraox8epg",
- "modified_by_user_uuid": "962eh-tpzed-000000000000000",
- "modified_at": "2016-10-27T14:47:43.792166000Z",
- "name": "Saved at 2016-10-27 14:47:43 UTC by peter@debian",
- "description": null,
- "properties": {},
- "portable_data_hash": "93a45073511646a5c3e2f4953fcf6f61+116",
- "replication_desired": null,
- "replication_confirmed": null,
- "replication_confirmed_at": null,
- "expires_at": null
- }
- ],
- "items_available": 1
+ "href": "/collections/962eh-4zz18-m1ma0mxxfg3mbcc",
+ "kind": "arvados#collection",
+ "etag": "c5ifrv1ox2tu6alb559ymtkb7",
+ "uuid": "962eh-4zz18-m1ma0mxxfg3mbcc",
+ "owner_uuid": "962eh-tpzed-000000000000000",
+ "created_at": "2016-10-28T19:20:09.320771000Z",
+ "modified_by_client_uuid": "962eh-ozdt8-lm5x8emraox8epg",
+ "modified_by_user_uuid": "962eh-tpzed-000000000000000",
+ "modified_at": "2016-10-28T19:20:09.319661000Z",
+ "name": "empty collection",
+ "description": null,
+ "properties": {},
+ "portable_data_hash": "d41d8cd98f00b204e9800998ecf8427e+0",
+ "manifest_text": "",
+ "replication_desired": null,
+ "replication_confirmed": null,
+ "replication_confirmed_at": null,
+ "expires_at": null
}
</pre>
-h3. Update a field
+h3. Get a specific record
<pre>
-$ curl -v -X PUT --data-urlencode 'collection={"name":"rna.SRR948778.bam"}' -H "Authorization: OAuth2 $ARVADOS_API_TOKEN" https://$ARVADOS_API_HOST/arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km | jq .
-> PUT /arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km HTTP/1.1
+$ curl -v -H "Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km | jq .
+> GET /arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km HTTP/1.1
> User-Agent: curl/7.38.0
> Host: 192.168.5.2:8000
> Accept: */*
-> Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
-> Content-Length: 53
-> Content-Type: application/x-www-form-urlencoded
+> Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
>
-} [data not shown]
< HTTP/1.1 200 OK
< Content-Type: application/json; charset=utf-8
< Transfer-Encoding: chunked
< Access-Control-Allow-Headers: Authorization
< Access-Control-Max-Age: 86486400
< X-UA-Compatible: IE=Edge,chrome=1
-< ETag: "fbb50d2847426eab793e3fcf346ca9eb"
+< ETag: "fec2ddf433a352e5a2b5d356abd6d3d4"
< Cache-Control: max-age=0, private, must-revalidate
-< Set-Cookie: _server_session=BAh7BkkiD3Nlc3Npb25faWQGOgZFVEkiJWI3NjFjMzVjMGI5OGExYmNjZDg0ZTg5MjZhMzcwMDE1BjsAVA%3D%3D--0e005d71fad15cb366e47361c38474b7447ba155; path=/; HttpOnly
-< X-Request-Id: 76d3cb3c0995af6133b0a73a64f57354
-< X-Runtime: 0.030756
+< X-Request-Id: 40b447507ff202ae9a0b0b3e0ebe98da
+< X-Runtime: 0.011404
< X-Powered-By: Phusion Passenger 4.0.41
-< Date: Fri, 28 Oct 2016 19:15:16 GMT
+< Date: Fri, 28 Oct 2016 18:59:09 GMT
< Server: nginx/1.4.7 + Phusion Passenger 4.0.41
<
{
"href": "/collections/962eh-4zz18-xi32mpz2621o8km",
"kind": "arvados#collection",
- "etag": "51509hhxo9qqjxqewnoz1b7og",
+ "etag": "3mmn0s9e1z5s5opfofmtb9k8p",
"uuid": "962eh-4zz18-xi32mpz2621o8km",
"owner_uuid": "962eh-tpzed-000000000000000",
"created_at": "2016-10-27T14:47:43.792587000Z",
"modified_by_client_uuid": "962eh-ozdt8-lm5x8emraox8epg",
"modified_by_user_uuid": "962eh-tpzed-000000000000000",
- "modified_at": "2016-10-28T19:15:16.137814000Z",
- "name": "rna.SRR948778.bam",
+ "modified_at": "2016-10-27T14:47:43.792166000Z",
+ "name": "Saved at 2016-10-27 14:47:43 UTC by peter@debian",
"description": null,
"properties": {},
"portable_data_hash": "93a45073511646a5c3e2f4953fcf6f61+116",
- "manifest_text": ". eff999f3b5158331eb44a9a93e3b36e1+67108864+Acca57af82cc18c5dfa47bdfd16e335fccd09dfa5@582618c4 db141bfd11f7da60dce9e5ee85a988b8+34038725+A7764f122f41f92c2d5bde1852fcdd1bea5f8bd78@582618c4 0:101147589:rna.SRR948778.bam\n",
+ "manifest_text": ". eff999f3b5158331eb44a9a93e3b36e1+67108864+Aad3839bea88bce22cbfe71cf4943de7dab3ea52a@5826180f db141bfd11f7da60dce9e5ee85a988b8+34038725+Ae8f48913fed782cbe463e0499ab37697ee06a2f8@5826180f 0:101147589:rna.SRR948778.bam\n",
"replication_desired": null,
"replication_confirmed": null,
"replication_confirmed_at": null,
}
</pre>
-h3. Create a new record
+h3. List records and filter by date
+
+(Note, return result is truncated).
<pre>
-$ curl -v -X POST --data-urlencode 'collection={"name":"empty collection"}' -H "Authorization: OAuth2 $ARVADOS_API_TOKEN" https://$ARVADOS_API_HOST/arvados/v1/collections | jq .
-> POST /arvados/v1/collections HTTP/1.1
+$ curl -v -G --data-urlencode 'filters=[["created_at",">","2016-11-08T21:38:24.124834000Z"]]' -H "Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections | jq .
+> GET /arvados/v1/collections?filters=%5B%5B%22uuid%22%2C%20%22%3D%22%2C%20%22962eh-4zz18-xi32mpz2621o8km%22%5D%5D HTTP/1.1
> User-Agent: curl/7.38.0
> Host: 192.168.5.2:8000
> Accept: */*
-> Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
-> Content-Length: 54
-> Content-Type: application/x-www-form-urlencoded
+> Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
>
-} [data not shown]
< HTTP/1.1 200 OK
< Content-Type: application/json; charset=utf-8
< Transfer-Encoding: chunked
< Access-Control-Allow-Headers: Authorization
< Access-Control-Max-Age: 86486400
< X-UA-Compatible: IE=Edge,chrome=1
-< ETag: "2ec9ef5151c1f7a1486ad169c33ae462"
+< ETag: "76345ef24952f073acc3a0c550241d4e"
< Cache-Control: max-age=0, private, must-revalidate
-< Set-Cookie: _server_session=BAh7BkkiD3Nlc3Npb25faWQGOgZFVEkiJTIwMjQ1NTE5YmEwMzU1MGZkMTBmYmY1YzllY2ZiMjFlBjsAVA%3D%3D--653bc9c20899d48ee8523e18d9a4c1cde0702577; path=/; HttpOnly
-< X-Request-Id: 56aa10bc49097f3b44d3ed946bf0e61e
-< X-Runtime: 0.049951
+< X-Request-Id: d34b8ede4ffc707d8ed172dc2f47ff5e
+< X-Runtime: 0.012727
< X-Powered-By: Phusion Passenger 4.0.41
-< Date: Fri, 28 Oct 2016 19:20:09 GMT
+< Date: Fri, 28 Oct 2016 19:08:52 GMT
< Server: nginx/1.4.7 + Phusion Passenger 4.0.41
<
{
- "href": "/collections/962eh-4zz18-m1ma0mxxfg3mbcc",
- "kind": "arvados#collection",
- "etag": "c5ifrv1ox2tu6alb559ymtkb7",
- "uuid": "962eh-4zz18-m1ma0mxxfg3mbcc",
- "owner_uuid": "962eh-tpzed-000000000000000",
- "created_at": "2016-10-28T19:20:09.320771531Z",
- "modified_by_client_uuid": "962eh-ozdt8-lm5x8emraox8epg",
- "modified_by_user_uuid": "962eh-tpzed-000000000000000",
- "modified_at": "2016-10-28T19:20:09.319661000Z",
- "name": "empty collection",
- "description": null,
- "properties": {},
- "portable_data_hash": "d41d8cd98f00b204e9800998ecf8427e+0",
- "manifest_text": "",
- "replication_desired": null,
- "replication_confirmed": null,
- "replication_confirmed_at": null,
- "expires_at": null
+ "kind": "arvados#collectionList",
+ "etag": "",
+ "self_link": "",
+ "offset": 0,
+ "limit": 100,
+ "items": [
+ {
+ "href": "/collections/962eh-4zz18-ybggo9im899vv60",
+ "kind": "arvados#collection",
+ "etag": "bvgrrsg63zsenb9wnpnp0nsgl",
+ "uuid": "962eh-4zz18-ybggo9im899vv60",
+ "owner_uuid": "962eh-tpzed-000000000000000",
+ "created_at": "2016-11-08T21:47:36.937106000Z",
+ "modified_by_client_uuid": null,
+ "modified_by_user_uuid": "962eh-tpzed-000000000000000",
+ "modified_at": "2016-11-08T21:47:36.936625000Z",
+ "name": "Log from cwl-runner job 962eh-8i9sb-45jww0k15fi5ldd",
+ "description": null,
+ "properties": {},
+ "portable_data_hash": "a7820b94717eff86229927565fedbd72+85",
+ "replication_desired": null,
+ "replication_confirmed": null,
+ "replication_confirmed_at": null,
+ "expires_at": null
+ },
+ ...
+ {
+ "href": "/collections/962eh-4zz18-37i1tfl5de5ild9",
+ "kind": "arvados#collection",
+ "etag": "2fa07dx52lux8wa1loehwyrc5",
+ "uuid": "962eh-4zz18-37i1tfl5de5ild9",
+ "owner_uuid": "962eh-tpzed-000000000000000",
+ "created_at": "2016-11-08T21:38:46.717798000Z",
+ "modified_by_client_uuid": null,
+ "modified_by_user_uuid": "962eh-tpzed-000000000000000",
+ "modified_at": "2016-11-08T21:38:46.717409000Z",
+ "name": null,
+ "description": null,
+ "properties": {},
+ "portable_data_hash": "9d43d4c8328640446f6e252cda584e7e+54",
+ "replication_desired": null,
+ "replication_confirmed": null,
+ "replication_confirmed_at": null,
+ "expires_at": null
+ }
+ ],
+ "items_available": 99
}
</pre>
-h3. Delete a record
+h3. Update a field
<pre>
-$ curl -X DELETE -v -H "Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections/962eh-4zz18-m1ma0mxxfg3mbcc | jq .
-> DELETE /arvados/v1/collections/962eh-4zz18-m1ma0mxxfg3mbcc HTTP/1.1
+$ curl -v -X PUT --data-urlencode 'collection={"name":"rna.SRR948778.bam"}' -H "Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr" https://192.168.5.2:8000/arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km | jq .
+> PUT /arvados/v1/collections/962eh-4zz18-xi32mpz2621o8km HTTP/1.1
> User-Agent: curl/7.38.0
> Host: 192.168.5.2:8000
> Accept: */*
-> Authorization: OAuth2 oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
+> Authorization: Bearer oz0os4nyudswvglxhdlnrgnuelxptmj7qu7dpwvyz3g9ocqtr
+> Content-Length: 53
+> Content-Type: application/x-www-form-urlencoded
>
+} [data not shown]
< HTTP/1.1 200 OK
< Content-Type: application/json; charset=utf-8
< Transfer-Encoding: chunked
< Access-Control-Allow-Headers: Authorization
< Access-Control-Max-Age: 86486400
< X-UA-Compatible: IE=Edge,chrome=1
-< ETag: "1e8f72802cf1a6d0a5c4a1ebbfcc46a9"
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projects / arvados.git / blobdiff