10401: Only upload file:// identifiers.

[arvados.git] / sdk / cwl / arvados_cwl / arvcontainer.py

diff --git a/sdk/cwl/arvados_cwl/arvcontainer.py b/sdk/cwl/arvados_cwl/arvcontainer.py
index 3090936121daf32d9ffa61744d1f5b932b73590a..5c697b37507ac81d583d8c3f721ef2b45d4c747f 100644 (file)
--- a/sdk/cwl/arvados_cwl/arvcontainer.py
+++ b/sdk/cwl/arvados_cwl/arvcontainer.py
@@ -53,7 +53,7 @@ class ArvadosContainer(object):
 
         dirs = set()
         for f in self.pathmapper.files():
-            pdh, p, tp = self.pathmapper.mapper(f)
+            pdh, p, tp, stg = self.pathmapper.mapper(f)
             if tp == "Directory" and '/' not in pdh:
                 mounts[p] = {
                     "kind": "collection",
@@ -62,7 +62,7 @@ class ArvadosContainer(object):
                 dirs.add(pdh)
 
         for f in self.pathmapper.files():
-            res, p, tp = self.pathmapper.mapper(f)
+            res, p, tp, stg = self.pathmapper.mapper(f)
             if res.startswith("keep:"):
                 res = res[5:]
             elif res.startswith("/keep/"):