"git.curoverse.com/arvados.git/sdk/go/arvadostest"
"git.curoverse.com/arvados.git/sdk/go/dispatch"
"io"
+ "io/ioutil"
"log"
"net/http"
"net/http/httptest"
return exec.Command("echo")
}
- container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo", "zzzzz-dz642-queuedcontainer") },
+ container := s.integrationTest(c,
+ func() *exec.Cmd { return exec.Command("echo", "zzzzz-dz642-queuedcontainer") },
[]string(nil),
func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
dispatcher.UpdateState(container.UUID, dispatch.Running)
}
func (s *TestSuite) TestIntegrationMissingFromSqueue(c *C) {
- container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo") }, []string{"sbatch", "--share", "--parsable",
+ container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo") }, []string{"sbatch", "--share",
fmt.Sprintf("--job-name=%s", "zzzzz-dz642-queuedcontainer"),
fmt.Sprintf("--mem-per-cpu=%d", 2862),
- fmt.Sprintf("--cpus-per-task=%d", 4),
- fmt.Sprintf("--priority=%d", 1)},
+ fmt.Sprintf("--cpus-per-task=%d", 4)},
func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
dispatcher.UpdateState(container.UUID, dispatch.Running)
time.Sleep(3 * time.Second)
}(squeueCmd)
squeueCmd = newSqueueCmd
- // There should be no queued containers now
+ // There should be one queued container
params := arvadosclient.Dict{
"filters": [][]string{{"state", "=", "Queued"}},
}
c.Check(err, IsNil)
c.Check(len(containers.Items), Equals, 1)
- echo := "echo"
- crunchRunCommand = &echo
+ theConfig.CrunchRunCommand = []string{"echo"}
doneProcessing := make(chan struct{})
dispatcher := dispatch.Dispatcher{
return container
}
-func (s *MockArvadosServerSuite) Test_APIErrorGettingContainers(c *C) {
+func (s *MockArvadosServerSuite) TestAPIErrorGettingContainers(c *C) {
apiStubResponses := make(map[string]arvadostest.StubResponse)
apiStubResponses["/arvados/v1/api_client_authorizations/current"] = arvadostest.StubResponse{200, `{"uuid":"` + arvadostest.Dispatch1AuthUUID + `"}`}
apiStubResponses["/arvados/v1/containers"] = arvadostest.StubResponse{500, string(`{}`)}
api := httptest.NewServer(&apiStub)
defer api.Close()
- arv := arvadosclient.ArvadosClient{
+ arv := &arvadosclient.ArvadosClient{
Scheme: "http",
ApiServer: api.URL[7:],
ApiToken: "abc123",
log.SetOutput(io.MultiWriter(buf, os.Stderr))
defer log.SetOutput(os.Stderr)
- crunchRunCommand = &crunchCmd
+ theConfig.CrunchRunCommand = []string{crunchCmd}
doneProcessing := make(chan struct{})
dispatcher := dispatch.Dispatcher{
c.Check(buf.String(), Matches, `(?ms).*`+expected+`.*`)
}
+
+func (s *MockArvadosServerSuite) TestNoSuchConfigFile(c *C) {
+ var config Config
+ err := readConfig(&config, "/nosuchdir89j7879/8hjwr7ojgyy7")
+ c.Assert(err, NotNil)
+}
+
+func (s *MockArvadosServerSuite) TestBadSbatchArgsConfig(c *C) {
+ var config Config
+
+ tmpfile, err := ioutil.TempFile(os.TempDir(), "config")
+ c.Check(err, IsNil)
+ defer os.Remove(tmpfile.Name())
+
+ _, err = tmpfile.Write([]byte(`{"SbatchArguments": "oops this is not a string array"}`))
+ c.Check(err, IsNil)
+
+ err = readConfig(&config, tmpfile.Name())
+ c.Assert(err, NotNil)
+}
+
+func (s *MockArvadosServerSuite) TestNoSuchArgInConfigIgnored(c *C) {
+ var config Config
+
+ tmpfile, err := ioutil.TempFile(os.TempDir(), "config")
+ c.Check(err, IsNil)
+ defer os.Remove(tmpfile.Name())
+
+ _, err = tmpfile.Write([]byte(`{"NoSuchArg": "Nobody loves me, not one tiny hunk."}`))
+ c.Check(err, IsNil)
+
+ err = readConfig(&config, tmpfile.Name())
+ c.Assert(err, IsNil)
+ c.Check(0, Equals, len(config.SbatchArguments))
+}
+
+func (s *MockArvadosServerSuite) TestReadConfig(c *C) {
+ var config Config
+
+ tmpfile, err := ioutil.TempFile(os.TempDir(), "config")
+ c.Check(err, IsNil)
+ defer os.Remove(tmpfile.Name())
+
+ args := []string{"--arg1=v1", "--arg2", "--arg3=v3"}
+ argsS := `{"SbatchArguments": ["--arg1=v1", "--arg2", "--arg3=v3"]}`
+ _, err = tmpfile.Write([]byte(argsS))
+ c.Check(err, IsNil)
+
+ err = readConfig(&config, tmpfile.Name())
+ c.Assert(err, IsNil)
+ c.Check(3, Equals, len(config.SbatchArguments))
+ c.Check(args, DeepEquals, config.SbatchArguments)
+}
+
+func (s *MockArvadosServerSuite) TestSbatchFuncWithNoConfigArgs(c *C) {
+ testSbatchFuncWithArgs(c, nil)
+}
+
+func (s *MockArvadosServerSuite) TestSbatchFuncWithEmptyConfigArgs(c *C) {
+ testSbatchFuncWithArgs(c, []string{})
+}
+
+func (s *MockArvadosServerSuite) TestSbatchFuncWithConfigArgs(c *C) {
+ testSbatchFuncWithArgs(c, []string{"--arg1=v1", "--arg2"})
+}
+
+func testSbatchFuncWithArgs(c *C, args []string) {
+ theConfig.SbatchArguments = append(theConfig.SbatchArguments, args...)
+
+ container := arvados.Container{UUID: "123", RuntimeConstraints: arvados.RuntimeConstraints{RAM: 250000000, VCPUs: 2}}
+ sbatchCmd := sbatchFunc(container)
+
+ var expected []string
+ expected = append(expected, "sbatch", "--share")
+ expected = append(expected, theConfig.SbatchArguments...)
+ expected = append(expected, "--job-name=123", "--mem-per-cpu=120", "--cpus-per-task=2")
+
+ c.Check(sbatchCmd.Args, DeepEquals, expected)
+}
+
+func (s *MockArvadosServerSuite) TestSbatchPartition(c *C) {
+ theConfig.SbatchArguments = nil
+ container := arvados.Container{UUID: "123", RuntimeConstraints: arvados.RuntimeConstraints{RAM: 250000000, VCPUs: 1}, SchedulingParameters: arvados.SchedulingParameters{Partitions: []string{"blurb", "b2"}}}
+ sbatchCmd := sbatchFunc(container)
+
+ var expected []string
+ expected = append(expected, "sbatch", "--share")
+ expected = append(expected, "--job-name=123", "--mem-per-cpu=239", "--cpus-per-task=1", "--partition=blurb,b2")
+
+ c.Check(sbatchCmd.Args, DeepEquals, expected)
+}