- user/getting_started/community.html.textile.liquid
- Walkthough:
- user/tutorials/wgs-tutorial.html.textile.liquid
- - Run a workflow using Workbench:
+ - Using Workbench:
- user/getting_started/workbench.html.textile.liquid
- user/tutorials/tutorial-workflow-workbench.html.textile.liquid
+ - user/topics/workbench-migration.html.textile.liquid
- Working at the Command Line:
- user/getting_started/setup-cli.html.textile.liquid
- user/reference/api-tokens.html.textile.liquid
- user/topics/storage-classes.html.textile.liquid
- Data Analysis with Workflows:
- user/cwl/arvados-vscode-training.html.md.liquid
+ - user/cwl/rnaseq-cwl-training.html.textile.liquid
- user/cwl/cwl-runner.html.textile.liquid
- user/cwl/cwl-run-options.html.textile.liquid
- user/tutorials/writing-cwl-workflow.html.textile.liquid
- sdk/index.html.textile.liquid
- Python:
- sdk/python/sdk-python.html.textile.liquid
- - sdk/python/example.html.textile.liquid
+ - sdk/python/api-client.html.textile.liquid
+ - sdk/python/cookbook.html.textile.liquid
- sdk/python/python.html.textile.liquid
- sdk/python/arvados-fuse.html.textile.liquid
- sdk/python/arvados-cwl-runner.html.textile.liquid
- - sdk/python/cookbook.html.textile.liquid
- sdk/python/events.html.textile.liquid
- CLI:
- sdk/cli/install.html.textile.liquid
- sdk/cli/index.html.textile.liquid
- sdk/cli/reference.html.textile.liquid
- sdk/cli/subcommands.html.textile.liquid
+ - sdk/cli/project-management.html.textile.liquid
- Go:
- sdk/go/index.html.textile.liquid
- sdk/go/example.html.textile.liquid
- sdk/java-v2/index.html.textile.liquid
- sdk/java-v2/example.html.textile.liquid
- sdk/java-v2/javadoc.html.textile.liquid
- - Java v1:
- - sdk/java/index.html.textile.liquid
- - sdk/java/example.html.textile.liquid
- - Perl:
- - sdk/perl/index.html.textile.liquid
- - sdk/perl/example.html.textile.liquid
api:
- Concepts:
- api/index.html.textile.liquid
- api/keep-s3.html.textile.liquid
- api/keep-web-urls.html.textile.liquid
- api/projects.html.textile.liquid
+ - api/properties.html.textile.liquid
- api/methods/collections.html.textile.liquid
- api/methods/repositories.html.textile.liquid
- Container engine:
- Computation with Crunch:
- api/execution.html.textile.liquid
- architecture/dispatchcloud.html.textile.liquid
+ - architecture/hpc.html.textile.liquid
- architecture/singularity.html.textile.liquid
- Other:
- api/permission-model.html.textile.liquid
- Users and Groups:
- admin/user-management.html.textile.liquid
- admin/user-management-cli.html.textile.liquid
+ - admin/group-management.html.textile.liquid
- admin/reassign-ownership.html.textile.liquid
- admin/link-accounts.html.textile.liquid
- - admin/group-management.html.textile.liquid
- admin/federation.html.textile.liquid
- admin/merge-remote-account.html.textile.liquid
- admin/migrating-providers.html.textile.liquid
- - user/topics/arvados-sync-groups.html.textile.liquid
+ - user/topics/arvados-sync-external-sources.html.textile.liquid
- admin/scoped-tokens.html.textile.liquid
- admin/token-expiration-policy.html.textile.liquid
- - admin/user-activity.html.textile.liquid
- Monitoring:
- admin/logging.html.textile.liquid
- admin/metrics.html.textile.liquid
- admin/health-checks.html.textile.liquid
+ - admin/diagnostics.html.textile.liquid
- admin/management-token.html.textile.liquid
+ - admin/user-activity.html.textile.liquid
- Data Management:
- admin/collection-versioning.html.textile.liquid
- admin/collection-managed-properties.html.textile.liquid
- install/index.html.textile.liquid
- Docker quick start:
- install/arvbox.html.textile.liquid
- - Installation with Salt:
- - install/salt.html.textile.liquid
- - install/salt-vagrant.html.textile.liquid
+ - Arvados Installer:
- install/salt-single-host.html.textile.liquid
- install/salt-multi-host.html.textile.liquid
- - Arvados on Kubernetes:
- - install/arvados-on-kubernetes.html.textile.liquid
- - install/arvados-on-kubernetes-minikube.html.textile.liquid
- - install/arvados-on-kubernetes-GKE.html.textile.liquid
+# - Arvados on Kubernetes:
+# - install/arvados-on-kubernetes.html.textile.liquid
+# - install/arvados-on-kubernetes-minikube.html.textile.liquid
+# - install/arvados-on-kubernetes-GKE.html.textile.liquid
- Manual installation:
- install/install-manual-prerequisites.html.textile.liquid
- install/packages.html.textile.liquid
- - admin/upgrading.html.textile.liquid
- Configuration:
- install/config.html.textile.liquid
- - admin/config-migration.html.textile.liquid
+ - admin/config-urls.html.textile.liquid
- admin/config.html.textile.liquid
+ - Maintenance and upgrading:
+ - admin/upgrading.html.textile.liquid
+ - admin/maintenance-and-upgrading.html.textile.liquid
- Core:
- install/install-api-server.html.textile.liquid
+ - install/diagnostics.html.textile.liquid
- Keep:
- install/install-keepstore.html.textile.liquid
- install/configure-fs-storage.html.textile.liquid
- install/install-ws.html.textile.liquid
- install/install-workbench-app.html.textile.liquid
- install/install-workbench2-app.html.textile.liquid
- - install/install-composer.html.textile.liquid
+# - install/install-composer.html.textile.liquid
- Additional services:
- install/install-shell-server.html.textile.liquid
- install/install-webshell.html.textile.liquid
- install/install-arv-git-httpd.html.textile.liquid
- - Containers API (all):
- - install/install-jobs-image.html.textile.liquid
+# - Containers API (all):
+# - install/install-jobs-image.html.textile.liquid
- Containers API (cloud):
- install/crunch2-cloud/install-compute-node.html.textile.liquid
- install/crunch2-cloud/install-dispatch-cloud.html.textile.liquid