18888: Ensure that default File/Directory references are normalized

[arvados.git] / sdk / cwl / arvados_cwl / runner.py

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index e5a81cdc73fe77238b743705c1dd4c8847240d18..7d4310b0e0ce94b9430ded7f60ca04416e2964b9 100644 (file)
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -358,6 +358,7 @@ def upload_dependencies(arvrunner, name, document_loader,
             if "location" not in f and "path" in f:
                 f["location"] = f["path"]
                 del f["path"]
+            normalizeFilesDirs(f)
             optional_deps.append(f)
         visit_class(obj["default"], ("File", "Directory"), defaults_are_optional)