12764: Fixes

[arvados.git] / sdk / cwl / arvados_cwl / pathmapper.py

diff --git a/sdk/cwl/arvados_cwl/pathmapper.py b/sdk/cwl/arvados_cwl/pathmapper.py
index 914ccaa5a1049868cfe7f840f6bf7d56e957218c..bb95ba9ee4636ff273cd93455f901a2123a62995 100644 (file)
--- a/sdk/cwl/arvados_cwl/pathmapper.py
+++ b/sdk/cwl/arvados_cwl/pathmapper.py
@@ -230,7 +230,10 @@ class StagingPathMapper(PathMapper):
             tgt = "%s_%i%s" % (basetgt, n, baseext)
         self.targets.add(tgt)
         if obj["class"] == "Directory":
-            self._pathmap[loc] = MapperEnt(loc, tgt, "Directory", staged)
+            if obj.get("writable"):
+                self._pathmap[loc] = MapperEnt(loc, tgt, "WritableDirectory", staged)
+            else:
+                self._pathmap[loc] = MapperEnt(loc, tgt, "Directory", staged)
             if loc.startswith("_:") or self._follow_dirs:
                 self.visitlisting(obj.get("listing", []), tgt, basedir)
         elif obj["class"] == "File":
@@ -239,7 +242,7 @@ class StagingPathMapper(PathMapper):
             if "contents" in obj and loc.startswith("_:"):
                 self._pathmap[loc] = MapperEnt(obj["contents"], tgt, "CreateFile", staged)
             else:
-                if copy:
+                if copy or obj.get("writable"):
                     self._pathmap[loc] = MapperEnt(loc, tgt, "WritableFile", staged)
                 else:
                     self._pathmap[loc] = MapperEnt(loc, tgt, "File", staged)