+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
module ProvenanceHelper
class GenerateGraph
return "\"#{uuid}\" [label=\"(empty collection)\"];\n"
end
- href = url_for ({:controller => Collection.to_s.tableize,
- :action => :show,
- :id => uuid.to_s })
+ if describe_opts[:col_uuid]
+ href = url_for ({:controller => Collection.to_s.tableize,
+ :action => :show,
+ :id => describe_opts[:col_uuid].to_s })
+ else
+ href = url_for ({:controller => Collection.to_s.tableize,
+ :action => :show,
+ :id => uuid.to_s })
+ end
return "\"#{uuid}\" [label=\"#{encode_quotes(describe_opts[:label] || (@pdata[uuid] and @pdata[uuid][:name]) || uuid)}\",shape=box,href=\"#{href}\",#{bgcolor}];\n"
else
gr
end
- def cr_edges cr
- uuid = cr[:uuid]
- gr = ""
-
- # Search for input mounts
- input_obj = cr[:mounts].andand[:"/var/lib/cwl/cwl.input.json"].andand[:content] || cr[:mounts] || {}
- if input_obj
- ProvenanceHelper::find_collections input_obj, 'input' do |col_hash, col_uuid, key|
- if col_uuid
- gr += describe_node(col_uuid)
- gr += edge(col_uuid, uuid, {:label => key})
- else
- gr += describe_node(col_hash)
- gr += edge(col_hash, uuid, {:label => key})
- end
- end
- end
-
- [
- [:output_uuid, 'output'],
- [:log_uuid, 'log']
- ].each do |attr, label|
- if cr[attr]
- gr += describe_node(cr[attr])
- gr += edge(uuid, cr[attr], {label: label})
- end
- end
-
- gr
- end
-
def job_edges job, edge_opts={}
uuid = job_uuid(job)
gr = ""
gr
end
+ def cr_edges cont, edge_opts={}
+ uuid = cont[:uuid]
+ gr = ""
+
+ gr += describe_node(cont[:uuid], {href: {controller: 'container_requests',
+ id: cont[:uuid]},
+ shape: 'oval',
+ label: cont[:name]})
+
+ ProvenanceHelper::find_collections cont[:mounts] do |collection_hash, collection_uuid, key|
+ if @opts[:pdh_to_uuid] and @opts[:pdh_to_uuid][collection_hash]
+ collection_uuid = @opts[:pdh_to_uuid][collection_hash].uuid
+ collection_hash = nil
+ end
+ if collection_uuid and @pdata[collection_uuid]
+ gr += describe_node(collection_uuid)
+ gr += edge(collection_uuid, uuid, {:label => key})
+ elsif collection_hash and @pdata[collection_hash]
+ gr += describe_node(collection_hash)
+ gr += edge(collection_hash, uuid, {:label => key})
+ end
+ end
+
+ if cont[:container_image] and !@opts[:no_docker] and @pdata[cont[:container_image]]
+ gr += describe_node(cont[:container_image], {label: cont[:container_image]})
+ gr += edge(cont[:container_image], uuid, {label: "docker_image"})
+ end
+
+ if cont[:output_uuid] and !edge_opts[:no_output] and @pdata[cont[:output_uuid]]
+ gr += describe_node(cont[:output_uuid])
+ gr += edge(uuid, cont[:output_uuid], {label: "output" })
+ end
+
+ if cont[:log_uuid] and !edge_opts[:no_log] and @pdata[cont[:log_uuid]]
+ gr += describe_node(cont[:log_uuid])
+ gr += edge(uuid, cont[:log_uuid], {label: "log"})
+ end
+
+ gr
+ end
+
+ def container_edges cont, edge_opts={}
+ uuid = cont[:uuid]
+ gr = ""
+
+ gr += describe_node(cont[:uuid], {href: {controller: 'containers',
+ id: cont[:uuid]},
+ shape: 'oval'})
+
+ ProvenanceHelper::find_collections cont[:mounts] do |collection_hash, collection_uuid, key|
+ if collection_uuid and @pdata[collection_uuid]
+ gr += describe_node(collection_uuid)
+ gr += edge(collection_uuid, uuid, {:label => key})
+ elsif collection_hash and @pdata[collection_hash]
+ gr += describe_node(collection_hash)
+ gr += edge(collection_hash, uuid, {:label => key})
+ end
+ end
+
+ if cont[:container_image] and !@opts[:no_docker] and @pdata[cont[:container_image]]
+ gr += describe_node(cont[:container_image], {label: cont[:container_image]})
+ gr += edge(cont[:container_image], uuid, {label: "docker_image"})
+ end
+
+ if cont[:output] and !edge_opts[:no_output] and @pdata[cont[:output]]
+ gr += describe_node(cont[:output])
+ gr += edge(uuid, cont[:output], {label: "output" })
+ end
+
+ if cont[:log] and !edge_opts[:no_log] and @pdata[cont[:log]]
+ gr += describe_node(cont[:log])
+ gr += edge(uuid, cont[:log], {label: "log"})
+ end
+
+ gr
+ end
+
def generate_provenance_edges(uuid)
gr = ""
m = GenerateGraph::collection_uuid(uuid)
gr += job_edges job if job
elsif rsc == ContainerRequest
cr = @pdata[uuid]
- if cr
- gr += cr_edges cr
- gr += describe_node(uuid, {href: {controller: 'container_requests',
- id: uuid},
- label: @pdata[uuid][:name],
- shape: 'oval'})
- # Search for child CRs
- if cr[:container_uuid]
- child_crs = ContainerRequest.where(requesting_container_uuid: cr[:container_uuid])
- child_crs.each do |child|
- gr += generate_provenance_edges(child[:uuid])
- gr += edge(uuid, child[:uuid], {label: 'child'})
- end
- end
- end
+ gr += cr_edges cr if cr
+ elsif rsc == Container
+ cr = @pdata[uuid]
+ gr += container_edges cr if cr
end
end
node [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
edge [fontsize=10,fontname=\"Helvetica,Arial,sans-serif\"];
"""
-
- if opts[:direction] == :bottom_up
- gr += "edge [dir=back];"
+ if ["LR", "RL"].include? opts[:direction]
+ gr += "rankdir=#{opts[:direction]};"
end
begin
end
end
end
+
+ def self.cr_input_pdhs cr
+ pdhs = []
+ input_obj = cr[:mounts].andand[:"/var/lib/cwl/cwl.input.json"].andand[:content] || cr[:mounts]
+ if input_obj
+ find_collections input_obj do |col_hash, col_uuid, key|
+ if col_hash
+ pdhs << col_hash
+ end
+ end
+ end
+ pdhs
+ end
end
projects / arvados.git / blobdiff