else
begin
if resource_class.name == 'Collection'
- link_name = collections_for_object(link_uuid).andand.first.andand.friendly_link_name
+ if CollectionsHelper.match(link_uuid)
+ link_name = collection_for_pdh(link_uuid).andand.first.andand.portable_data_hash
+ else
+ link_name = collections_for_object(link_uuid).andand.first.andand.friendly_link_name
+ end
else
link_name = object_for_dataclass(resource_class, link_uuid).andand.friendly_link_name
end
"data-placement" => "bottom",
"data-type" => input_type,
"data-title" => "Edit #{attr.to_s.gsub '_', ' '}",
- "data-name" => attr,
+ "data-name" => htmloptions['selection_name'] || attr,
"data-object-uuid" => object.uuid,
"data-toggle" => "manual",
- "data-value" => attrvalue,
+ "data-value" => htmloptions['data-value'] || attrvalue,
"id" => span_id,
:class => "editable #{is_textile?( object, attr ) ? 'editable-textile' : ''}"
}.merge(htmloptions).merge(ajax_options)
lt
end
+ def get_cwl_inputs(workflow)
+ if workflow[:inputs]
+ return workflow[:inputs]
+ else
+ workflow[:"$graph"].each do |tool|
+ if tool[:id] == "#main"
+ return tool[:inputs]
+ end
+ end
+ end
+ end
+
+ def cwl_shortname(id)
+ if id[0] == "#"
+ id = id[1..-1]
+ end
+ return id.split("/")[-1]
+ end
+
def cwl_input_info(input_schema)
required = !(input_schema[:type].include? "null")
if input_schema[:type].is_a? Array
elsif input_schema[:type].is_a? Hash
primary_type = input_schema[:type]
end
- param_id = input_schema[:id]
+ param_id = cwl_shortname(input_schema[:id])
return required, primary_type, param_id
end
"data-type" => "select",
"data-source" => (opt_empty_selection + [{value: "true", text: "true"}, {value: "false", text: "false"}]).to_json,
"data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
- "data-title" => "Set value for #{input_schema[:id]}",
+ "data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
"data-name" => dn,
"data-pk" => "{id: \"#{object.uuid}\", key: \"#{object.class.to_s.underscore}\"}",
"data-value" => attrvalue.to_s,
"data-type" => "select",
"data-source" => (opt_empty_selection + primary_type[:symbols].map {|i| {:value => i, :text => i} }).to_json,
"data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
- "data-title" => "Set value for #{input_schema[:id]}",
+ "data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
"data-name" => dn,
"data-pk" => "{id: \"#{object.uuid}\", key: \"#{object.class.to_s.underscore}\"}",
"data-value" => attrvalue,
:id => id
}.merge(htmloptions)
elsif primary_type.is_a? String
- if ["float", "double", "int", "long"].include? primary_type
+ if ["int", "long"].include? primary_type
datatype = "number"
else
datatype = "text"
"data-placement" => "bottom",
"data-type" => datatype,
"data-url" => url_for(action: "update", id: object.uuid, controller: object.class.to_s.pluralize.underscore, merge: true),
- "data-title" => "Set value for #{input_schema[:id]}",
+ "data-title" => "Set value for #{cwl_shortname(input_schema[:id])}",
"data-name" => dn,
"data-pk" => "{id: \"#{object.uuid}\", key: \"#{object.class.to_s.underscore}\"}",
"data-value" => attrvalue,
end
end
+ # yields collection id (pdh or uuid), and full file_path
+ def cwl_input_collections(path, &b)
+ case path
+ when ArvadosBase
+ path.class.columns.each do |c|
+ cwl_input_collections(path[c.name.to_sym], &b)
+ end
+ when Hash
+ path.each do |k, v|
+ cwl_input_collections(v, &b)
+ end
+ when Array
+ path.each do |v|
+ cwl_input_collections(v, &b)
+ end
+ when String
+ if m = /[a-f0-9]{32}\+\d+/.match(path)
+ yield m[0], path.split('keep:')[-1]
+ elsif m = /[0-9a-z]{5}-4zz18-[0-9a-z]{15}/.match(path)
+ yield m[0], path.split('keep:')[-1]
+ end
+ end
+ end
+
def render_arvados_object_list_start(list, button_text, button_href,
params={}, *rest, &block)
show_max = params.delete(:show_max) || 3
RESOURCE_CLASS_ICONS = {
"Collection" => "fa-archive",
+ "ContainerRequest" => "fa-gears",
"Group" => "fa-users",
"Human" => "fa-male", # FIXME: Use a more inclusive icon.
"Job" => "fa-gears",
"Trait" => "fa-clipboard",
"User" => "fa-user",
"VirtualMachine" => "fa-terminal",
+ "Workflow" => "fa-gears",
}
DEFAULT_ICON_CLASS = "fa-cube"