-# Set up the Rails database. This has to be done in a script so that
-# postgres can run in the background while running rake db:setup.
-ENV RAILS_ENV production
-ADD database.yml /usr/src/arvados/services/api/config/database.yml
-ADD config_rake.sh /tmp/config_rake.sh
-RUN /tmp/config_rake.sh
+# Install a token for root
+RUN mkdir -p /root/.config/arvados; echo "ARVADOS_API_HOST=api" >> /root/.config/arvados/settings.conf && echo "ARVADOS_API_HOST_INSECURE=yes" >> /root/.config/arvados/settings.conf && echo "ARVADOS_API_TOKEN=$(cat /tmp/superuser_token)" >> /root/.config/arvados/settings.conf && chmod 600 /root/.config/arvados/settings.conf
+
+# Set up directory for job commit repo
+RUN mkdir -p /var/lib/arvados
+# Add crunch user
+RUN addgroup --gid 4005 crunch && mkdir /home/crunch && useradd --uid 4005 --gid 4005 crunch && chown crunch:crunch /home/crunch
+
+# Create keep and compute node objects
+ADD keep_server_0.json /root/
+ADD keep_server_1.json /root/
+
+# Set up update-gitolite.rb
+RUN mkdir /usr/local/arvados/config -p
+ADD generated/arvados-clients.yml /usr/local/arvados/config/
+ADD update-gitolite.rb /usr/local/arvados/
+
+# Supervisor.
+ADD supervisor.conf /etc/supervisor/conf.d/arvados.conf
+ADD ssh.sh /usr/local/bin/ssh.sh
+ADD generated/setup.sh /usr/local/bin/setup.sh
+ADD generated/setup-gitolite.sh /usr/local/bin/setup-gitolite.sh
+ADD crunch-dispatch-run.sh /usr/local/bin/crunch-dispatch-run.sh
+ADD apache2_foreground.sh /etc/apache2/foreground.sh