19070: Fix most tests

[arvados.git] / sdk / cwl / arvados_cwl / runner.py

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 6b670c73df4e6d58872193897223429337b4402f..10323c2be71fbe8dff186ca0d253ec6a896fccec 100644 (file)
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -402,7 +402,8 @@ def upload_dependencies(arvrunner, name, document_loader,
 
     keeprefs = set()
     def addkeepref(k):
-        keeprefs.add(collection_pdh_pattern.match(k).group(1))
+        if k.startswith("keep:"):
+            keeprefs.add(collection_pdh_pattern.match(k).group(1))
 
     def setloc(p):
         loc = p.get("location")