# Do not use this file for site configuration. Create application.yml
# instead (see application.yml.example).
+# Below is a sample setting for diagnostics testing.
+# Configure workbench URL as "arvados_workbench_url"
+# Configure test user tokens as "user_tokens".
+# At this time the tests need an "active" user token.
+# Also, configure the pipelines to be executed as "pipelines_to_test".
+# For each of the pipelines identified by the name of your choice
+# ("pipeline_1" and "pipeline_2" in this sample), provide the following:
+# template_uuid: is the uuid of the template to be executed
+# input_paths: an array of inputs for the pipeline. Use either a collection's "uuid"
+# or a file's "uuid/file_name" path in this array. If the pipeline does not require
+# any inputs, this can be omitted.
+# max_wait_seconds: max time in seconds to wait for the pipeline run to complete.
+# Default value of 30 seconds is used when this value is not provided.
+diagnostics:
+ arvados_workbench_url: https://localhost:3031
+ user_tokens:
+ active: eu33jurqntstmwo05h1jr3eblmi961e802703y6657s8zb14r
+ pipelines_to_test:
+ pipeline_1:
+ template_uuid: zzzzz-p5p6p-rxj8d71854j9idn
+ input_paths: [zzzzz-4zz18-nz98douzhaa3jh2]
+ max_wait_seconds: 10
+ pipeline_2:
+ template_uuid: zzzzz-p5p6p-1xbobfobk94ppbv
+ input_paths: [zzzzz-4zz18-nz98douzhaa3jh2, zzzzz-4zz18-gpw9o5wpcti3nib]
+
+# Below is a sample setting for performance testing.
+# Configure workbench URL as "arvados_workbench_url"
+# Configure test user token as "user_token".
+performance:
+ arvados_workbench_url: https://localhost:3031
+ user_token: eu33jurqntstmwo05h1jr3eblmi961e802703y6657s8zb14r
+
development:
cache_classes: false
eager_load: true
assets.debug: true
profiling_enabled: true
site_name: Arvados Workbench (dev)
- local_modified: <%= '-modified' if `git status -s` %>
+ local_modified: "<%= '-modified' if `git status -s` != '' %>"
+
+ # API server configuration
+ arvados_login_base: ~
+ arvados_v1_base: ~
+ arvados_insecure_https: ~
production:
force_ssl: true
data_import_dir: /data/arvados-workbench-upload/data
data_export_dir: /data/arvados-workbench-download/data
+ # API server configuration
+ arvados_login_base: ~
+ arvados_v1_base: ~
+ arvados_insecure_https: ~
+
site_name: Arvados Workbench
test:
action_controller.allow_forgery_protection: false
action_mailer.delivery_method: :test
active_support.deprecation: :stderr
- profiling_enabled: false
+ profiling_enabled: true
secret_token: <%= rand(2**256).to_s(36) %>
secret_key_base: <%= rand(2**256).to_s(36) %>
# server as a dependency. These settings should match the API
# server's Rails defaults. If you adjust those, change these
# settings in application.yml to match.
- arvados_login_base: https://localhost:3001/login
- arvados_v1_base: https://localhost:3001/arvados/v1
+ arvados_login_base: https://localhost:3000/login
+ arvados_v1_base: https://localhost:3000/arvados/v1
arvados_insecure_https: true
site_name: Workbench:test
arvados_insecure_https: true
activation_contact_link: mailto:info@arvados.org
arvados_docsite: http://doc.arvados.org
+ arvados_public_data_doc_url: http://arvados.org/projects/arvados/wiki/Public_Pipelines_and_Datasets
arvados_theme: default
show_user_agreement_inline: false
secret_token: ~
default_openid_prefix: https://www.google.com/accounts/o8/id
send_user_setup_notification_email: true
- # Set user_profile_form_fields to enable and configure the user profile page.
- # Default is set to false. A commented setting with full description is provided below.
+ # Scratch directory used by the remote repository browsing
+ # feature. If it doesn't exist, it (and any missing parents) will be
+ # created using mkdir_p.
+ repository_cache: <%= File.expand_path 'tmp/git', Rails.root %>
+
+ # Set user_profile_form_fields to enable and configure the user
+ # profile page. Default is set to false. A commented example with
+ # full description is provided below.
user_profile_form_fields: false
# Below is a sample setting of user_profile_form_fields config parameter.
user_profile_form_message: Welcome to Arvados. All <span style="color:red">required fields</span> must be completed before you can proceed.
# source_version
- source_version: "<%= `git log -n 1 --format=%h` %>"
+ source_version: "<%= `git log -n 1 --format=%h`.strip %>"
local_modified: false
# report notification to and from addresses
issue_reporter_email_to: arvados@example.com
support_email_address: arvados@example.com
- # Configuration for diagnostics testing. Use this to enable diagnostics testing for an env.
- diagnostics_testing_user_tokens: false
- diagnostics_testing_pipeline_fields: false
-
- # Below is a sample setting for diagnostics testing.
- # Configure test user tokens as "diagnostics_testing_user_tokens".
- # At this time the tests need an "active" user token.
- # Also, configure the pipelines to be executed as "diagnostics_testing_pipeline_fields".
- # For each of the pipelines identified by the name of your choice
- # ("tutorial pipeline" and "tutorial pipeline 2" in this sample):
- # template_uuid: is the uuid of the template to be executed
- # input_paths: an array of inputs for the pipeline. Use either a collection's "uuid"
- # or a file's "uuid/file_name" path in this array. If the pipeline does not require
- # any inputs, this can be omitted.
- # max_wait_seconds: max time in seconds to wait for the pipeline run to complete.
- # Default value of 30 seconds is used when this value is not provided.
- #diagnostics_testing_user_tokens:
- # active: eu33jurqntstmwo05h1jr3eblmi961e802703y6657s8zb14r
- #diagnostics_testing_pipeline_fields:
- # pipeline with one input:
- # template_uuid: zzzzz-p5p6p-rxj8d71854j9idn
- # input_paths: [qr1hi-4zz18-wu1s009qgnvgjc9]
- # max_wait_seconds: 100
- # pipeline with two inputs:
- # template_uuid: zzzzz-p5p6p-kfwus81of6y3ezs
- # input_paths: [2051b5d448fbd489ab00bbdedbee1ffa+91, e5e440c9c486df057e1bf6a7feac25be+77/alignment_summary_metrics.txt]
- # max_wait_seconds: 200
- # pipeline with no inputs:
- # template_uuid: zzzzz-p5p6p-kfwus81of6y3ezs
+ # generic issue email from
+ email_from: arvados@example.com
+
+ # Mimetypes of applications for which the view icon
+ # would be enabled in a collection's show page.
+ # It is sufficient to list only applications here.
+ # No need to list text and image types.
+ application_mimetypes_with_view_icon: [fasta, go, javascript, json, pdf, python, r, rtf, sam, sh, xml, xsl]
+
+ # the maximum number of bytes to load in the log viewer
+ log_viewer_max_bytes: 1000000
+
+ # Set anonymous_user_token to enable anonymous user access. You can get
+ # the token by running "bundle exec ./script/get_anonymous_user_token.rb"
+ # in the directory where your API server is running.
+ anonymous_user_token: false
+
+ # when anonymous_user_token is configured, show public projects page
+ enable_public_projects_page: true
+
+ # Ask Arvados API server to compress its response payloads.
+ api_response_compression: true
+
+ # ShellInABox service endpoint URL for a given VM. If false, do not
+ # offer web shell logins.
+ #
+ # E.g., using a path-based proxy server to forward connections to shell hosts:
+ # https://webshell.uuid_prefix.arvadosapi.com/%{hostname}
+ #
+ # E.g., using a name-based proxy server to forward connections to shell hosts:
+ # https://%{hostname}.webshell.uuid_prefix.arvadosapi.com/
+ shell_in_a_box_url: false
projects / arvados.git / blobdiff