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Merge branch 'main' into 18842-arv-mount-disk-config
[arvados.git] / doc / _config.yml
diff --git a/doc/_config.yml b/doc/_config.yml
index 39fe22fde3e1379205a26e0e5f28ef398c3d3980..5c8d77382e0e89d6ef8f469e498415deb20f5535 100644 (file)
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -26,9 +26,10 @@ navbar:
       - user/getting_started/community.html.textile.liquid
     - Walkthough:
       - user/tutorials/wgs-tutorial.html.textile.liquid
-    - Run a workflow using Workbench:
+    - Using Workbench:
       - user/getting_started/workbench.html.textile.liquid
       - user/tutorials/tutorial-workflow-workbench.html.textile.liquid
+      - user/topics/workbench-migration.html.textile.liquid
     - Working at the Command Line:
       - user/getting_started/setup-cli.html.textile.liquid
       - user/reference/api-tokens.html.textile.liquid
@@ -49,6 +50,7 @@ navbar:
       - user/topics/storage-classes.html.textile.liquid
     - Data Analysis with Workflows:
       - user/cwl/arvados-vscode-training.html.md.liquid
+      - user/cwl/rnaseq-cwl-training.html.textile.liquid
       - user/cwl/cwl-runner.html.textile.liquid
       - user/cwl/cwl-run-options.html.textile.liquid
       - user/tutorials/writing-cwl-workflow.html.textile.liquid
@@ -87,6 +89,7 @@ navbar:
       - sdk/cli/index.html.textile.liquid
       - sdk/cli/reference.html.textile.liquid
       - sdk/cli/subcommands.html.textile.liquid
+      - sdk/cli/project-management.html.textile.liquid
     - Go:
       - sdk/go/index.html.textile.liquid
       - sdk/go/example.html.textile.liquid
@@ -100,12 +103,6 @@ navbar:
       - sdk/java-v2/index.html.textile.liquid
       - sdk/java-v2/example.html.textile.liquid
       - sdk/java-v2/javadoc.html.textile.liquid
-    - Java v1:
-      - sdk/java/index.html.textile.liquid
-      - sdk/java/example.html.textile.liquid
-    - Perl:
-      - sdk/perl/index.html.textile.liquid
-      - sdk/perl/example.html.textile.liquid
   api:
     - Concepts:
       - api/index.html.textile.liquid
@@ -132,6 +129,7 @@ navbar:
       - api/keep-s3.html.textile.liquid
       - api/keep-web-urls.html.textile.liquid
       - api/projects.html.textile.liquid
+      - api/properties.html.textile.liquid
       - api/methods/collections.html.textile.liquid
       - api/methods/repositories.html.textile.liquid
     - Container engine:
@@ -162,6 +160,8 @@ navbar:
     - Computation with Crunch:
       - api/execution.html.textile.liquid
       - architecture/dispatchcloud.html.textile.liquid
+      - architecture/hpc.html.textile.liquid
+      - architecture/singularity.html.textile.liquid
     - Other:
       - api/permission-model.html.textile.liquid
       - architecture/federation.html.textile.liquid
@@ -171,21 +171,22 @@ navbar:
     - Users and Groups:
       - admin/user-management.html.textile.liquid
       - admin/user-management-cli.html.textile.liquid
+      - admin/group-management.html.textile.liquid
       - admin/reassign-ownership.html.textile.liquid
       - admin/link-accounts.html.textile.liquid
-      - admin/group-management.html.textile.liquid
       - admin/federation.html.textile.liquid
       - admin/merge-remote-account.html.textile.liquid
       - admin/migrating-providers.html.textile.liquid
-      - user/topics/arvados-sync-groups.html.textile.liquid
+      - user/topics/arvados-sync-external-sources.html.textile.liquid
       - admin/scoped-tokens.html.textile.liquid
       - admin/token-expiration-policy.html.textile.liquid
-      - admin/user-activity.html.textile.liquid
     - Monitoring:
       - admin/logging.html.textile.liquid
       - admin/metrics.html.textile.liquid
       - admin/health-checks.html.textile.liquid
+      - admin/diagnostics.html.textile.liquid
       - admin/management-token.html.textile.liquid
+      - admin/user-activity.html.textile.liquid
     - Data Management:
       - admin/collection-versioning.html.textile.liquid
       - admin/collection-managed-properties.html.textile.liquid
@@ -193,7 +194,7 @@ navbar:
       - admin/keep-balance.html.textile.liquid
       - admin/controlling-container-reuse.html.textile.liquid
       - admin/logs-table-management.html.textile.liquid
-      - admin/workbench2-vocabulary.html.textile.liquid
+      - admin/metadata-vocabulary.html.textile.liquid
       - admin/storage-classes.html.textile.liquid
       - admin/keep-recovering-data.html.textile.liquid
       - admin/keep-measuring-deduplication.html.textile.liquid
@@ -209,8 +210,6 @@ navbar:
     - Docker quick start:
       - install/arvbox.html.textile.liquid
     - Installation with Salt:
-      - install/salt.html.textile.liquid
-      - install/salt-vagrant.html.textile.liquid
       - install/salt-single-host.html.textile.liquid
       - install/salt-multi-host.html.textile.liquid
     - Arvados on Kubernetes:
@@ -220,11 +219,13 @@ navbar:
     - Manual installation:
       - install/install-manual-prerequisites.html.textile.liquid
       - install/packages.html.textile.liquid
-      - admin/upgrading.html.textile.liquid
     - Configuration:
       - install/config.html.textile.liquid
-      - admin/config-migration.html.textile.liquid
+      - admin/config-urls.html.textile.liquid
       - admin/config.html.textile.liquid
+    - Maintenance and upgrading:
+      - admin/upgrading.html.textile.liquid
+      - admin/maintenance-and-upgrading.html.textile.liquid
     - Core:
       - install/install-api-server.html.textile.liquid
     - Keep:
@@ -245,15 +246,20 @@ navbar:
       - install/install-shell-server.html.textile.liquid
       - install/install-webshell.html.textile.liquid
       - install/install-arv-git-httpd.html.textile.liquid
-    - Containers API (cloud):
+    - Containers API (all):
       - install/install-jobs-image.html.textile.liquid
+    - Containers API (cloud):
       - install/crunch2-cloud/install-compute-node.html.textile.liquid
       - install/crunch2-cloud/install-dispatch-cloud.html.textile.liquid
-    - Containers API (slurm):
+    - Compute nodes (Slurm or LSF):
+      - install/crunch2/install-compute-node-docker.html.textile.liquid
+      - install/crunch2/install-compute-node-singularity.html.textile.liquid
+    - Containers API (Slurm):
       - install/crunch2-slurm/install-dispatch.html.textile.liquid
       - install/crunch2-slurm/configure-slurm.html.textile.liquid
-      - install/crunch2-slurm/install-compute-node.html.textile.liquid
       - install/crunch2-slurm/install-test.html.textile.liquid
+    - Containers API (LSF):
+      - install/crunch2-lsf/install-dispatch.html.textile.liquid
     - Additional configuration:
       - install/container-shell-access.html.textile.liquid
     - External dependencies: