Merge branch '3373-improve-gatk3-snv-pipeline' closes #3373

[arvados.git] / docker / jobs / Dockerfile

diff --git a/docker/jobs/Dockerfile b/docker/jobs/Dockerfile
index 28ef858b8f3cd4bf9cfecf2d8fdc7d637f19927e..1b493e3a30a88c68395dee7f52413be3f9f7b6db 100644 (file)
--- a/docker/jobs/Dockerfile
+++ b/docker/jobs/Dockerfile
@@ -4,16 +4,18 @@ MAINTAINER Brett Smith <brett@curoverse.com>
 # Install dependencies and set up system.
 # The FUSE packages help ensure that we can install the Python SDK (arv-mount).
 RUN /usr/bin/apt-get install -q -y python-dev python-llfuse python-pip \
-      libio-socket-ssl-perl libjson-perl liburi-perl libwww-perl \
+      libio-socket-ssl-perl libjson-perl liburi-perl libwww-perl dtrx \
       fuse libattr1-dev libfuse-dev && \
     /usr/sbin/adduser --disabled-password \
       --gecos 'Crunch execution user' crunch && \
-    /usr/bin/install -d -o crunch -g crunch -m 0700 /tmp/crunch-job && \
+    /usr/bin/install --directory --owner=crunch --group=crunch --mode=0700 /keep /tmp/crunch-src /tmp/crunch-job && \
     /bin/ln -s /usr/src/arvados /usr/local/src/arvados
 
 # Install Arvados packages.
-RUN find /usr/src/arvados/sdk -name '*.gem' -print0 | \
-      xargs -0rn 1 gem install && \
+RUN (find /usr/src/arvados/sdk -name '*.gem' -print0 | \
+      xargs -0rn 1 /usr/local/rvm/bin/rvm-exec default gem install) && \
+    cd /usr/src/arvados/services/fuse && \
+    python setup.py install && \
     cd /usr/src/arvados/sdk/python && \
     python setup.py install