+ pips = {}
+ n = 1
+
+ pipelines.each do |p|
+ collections = []
+
+ p.components.each do |k, v|
+ j = v[:job] || next
+
+ uuid = j[:uuid].intern
+ provenance[uuid] = j
+ pips[uuid] = 0 unless pips[uuid] != nil
+ pips[uuid] |= n
+
+ collections << j[:output]
+ ProvenanceHelper::find_collections(j[:script_parameters]).each do |k|
+ collections << k
+ end
+
+ uuid = j[:script_version].intern
+ provenance[uuid] = {:uuid => uuid}
+ pips[uuid] = 0 unless pips[uuid] != nil
+ pips[uuid] |= n
+ end
+
+ Collection.where(uuid: collections.compact).each do |c|
+ uuid = c.uuid.intern
+ provenance[uuid] = c
+ pips[uuid] = 0 unless pips[uuid] != nil
+ pips[uuid] |= n
+ end
+
+ n = n << 1
+ end
+
+ return provenance, pips
+ end
+
+ def show
+ if @object.components.empty? and @object.pipeline_template_uuid
+ template = PipelineTemplate.find(@object.pipeline_template_uuid)
+ pipeline = {}
+ template.components.each do |component_name, component_props|
+ pipeline[component_name] = {}
+ component_props.each do |k, v|
+ if k == :script_parameters
+ pipeline[component_name][:script_parameters] = {}
+ v.each do |param_name, param_value|
+ if param_value.is_a? Hash
+ if param_value[:value]
+ pipeline[component_name][:script_parameters][param_name] = param_value[:value]
+ elsif param_value[:default]
+ pipeline[component_name][:script_parameters][param_name] = param_value[:default]
+ elsif param_value[:optional] != nil or param_value[:required] != nil or param_value[:dataclass] != nil
+ pipeline[component_name][:script_parameters][param_name] = ""
+ else
+ pipeline[component_name][:script_parameters][param_name] = param_value
+ end
+ else
+ pipeline[component_name][:script_parameters][param_name] = param_value
+ end
+ end
+ else
+ pipeline[component_name][k] = v
+ end
+ end
+ end
+ @object.components= pipeline
+ @object.save
+ end
+
+ @pipelines = [@object]
+
+ if params[:compare]
+ PipelineInstance.where(uuid: params[:compare]).each do |p|
+ @pipelines << p
+ end
+ end
+
+ provenance, pips = graph(@pipelines)
+
+ @prov_svg = ProvenanceHelper::create_provenance_graph provenance, "provenance_svg", {
+ :request => request,
+ :all_script_parameters => true,
+ :combine_jobs => :script_and_version,
+ :script_version_nodes => true,
+ :pips => pips }
+ super
+ end
+
+ def compare
+ @breadcrumb_page_name = 'compare'
+
+ @rows = [] # each is {name: S, components: [...]}
+
+ # Build a table: x=pipeline y=component
+ @objects.each_with_index do |pi, pi_index|
+ pipeline_jobs(pi).each do |component|
+ # Find a cell with the same name as this component but no
+ # entry for this pipeline
+ target_row = nil
+ @rows.each_with_index do |row, row_index|
+ if row[:name] == component[:name] and !row[:components][pi_index]
+ target_row = row
+ end
+ end
+ if !target_row
+ target_row = {name: component[:name], components: []}
+ @rows << target_row
+ end
+ target_row[:components][pi_index] = component