+// Copyright (C) The Arvados Authors. All rights reserved.
+//
+// SPDX-License-Identifier: Apache-2.0
+
package keepclient
import (
"errors"
- "io"
"os"
- "git.curoverse.com/arvados.git/sdk/go/manifest"
+ "git.arvados.org/arvados.git/sdk/go/arvados"
+ "git.arvados.org/arvados.git/sdk/go/manifest"
)
// ErrNoManifest indicates the given collection has no manifest
// parameter when retrieving the collection record).
var ErrNoManifest = errors.New("Collection has no manifest")
-// CollectionFileReader returns an io.Reader that reads file content
-// from a collection. The filename must be given relative to the root
-// of the collection, without a leading "./".
-func (kc *KeepClient) CollectionFileReader(collection map[string]interface{}, filename string) (*cfReader, error) {
+// CollectionFileReader returns a Reader that reads content from a single file
+// in the collection. The filename must be relative to the root of the
+// collection. A leading prefix of "/" or "./" in the filename is ignored.
+func (kc *KeepClient) CollectionFileReader(collection map[string]interface{}, filename string) (arvados.File, error) {
mText, ok := collection["manifest_text"].(string)
if !ok {
return nil, ErrNoManifest
}
- m := manifest.Manifest{Text: mText}
- rdrChan := make(chan *cfReader)
- go func() {
- // q is a queue of FileSegments that we have received but
- // haven't yet been able to send to toGet.
- var q []*manifest.FileSegment
- var r *cfReader
- for seg := range m.FileSegmentIterByName(filename) {
- if r == nil {
- // We've just discovered that the
- // requested filename does appear in
- // the manifest, so we can return a
- // real reader (not nil) from
- // CollectionFileReader().
- r = newCFReader(kc)
- rdrChan <- r
- }
- q = append(q, seg)
- r.totalSize += uint64(seg.Len)
- // Send toGet whatever it's ready to receive.
- Q: for len(q) > 0 {
- select {
- case r.toGet <- q[0]:
- q = q[1:]
- default:
- break Q
- }
- }
- }
- if r == nil {
- // File not found
- rdrChan <- nil
- return
- }
- close(r.countDone)
- for _, seg := range q {
- r.toGet <- seg
- }
- close(r.toGet)
- }()
- // Before returning a reader, wait until we know whether the
- // file exists here:
- r := <-rdrChan
- if r == nil {
- return nil, os.ErrNotExist
- }
- return r, nil
-}
-
-type cfReader struct {
- keepClient *KeepClient
- // doGet() reads FileSegments from toGet, gets the data from
- // Keep, and sends byte slices to toRead to be consumed by
- // Read().
- toGet chan *manifest.FileSegment
- toRead chan []byte
- // bytes ready to send next time someone calls Read()
- buf []byte
- // Total size of the file being read. Not safe to read this
- // until countDone is closed.
- totalSize uint64
- countDone chan struct{}
- // First error encountered.
- err error
-}
-
-func (r *cfReader) Read(outbuf []byte) (n int, err error) {
- if r.err != nil {
- return 0, r.err
- }
- for r.buf == nil || len(r.buf) == 0 {
- var ok bool
- r.buf, ok = <-r.toRead
- if r.err != nil {
- return 0, r.err
- } else if !ok {
- return 0, io.EOF
- }
- }
- if len(r.buf) > len(outbuf) {
- n = len(outbuf)
- } else {
- n = len(r.buf)
+ fs, err := (&arvados.Collection{ManifestText: mText}).FileSystem(nil, kc)
+ if err != nil {
+ return nil, err
}
- copy(outbuf[:n], r.buf[:n])
- r.buf = r.buf[n:]
- return
+ return fs.OpenFile(filename, os.O_RDONLY, 0)
}
-func (r *cfReader) Close() error {
- _, _ = <-r.countDone
- for _ = range r.toGet {
+func (kc *KeepClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
+ fs, err := (&arvados.Collection{ManifestText: m.Text}).FileSystem(nil, kc)
+ if err != nil {
+ return nil, err
}
- for _ = range r.toRead {
- }
- return r.err
-}
-
-func (r *cfReader) Len() uint64 {
- // Wait for all segments to be counted
- _, _ = <-r.countDone
- return r.totalSize
-}
-
-func (r *cfReader) doGet() {
- defer close(r.toRead)
- for fs := range r.toGet {
- rdr, _, _, err := r.keepClient.Get(fs.Locator)
- if err != nil {
- r.err = err
- return
- }
- var buf = make([]byte, fs.Offset+fs.Len)
- _, err = io.ReadFull(rdr, buf)
- if err != nil {
- r.err = err
- return
- }
- for bOff, bLen := fs.Offset, 1<<20; bOff <= fs.Offset+fs.Len && bLen > 0; bOff += bLen {
- if bOff+bLen > fs.Offset+fs.Len {
- bLen = fs.Offset + fs.Len - bOff
- }
- r.toRead <- buf[bOff : bOff+bLen]
- }
- }
-}
-
-func newCFReader(kc *KeepClient) (r *cfReader) {
- r = new(cfReader)
- r.keepClient = kc
- r.toGet = make(chan *manifest.FileSegment, 2)
- r.toRead = make(chan []byte)
- r.countDone = make(chan struct{})
- go r.doGet()
- return
+ return fs.OpenFile(filename, os.O_RDONLY, 0)
}
projects / arvados.git / blobdiff