Merge branch '20432-getting-containers' refs #20432

[arvados.git] / sdk / cwl / arvados_cwl / __init__.py

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 550ecba1c100c95df9fc5358564d6bcd4fe9bacc..fe27b91ab2165754dd94f7a85878328db6126b4d 100644 (file)
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -212,6 +212,10 @@ def arg_parser():  # type: () -> argparse.ArgumentParser
                         action="store_true", default=False,
                         help=argparse.SUPPRESS)
 
+    parser.add_argument("--fast-parser", dest="fast_parser",
+                        action="store_true", default=False,
+                        help=argparse.SUPPRESS)
+
     parser.add_argument("--thread-count", type=int,
                         default=0, help="Number of threads to use for job submit and output collection.")
 
@@ -280,6 +284,8 @@ def add_arv_hints():
         "http://commonwl.org/cwltool#CUDARequirement",
         "http://arvados.org/cwl#UsePreemptible",
         "http://arvados.org/cwl#OutputCollectionProperties",
+        "http://arvados.org/cwl#KeepCacheTypeRequirement",
+        "http://arvados.org/cwl#OutOfMemoryRetry",
     ])
 
 def exit_signal_handler(sigcode, frame):
@@ -328,7 +334,9 @@ def main(args=sys.argv[1:],
         if api_client is None:
             api_client = arvados.safeapi.ThreadSafeApiCache(
                 api_params={"model": OrderedJsonModel(), "timeout": arvargs.http_timeout},
-                keep_params={"num_retries": 4})
+                keep_params={"num_retries": 4},
+                version='v1',
+            )
             keep_client = api_client.keep
             # Make an API object now so errors are reported early.
             api_client.users().current().execute()
@@ -345,6 +353,12 @@ def main(args=sys.argv[1:],
 
     # Note that unless in debug mode, some stack traces related to user
     # workflow errors may be suppressed.
+
+    # Set the logging on most modules INFO (instead of default which is WARNING)
+    logger.setLevel(logging.INFO)
+    logging.getLogger('arvados').setLevel(logging.INFO)
+    logging.getLogger('arvados.keep').setLevel(logging.WARNING)
+
     if arvargs.debug:
         logger.setLevel(logging.DEBUG)
         logging.getLogger('arvados').setLevel(logging.DEBUG)
@@ -374,9 +388,10 @@ def main(args=sys.argv[1:],
         # unit tests.
         stdout = None
 
-    if arvargs.submit and (arvargs.workflow.startswith("arvwf:") or workflow_uuid_pattern.match(arvargs.workflow)):
+    if arvargs.workflow.startswith("arvwf:") or workflow_uuid_pattern.match(arvargs.workflow) or arvargs.workflow.startswith("keep:"):
         executor.loadingContext.do_validate = False
-        executor.fast_submit = True
+        if arvargs.submit:
+            executor.fast_submit = True
 
     return cwltool.main.main(args=arvargs,
                              stdout=stdout,