"bufio"
"bytes"
"context"
+ "errors"
"flag"
"fmt"
"io"
"os"
"os/exec"
+ "os/user"
+ "path/filepath"
"strconv"
"strings"
"syscall"
"github.com/lib/pq"
)
-var Command cmd.Handler = installCommand{}
+var Command cmd.Handler = &installCommand{}
const devtestDatabasePassword = "insecure_arvados_test"
-type installCommand struct{}
+type installCommand struct {
+ ClusterType string
+ SourcePath string
+ PackageVersion string
+}
-func (installCommand) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
+func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
logger := ctxlog.New(stderr, "text", "info")
ctx := ctxlog.Context(context.Background(), logger)
ctx, cancel := context.WithCancel(ctx)
flags := flag.NewFlagSet(prog, flag.ContinueOnError)
flags.SetOutput(stderr)
versionFlag := flags.Bool("version", false, "Write version information to stdout and exit 0")
- clusterType := flags.String("type", "production", "cluster `type`: development, test, or production")
+ flags.StringVar(&inst.ClusterType, "type", "production", "cluster `type`: development, test, production, or package")
+ flags.StringVar(&inst.SourcePath, "source", "/arvados", "source tree location (required for -type=package)")
+ flags.StringVar(&inst.PackageVersion, "package-version", "0.0.0", "version string to embed in executable files")
err = flags.Parse(args)
if err == flag.ErrHelp {
err = nil
return 2
} else if *versionFlag {
return cmd.Version.RunCommand(prog, args, stdin, stdout, stderr)
+ } else if len(flags.Args()) > 0 {
+ err = fmt.Errorf("unrecognized command line arguments: %v", flags.Args())
+ return 2
}
- var dev, test, prod bool
- switch *clusterType {
+ var dev, test, prod, pkg bool
+ switch inst.ClusterType {
case "development":
dev = true
case "test":
test = true
case "production":
prod = true
+ case "package":
+ pkg = true
default:
- err = fmt.Errorf("cluster type must be 'development', 'test', or 'production'")
+ err = fmt.Errorf("invalid cluster type %q (must be 'development', 'test', 'production', or 'package')", inst.ClusterType)
return 2
}
+ if prod {
+ err = errors.New("production install is not yet implemented")
+ return 1
+ }
+
osv, err := identifyOS()
if err != nil {
return 1
}
}
- if dev || test {
- debs := []string{
+ pkgs := prodpkgs(osv)
+
+ if pkg {
+ pkgs = append(pkgs,
+ "dpkg-dev",
+ "rsync",
+ )
+ }
+
+ if dev || test || pkg {
+ pkgs = append(pkgs,
+ "automake",
"bison",
"bsdmainutils",
"build-essential",
"cadaver",
"curl",
- "cython",
+ "cython3",
"daemontools", // lib/boot uses setuidgid to drop privileges when running as root
- "fuse",
+ "default-jdk-headless",
+ "default-jre-headless",
"gettext",
- "git",
- "gitolite3",
- "graphviz",
- "haveged",
"iceweasel",
"libattr1-dev",
"libcrypt-ssleay-perl",
- "libcrypt-ssleay-perl",
- "libcurl3-gnutls",
- "libcurl4-openssl-dev",
"libfuse-dev",
"libgnutls28-dev",
"libjson-perl",
- "libjson-perl",
"libpam-dev",
"libpcre3-dev",
"libpq-dev",
- "libpython2.7-dev",
"libreadline-dev",
"libssl-dev",
"libwww-perl",
"libxml2-dev",
- "libxslt1.1",
+ "libxslt1-dev",
"linkchecker",
"lsof",
+ "make",
"net-tools",
- "nginx",
"pandoc",
"perl-modules",
"pkg-config",
"postgresql",
"postgresql-contrib",
- "python",
"python3-dev",
- "python-epydoc",
+ "python3-venv",
+ "python3-virtualenv",
"r-base",
"r-cran-testthat",
+ "r-cran-devtools",
+ "r-cran-knitr",
+ "r-cran-markdown",
+ "r-cran-roxygen2",
+ "r-cran-xml",
"sudo",
- "virtualenv",
"wget",
"xvfb",
- "zlib1g-dev",
- }
+ )
switch {
case osv.Debian && osv.Major >= 10:
- debs = append(debs, "libcurl4")
+ pkgs = append(pkgs, "libcurl4")
default:
- debs = append(debs, "libcurl3")
+ pkgs = append(pkgs, "libcurl3")
}
cmd := exec.CommandContext(ctx, "apt-get", "install", "--yes", "--no-install-recommends")
- cmd.Args = append(cmd.Args, debs...)
+ cmd.Args = append(cmd.Args, pkgs...)
cmd.Env = append(os.Environ(), "DEBIAN_FRONTEND=noninteractive")
cmd.Stdout = stdout
cmd.Stderr = stderr
}
os.Mkdir("/var/lib/arvados", 0755)
+ os.Mkdir("/var/lib/arvados/tmp", 0700)
+ if prod || pkg {
+ os.Mkdir("/var/lib/arvados/wwwtmp", 0700)
+ u, er := user.Lookup("www-data")
+ if er != nil {
+ err = fmt.Errorf("user.Lookup(%q): %w", "www-data", er)
+ return 1
+ }
+ uid, _ := strconv.Atoi(u.Uid)
+ gid, _ := strconv.Atoi(u.Gid)
+ err = os.Chown("/var/lib/arvados/wwwtmp", uid, gid)
+ if err != nil {
+ return 1
+ }
+ }
rubyversion := "2.5.7"
if haverubyversion, err := exec.Command("/var/lib/arvados/bin/ruby", "-v").CombinedOutput(); err == nil && bytes.HasPrefix(haverubyversion, []byte("ruby "+rubyversion)) {
logger.Print("ruby " + rubyversion + " already installed")
} else {
err = runBash(`
-mkdir -p /var/lib/arvados/tmp
+tmp=/var/lib/arvados/tmp/ruby-`+rubyversion+`
+trap "rm -r ${tmp}" ERR
wget --progress=dot:giga -O- https://cache.ruby-lang.org/pub/ruby/2.5/ruby-`+rubyversion+`.tar.gz | tar -C /var/lib/arvados/tmp -xzf -
-cd /var/lib/arvados/tmp/ruby-`+rubyversion+`
-./configure --disable-install-doc --prefix /var/lib/arvados
-make -j4
+cd ${tmp}
+./configure --disable-install-static-library --enable-shared --disable-install-doc --prefix /var/lib/arvados
+make -j8
make install
-/var/lib/arvados/bin/gem install bundler
-cd /var/lib/arvados/tmp
-rm -r ruby-`+rubyversion+`
+/var/lib/arvados/bin/gem install bundler --no-ri --no-rdoc
+# "gem update --system" can be removed when we use ruby ≥2.6.3: https://bundler.io/blog/2019/05/14/solutions-for-cant-find-gem-bundler-with-executable-bundle.html
+/var/lib/arvados/bin/gem update --system --no-ri --no-rdoc
+rm -r ${tmp}
`, stdout, stderr)
if err != nil {
return 1
return 1
}
}
+ }
+ if !prod && !pkg {
pjsversion := "1.9.8"
if havepjsversion, err := exec.Command("/usr/local/bin/phantomjs", "--version").CombinedOutput(); err == nil && string(havepjsversion) == "1.9.8\n" {
logger.Print("phantomjs " + pjsversion + " already installed")
}
}
+ gradleversion := "5.3.1"
+ if havegradleversion, err := exec.Command("/usr/local/bin/gradle", "--version").CombinedOutput(); err == nil && strings.Contains(string(havegradleversion), "Gradle "+gradleversion+"\n") {
+ logger.Print("gradle " + gradleversion + " already installed")
+ } else {
+ err = runBash(`
+G=`+gradleversion+`
+zip=/var/lib/arvados/tmp/gradle-${G}-bin.zip
+trap "rm ${zip}" ERR
+wget --progress=dot:giga -O${zip} https://services.gradle.org/distributions/gradle-${G}-bin.zip
+unzip -o -d /var/lib/arvados ${zip}
+ln -sf /var/lib/arvados/gradle-${G}/bin/gradle /usr/local/bin/
+rm ${zip}
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ // The entry in /etc/locale.gen is "en_US.UTF-8"; once
+ // it's installed, locale -a reports it as
+ // "en_US.utf8".
wantlocale := "en_US.UTF-8"
- if havelocales, err := exec.Command("locale", "-a").CombinedOutput(); err == nil && bytes.Contains(havelocales, []byte(wantlocale+"\n")) {
+ if havelocales, err := exec.Command("locale", "-a").CombinedOutput(); err == nil && bytes.Contains(havelocales, []byte(strings.Replace(wantlocale+"\n", "UTF-", "utf", 1))) {
logger.Print("locale " + wantlocale + " already installed")
} else {
err = runBash(`sed -i 's/^# *\(`+wantlocale+`\)/\1/' /etc/locale.gen && locale-gen`, stdout, stderr)
DataDirectory string
LogFile string
}
- if pg_lsclusters, err2 := exec.Command("pg_lsclusters", "--no-header").CombinedOutput(); err2 != nil {
+ if pgLsclusters, err2 := exec.Command("pg_lsclusters", "--no-header").CombinedOutput(); err2 != nil {
err = fmt.Errorf("pg_lsclusters: %s", err2)
return 1
- } else if pgclusters := strings.Split(strings.TrimSpace(string(pg_lsclusters)), "\n"); len(pgclusters) != 1 {
+ } else if pgclusters := strings.Split(strings.TrimSpace(string(pgLsclusters)), "\n"); len(pgclusters) != 1 {
logger.Warnf("pg_lsclusters returned %d postgresql clusters -- skipping postgresql initdb/startup, hope that's ok", len(pgclusters))
} else if _, err = fmt.Sscanf(pgclusters[0], "%s %s %d %s %s %s %s", &pgc.Version, &pgc.Cluster, &pgc.Port, &pgc.Status, &pgc.Owner, &pgc.DataDirectory, &pgc.LogFile); err != nil {
err = fmt.Errorf("error parsing pg_lsclusters output: %s", err)
}
defer func() {
cmd.Process.Signal(syscall.SIGTERM)
- logger.Infof("sent SIGTERM; waiting for postgres to shut down")
+ logger.Info("sent SIGTERM; waiting for postgres to shut down")
cmd.Wait()
}()
- for deadline := time.Now().Add(10 * time.Second); ; {
- output, err2 := exec.Command("pg_isready").CombinedOutput()
- if err2 == nil {
- break
- } else if time.Now().After(deadline) {
- err = fmt.Errorf("timed out waiting for pg_isready (%q)", output)
- return 1
- } else {
- time.Sleep(time.Second)
- }
+ err = waitPostgreSQLReady()
+ if err != nil {
+ return 1
}
}
// might never have been run.
}
- withstuff := "WITH SUPERUSER ENCRYPTED PASSWORD " + pq.QuoteLiteral(devtestDatabasePassword)
- if err := exec.Command("sudo", "-u", "postgres", "psql", "-c", "ALTER ROLE arvados "+withstuff).Run(); err == nil {
+ var needcoll []string
+ // If the en_US.UTF-8 locale wasn't installed when
+ // postgresql initdb ran, it needs to be added
+ // explicitly before we can use it in our test suite.
+ for _, collname := range []string{"en_US", "en_US.UTF-8"} {
+ cmd := exec.Command("sudo", "-u", "postgres", "psql", "-t", "-c", "SELECT 1 FROM pg_catalog.pg_collation WHERE collname='"+collname+"' AND collcollate IN ('en_US.UTF-8', 'en_US.utf8')")
+ cmd.Dir = "/"
+ out, err2 := cmd.CombinedOutput()
+ if err != nil {
+ err = fmt.Errorf("error while checking postgresql collations: %s", err2)
+ return 1
+ }
+ if strings.Contains(string(out), "1") {
+ logger.Infof("postgresql supports collation %s", collname)
+ } else {
+ needcoll = append(needcoll, collname)
+ }
+ }
+ if len(needcoll) > 0 && os.Getpid() != 1 {
+ // In order for the CREATE COLLATION statement
+ // below to work, the locale must have existed
+ // when PostgreSQL started up. If we're
+ // running as init, we must have started
+ // PostgreSQL ourselves after installing the
+ // locales. Otherwise, it might need a
+ // restart, so we attempt to restart it with
+ // systemd.
+ if err = runBash(`sudo systemctl restart postgresql`, stdout, stderr); err != nil {
+ logger.Warn("`systemctl restart postgresql` failed; hoping postgresql does not need to be restarted")
+ } else if err = waitPostgreSQLReady(); err != nil {
+ return 1
+ }
+ }
+ for _, collname := range needcoll {
+ cmd := exec.Command("sudo", "-u", "postgres", "psql", "-c", "CREATE COLLATION \""+collname+"\" (LOCALE = \"en_US.UTF-8\")")
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ cmd.Dir = "/"
+ err = cmd.Run()
+ if err != nil {
+ err = fmt.Errorf("error adding postgresql collation %s: %s", collname, err)
+ return 1
+ }
+ }
+
+ withstuff := "WITH LOGIN SUPERUSER ENCRYPTED PASSWORD " + pq.QuoteLiteral(devtestDatabasePassword)
+ cmd := exec.Command("sudo", "-u", "postgres", "psql", "-c", "ALTER ROLE arvados "+withstuff)
+ cmd.Dir = "/"
+ if err := cmd.Run(); err == nil {
logger.Print("arvados role exists; superuser privileges added, password updated")
} else {
cmd := exec.Command("sudo", "-u", "postgres", "psql", "-c", "CREATE ROLE arvados "+withstuff)
+ cmd.Dir = "/"
cmd.Stdout = stdout
cmd.Stderr = stderr
err = cmd.Run()
}
}
+ if prod || pkg {
+ // Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
+ for dstdir, srcdir := range map[string]string{
+ "railsapi": "services/api",
+ "workbench1": "apps/workbench",
+ } {
+ fmt.Fprintf(stderr, "building %s...\n", srcdir)
+ cmd := exec.Command("rsync",
+ "-a", "--no-owner", "--delete-after", "--delete-excluded",
+ "--exclude", "/coverage",
+ "--exclude", "/log",
+ "--exclude", "/tmp",
+ "--exclude", "/vendor",
+ "./", "/var/lib/arvados/"+dstdir+"/")
+ cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ for _, cmdline := range [][]string{
+ {"mkdir", "-p", "log", "tmp", ".bundle", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger"},
+ {"touch", "log/production.log"},
+ {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger", "log", "tmp", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:1.16.6", "bundler:1.17.3", "bundler:2.0.2"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
+ } {
+ cmd = exec.Command(cmdline[0], cmdline[1:]...)
+ cmd.Env = append([]string{}, os.Environ()...)
+ cmd.Dir = "/var/lib/arvados/" + dstdir
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ fmt.Fprintf(stderr, "... %s\n", cmd.Args)
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ }
+ cmd = exec.Command("sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "validate-install")
+ cmd.Dir = "/var/lib/arvados/" + dstdir
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil && !strings.Contains(err.Error(), "exit status 2") {
+ // Exit code 2 indicates there were warnings (like
+ // "other passenger installations have been detected",
+ // which we can't expect to avoid) but no errors.
+ // Other non-zero exit codes (1, 9) indicate errors.
+ return 1
+ }
+ }
+
+ // Install Go programs to /var/lib/arvados/bin/
+ for _, srcdir := range []string{
+ "cmd/arvados-client",
+ "cmd/arvados-server",
+ "services/arv-git-httpd",
+ "services/crunch-dispatch-local",
+ "services/crunch-dispatch-slurm",
+ "services/health",
+ "services/keep-balance",
+ "services/keep-web",
+ "services/keepproxy",
+ "services/keepstore",
+ "services/ws",
+ } {
+ fmt.Fprintf(stderr, "building %s...\n", srcdir)
+ cmd := exec.Command("go", "install", "-ldflags", "-X git.arvados.org/arvados.git/lib/cmd.version="+inst.PackageVersion+" -X main.version="+inst.PackageVersion)
+ cmd.Env = append([]string{"GOBIN=/var/lib/arvados/bin"}, os.Environ()...)
+ cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ }
+
+ // Copy assets from source tree to /var/lib/arvados/share
+ cmd := exec.Command("install", "-v", "-t", "/var/lib/arvados/share", filepath.Join(inst.SourcePath, "sdk/python/tests/nginx.conf"))
+ cmd.Stdout = stdout
+ cmd.Stderr = stderr
+ err = cmd.Run()
+ if err != nil {
+ return 1
+ }
+ }
+
return 0
}
type osversion struct {
Debian bool
Ubuntu bool
+ Centos bool
Major int
}
osv.Ubuntu = true
case "debian":
osv.Debian = true
+ case "centos":
+ osv.Centos = true
default:
return osv, fmt.Errorf("unsupported ID in /etc/os-release: %q", kv["ID"])
}
}
osv.Major, err = strconv.Atoi(vstr)
if err != nil {
- return osv, fmt.Errorf("incomprehensible VERSION_ID in /etc/os/release: %q", kv["VERSION_ID"])
+ return osv, fmt.Errorf("incomprehensible VERSION_ID in /etc/os-release: %q", kv["VERSION_ID"])
}
return osv, nil
}
+func waitPostgreSQLReady() error {
+ for deadline := time.Now().Add(10 * time.Second); ; {
+ output, err := exec.Command("pg_isready").CombinedOutput()
+ if err == nil {
+ return nil
+ } else if time.Now().After(deadline) {
+ return fmt.Errorf("timed out waiting for pg_isready (%q)", output)
+ } else {
+ time.Sleep(time.Second)
+ }
+ }
+}
+
func runBash(script string, stdout, stderr io.Writer) error {
cmd := exec.Command("bash", "-")
cmd.Stdin = bytes.NewBufferString("set -ex -o pipefail\n" + script)
cmd.Stderr = stderr
return cmd.Run()
}
+
+func prodpkgs(osv osversion) []string {
+ pkgs := []string{
+ "ca-certificates",
+ "curl",
+ "fuse",
+ "git",
+ "gitolite3",
+ "graphviz",
+ "haveged",
+ "libcurl3-gnutls",
+ "libxslt1.1",
+ "nginx",
+ "python",
+ "sudo",
+ }
+ if osv.Debian || osv.Ubuntu {
+ if osv.Debian && osv.Major == 8 {
+ pkgs = append(pkgs, "libgnutls-deb0-28") // sdk/cwl
+ } else if osv.Debian && osv.Major >= 10 || osv.Ubuntu && osv.Major >= 16 {
+ pkgs = append(pkgs, "python3-distutils") // sdk/cwl
+ }
+ return append(pkgs,
+ "g++",
+ "libcurl4-openssl-dev", // services/api
+ "libpq-dev",
+ "libpython2.7", // services/fuse
+ "mime-support", // keep-web
+ "zlib1g-dev", // services/api
+ )
+ } else if osv.Centos {
+ return append(pkgs,
+ "fuse-libs", // services/fuse
+ "gcc",
+ "gcc-c++",
+ "libcurl-devel", // services/api
+ "mailcap", // keep-web
+ "postgresql-devel", // services/api
+ )
+ } else {
+ panic("os version not supported")
+ }
+}
+
+func ProductionDependencies() ([]string, error) {
+ osv, err := identifyOS()
+ if err != nil {
+ return nil, err
+ }
+ return prodpkgs(osv), nil
+}
projects / arvados.git / blobdiff