+
+ {
+ i = 0
+ cr.Container.RuntimeConstraints.KeepCacheRAM = 512
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
+ "/keepout": {Kind: "collection", Writable: true},
+ }
+ cr.OutputPath = "/keepout"
+
+ os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
+ os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
+
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ c.Check(am.Cmd, DeepEquals, []string{"--foreground", "--allow-other", "--read-write", "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", realTemp + "/keep1"})
+ sort.StringSlice(cr.Binds).Sort()
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53:/keepinp:ro",
+ realTemp + "/keep1/tmp0:/keepout"})
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+
+ for _, test := range []struct {
+ in interface{}
+ out string
+ }{
+ {in: "foo", out: `"foo"`},
+ {in: nil, out: `null`},
+ {in: map[string]int{"foo": 123}, out: `{"foo":123}`},
+ } {
+ i = 0
+ cr.Container.Mounts = map[string]arvados.Mount{
+ "/mnt/test.json": {Kind: "json", Content: test.in},
+ }
+ err := cr.SetupMounts()
+ c.Check(err, IsNil)
+ sort.StringSlice(cr.Binds).Sort()
+ c.Check(cr.Binds, DeepEquals, []string{realTemp + "/2/mountdata.json:/mnt/test.json:ro"})
+ content, err := ioutil.ReadFile(realTemp + "/2/mountdata.json")
+ c.Check(err, IsNil)
+ c.Check(content, DeepEquals, []byte(test.out))
+ cr.CleanupDirs()
+ checkEmpty()
+ }
+}
+
+func (s *TestSuite) TestStdout(c *C) {
+ helperRecord := `{
+ "command": ["/bin/sh", "-c", "echo $FROBIZ"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {"FROBIZ": "bilbo"},
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {}
+ }`
+
+ api, _ := FullRunHelper(c, helperRecord, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[0][7:]+"\n"))
+ t.logWriter.Close()
+ t.finish <- dockerclient.WaitResult{ExitCode: 0}
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil)
+}
+
+// Used by the TestStdoutWithWrongPath*()
+func StdoutErrorRunHelper(c *C, record string, fn func(t *TestDockerClient)) (api *ArvTestClient, cr *ContainerRunner, err error) {
+ rec := arvados.Container{}
+ err = json.Unmarshal([]byte(record), &rec)
+ c.Check(err, IsNil)
+
+ docker := NewTestDockerClient()
+ docker.fn = fn
+ docker.RemoveImage(hwImageId, true)
+
+ api = &ArvTestClient{Container: rec}
+ cr = NewContainerRunner(api, &KeepTestClient{}, docker, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
+ am := &ArvMountCmdLine{}
+ cr.RunArvMount = am.ArvMountTest
+
+ err = cr.Run()
+ return
+}
+
+func (s *TestSuite) TestStdoutWithWrongPath(c *C) {
+ _, _, err := StdoutErrorRunHelper(c, `{
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path":"/tmpa.out"} },
+ "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+ c.Check(err, NotNil)
+ c.Check(strings.Contains(err.Error(), "Stdout path does not start with OutputPath"), Equals, true)
+}
+
+func (s *TestSuite) TestStdoutWithWrongKindTmp(c *C) {
+ _, _, err := StdoutErrorRunHelper(c, `{
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "tmp", "path":"/tmp/a.out"} },
+ "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+ c.Check(err, NotNil)
+ c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'tmp' for stdout"), Equals, true)
+}
+
+func (s *TestSuite) TestStdoutWithWrongKindCollection(c *C) {
+ _, _, err := StdoutErrorRunHelper(c, `{
+ "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "collection", "path":"/tmp/a.out"} },
+ "output_path": "/tmp"
+}`, func(t *TestDockerClient) {})
+
+ c.Check(err, NotNil)
+ c.Check(strings.Contains(err.Error(), "Unsupported mount kind 'collection' for stdout"), Equals, true)
+}
+
+func (s *TestSuite) TestFullRunWithAPI(c *C) {
+ os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
+ defer os.Unsetenv("ARVADOS_API_HOST")
+ api, _ := FullRunHelper(c, `{
+ "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {"API": true}
+}`, func(t *TestDockerClient) {
+ t.logWriter.Write(dockerLog(1, t.env[1][17:]+"\n"))
+ t.logWriter.Close()
+ t.finish <- dockerclient.WaitResult{ExitCode: 0}
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(strings.HasSuffix(api.Logs["stdout"].String(), "test.arvados.org\n"), Equals, true)
+ c.Check(api.CalledWith("container.output", "d41d8cd98f00b204e9800998ecf8427e+0"), NotNil)
+}
+
+func (s *TestSuite) TestFullRunSetOutput(c *C) {
+ os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
+ defer os.Unsetenv("ARVADOS_API_HOST")
+ api, _ := FullRunHelper(c, `{
+ "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
+ "container_image": "d4ab34d3d4f8a72f5c4973051ae69fab+122",
+ "cwd": "/bin",
+ "environment": {},
+ "mounts": {"/tmp": {"kind": "tmp"} },
+ "output_path": "/tmp",
+ "priority": 1,
+ "runtime_constraints": {"API": true}
+}`, func(t *TestDockerClient) {
+ t.api.Container.Output = "d4ab34d3d4f8a72f5c4973051ae69fab+122"
+ t.logWriter.Close()
+ t.finish <- dockerclient.WaitResult{ExitCode: 0}
+ })
+
+ c.Check(api.CalledWith("container.exit_code", 0), NotNil)
+ c.Check(api.CalledWith("container.state", "Complete"), NotNil)
+ c.Check(api.CalledWith("container.output", "d4ab34d3d4f8a72f5c4973051ae69fab+122"), NotNil)