+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
module ProvenanceHelper
class GenerateGraph
return "\"#{uuid}\" [label=\"(empty collection)\"];\n"
end
- href = url_for ({:controller => Collection.to_s.tableize,
- :action => :show,
- :id => uuid.to_s })
+ if describe_opts[:col_uuid]
+ href = url_for ({:controller => Collection.to_s.tableize,
+ :action => :show,
+ :id => describe_opts[:col_uuid].to_s })
+ else
+ href = url_for ({:controller => Collection.to_s.tableize,
+ :action => :show,
+ :id => uuid.to_s })
+ end
return "\"#{uuid}\" [label=\"#{encode_quotes(describe_opts[:label] || (@pdata[uuid] and @pdata[uuid][:name]) || uuid)}\",shape=box,href=\"#{href}\",#{bgcolor}];\n"
else
gr
end
- def cr_input_pdhs cr
- pdhs = []
- input_obj = cr[:mounts].andand[:"/var/lib/cwl/cwl.input.json"].andand[:content] || cr[:mounts]
- if input_obj
- ProvenanceHelper::find_collections input_obj do |col_hash, col_uuid, key|
- if col_hash
- pdhs << col_hash
- end
- end
- end
- pdhs
- end
-
def job_edges job, edge_opts={}
uuid = job_uuid(job)
gr = ""
elsif rsc == ContainerRequest
cr = @pdata[uuid]
if cr
- child_crs = []
- col_uuids = []
- col_pdhs = []
- col_uuids << cr[:output_uuid] if cr[:output_uuid]
- col_pdhs += cr_input_pdhs(cr)
- # Search for child CRs
- if cr[:container_uuid]
- child_crs = ContainerRequest.where(requesting_container_uuid: cr[:container_uuid])
- child_crs.each do |child|
- col_uuids << child[:output_uuid] if child[:output_uuid]
- col_pdhs += cr_input_pdhs(child)
+ gr += describe_node(cr[:uuid], {href: {controller: 'container_requests',
+ id: cr[:uuid]},
+ label: cr[:name],
+ shape: 'oval'})
+ # Connect child CRs
+ children = @opts[:cr_children_of].andand[cr[:uuid]]
+ if children
+ children.each do |child|
+ gr += edge(child[:uuid], cr[:uuid], {label: 'child'})
end
end
-
- output_cols = {} # Indexed by UUID
- input_cols = {} # Indexed by PDH
-
- # Batch requests to get all related collections
- Collection.filter([['uuid', 'in', col_uuids.uniq]]).each do |c|
- output_cols[c[:uuid]] = c
- end
- output_pdhs = output_cols.values.map{|c| c[:portable_data_hash]}.uniq
- Collection.filter([['portable_data_hash', 'in', col_pdhs - output_pdhs]]).each do |c|
- if input_cols[c[:portable_data_hash]]
- input_cols[c[:portable_data_hash]] << c
- else
- input_cols[c[:portable_data_hash]] = [c]
- end
+ # Output collection node
+ if cr[:output_uuid] and @opts[:output_collections][cr[:output_uuid]]
+ c = @opts[:output_collections][cr[:output_uuid]]
+ gr += describe_node(c[:portable_data_hash],
+ {
+ label: c[:name],
+ col_uuid: c[:uuid],
+ })
+ gr += edge(cr[:uuid],
+ c[:portable_data_hash],
+ {label: 'output'})
end
-
- # Make the graph
- visited_pdhs = []
- all_cr_nodes = [cr] + child_crs.results
-
- # First pass: add the CR nodes with their outputs, because they're
- # referenced by UUID.
- all_cr_nodes.each do |cr_node|
- # CR node
- gr += describe_node(cr_node[:uuid], {href: {controller: 'container_requests',
- id: cr_node[:uuid]},
- label: cr_node[:name],
- shape: 'oval'})
- # Connect child CRs with the main one
- if cr_node != cr
- gr += edge(cr_node[:uuid], cr[:uuid], {label: 'child'})
- end
- # Output collection node
- if cr_node[:output_uuid] and output_cols[cr_node[:output_uuid]]
- c = output_cols[cr_node[:output_uuid]]
- visited_pdhs << c[:portable_data_hash]
- gr += describe_node(c[:portable_data_hash], {label: c[:name]})
- gr += edge(cr_node[:uuid], c[:portable_data_hash], {label: 'output'})
- end
- end
-
- # Second pass: add the input collection nodes.
- all_cr_nodes.each do |cr_node|
- cr_input_pdhs(cr_node).each do |pdh|
- if not visited_pdhs.include?(pdh)
- visited_pdhs << pdh
- if input_cols[pdh]
- # First search for collections within the CR project
- cols = input_cols[pdh].select{|x| x[:owner_uuid] == cr_node[:owner_uuid]}
- if cols.empty?
- # Search for any collection with this PDH
- cols = input_cols[pdh]
- end
- names = cols.collect{|x| x[:name]}.uniq
- input_name = names.first
- if names.length > 1
- input_name += " + #{names.length - 1} others"
- end
- else
- # No collection found by this PDH
- input_name = pdh
- end
- gr += describe_node(pdh, {label: input_name})
+ # Input collection nodes
+ output_pdhs = @opts[:output_collections].values.collect{|c|
+ c[:portable_data_hash]}
+ ProvenanceHelper::cr_input_pdhs(cr).each do |pdh|
+ if not output_pdhs.include?(pdh)
+ # Search for collections on the same project first
+ cols = @opts[:input_collections][pdh].andand.select{|c|
+ c[:owner_uuid] == cr[:owner_uuid]}
+ if not cols or cols.empty?
+ # Search for any collection with this PDH
+ cols = @opts[:input_collections][pdh]
+ end
+ names = cols.collect{|x| x[:name]}.uniq
+ input_name = names.first
+ if names.length > 1
+ input_name += " + #{names.length - 1} more"
end
- gr += edge(pdh, cr_node[:uuid], {label: 'input'})
+ gr += describe_node(pdh, {label: input_name})
end
+ gr += edge(pdh, cr[:uuid], {label: 'input'})
end
end
end
end
end
end
+
+ def self.cr_input_pdhs cr
+ pdhs = []
+ input_obj = cr[:mounts].andand[:"/var/lib/cwl/cwl.input.json"].andand[:content] || cr[:mounts]
+ if input_obj
+ find_collections input_obj do |col_hash, col_uuid, key|
+ if col_hash
+ pdhs << col_hash
+ end
+ end
+ end
+ pdhs
+ end
end
projects / arvados.git / blobdiff