var Command cmd.Handler = &installCommand{}
-const devtestDatabasePassword = "insecure_arvados_test"
+const goversion = "1.17.7"
+
+const (
+ devtestDatabasePassword = "insecure_arvados_test"
+ workbench2version = "5e805cf2209d3afe42699e4658d8a12e50bcd5a4"
+)
type installCommand struct {
ClusterType string
flags.StringVar(&inst.SourcePath, "source", "/arvados", "source tree location (required for -type=package)")
flags.StringVar(&inst.PackageVersion, "package-version", "0.0.0", "version string to embed in executable files")
flags.BoolVar(&inst.EatMyData, "eatmydata", false, "use eatmydata to speed up install")
- err = flags.Parse(args)
- if err == flag.ErrHelp {
- err = nil
- return 0
- } else if err != nil {
- return 2
+
+ if ok, code := cmd.ParseFlags(flags, prog, args, "", stderr); !ok {
+ return code
} else if *versionFlag {
return cmd.Version.RunCommand(prog, args, stdin, stdout, stderr)
- } else if len(flags.Args()) > 0 {
- err = fmt.Errorf("unrecognized command line arguments: %v", flags.Args())
- return 2
}
var dev, test, prod, pkg bool
"r-cran-roxygen2",
"r-cran-xml",
"sudo",
+ "uuid-dev",
"wget",
"xvfb",
)
+ if dev || test {
+ pkgs = append(pkgs,
+ "squashfs-tools", // for singularity
+ )
+ }
switch {
case osv.Debian && osv.Major >= 10:
pkgs = append(pkgs, "libcurl4")
return 1
}
}
- rubyversion := "2.5.7"
+ rubyversion := "2.7.2"
+ rubymajorversion := rubyversion[:strings.LastIndex(rubyversion, ".")]
if haverubyversion, err := exec.Command("/var/lib/arvados/bin/ruby", "-v").CombinedOutput(); err == nil && bytes.HasPrefix(haverubyversion, []byte("ruby "+rubyversion)) {
logger.Print("ruby " + rubyversion + " already installed")
} else {
err = inst.runBash(`
tmp="$(mktemp -d)"
trap 'rm -r "${tmp}"' ERR EXIT
-wget --progress=dot:giga -O- https://cache.ruby-lang.org/pub/ruby/2.5/ruby-`+rubyversion+`.tar.gz | tar -C "${tmp}" -xzf -
+wget --progress=dot:giga -O- https://cache.ruby-lang.org/pub/ruby/`+rubymajorversion+`/ruby-`+rubyversion+`.tar.gz | tar -C "${tmp}" -xzf -
cd "${tmp}/ruby-`+rubyversion+`"
./configure --disable-install-static-library --enable-shared --disable-install-doc --prefix /var/lib/arvados
make -j8
make install
-/var/lib/arvados/bin/gem install bundler --no-ri --no-rdoc
-# "gem update --system" can be removed when we use ruby ≥2.6.3: https://bundler.io/blog/2019/05/14/solutions-for-cant-find-gem-bundler-with-executable-bundle.html
-/var/lib/arvados/bin/gem update --system --no-ri --no-rdoc
+/var/lib/arvados/bin/gem install bundler --no-document
`, stdout, stderr)
if err != nil {
return 1
}
if !prod {
- goversion := "1.14"
if havegoversion, err := exec.Command("/usr/local/bin/go", "version").CombinedOutput(); err == nil && bytes.HasPrefix(havegoversion, []byte("go version go"+goversion+" ")) {
logger.Print("go " + goversion + " already installed")
} else {
err = inst.runBash(`
cd /tmp
+rm -rf /var/lib/arvados/go/
wget --progress=dot:giga -O- https://storage.googleapis.com/golang/go`+goversion+`.linux-amd64.tar.gz | tar -C /var/lib/arvados -xzf -
-ln -sf /var/lib/arvados/go/bin/* /usr/local/bin/
+ln -sfv /var/lib/arvados/go/bin/* /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
} else {
err = inst.runBash(`
PJS=phantomjs-`+pjsversion+`-linux-x86_64
-wget --progress=dot:giga -O- https://bitbucket.org/ariya/phantomjs/downloads/$PJS.tar.bz2 | tar -C /var/lib/arvados -xjf -
-ln -sf /var/lib/arvados/$PJS/bin/phantomjs /usr/local/bin/
+wget --progress=dot:giga -O- https://cache.arvados.org/$PJS.tar.bz2 | tar -C /var/lib/arvados -xjf -
+ln -sfv /var/lib/arvados/$PJS/bin/phantomjs /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
err = inst.runBash(`
GD=v`+geckoversion+`
wget --progress=dot:giga -O- https://github.com/mozilla/geckodriver/releases/download/$GD/geckodriver-$GD-linux64.tar.gz | tar -C /var/lib/arvados/bin -xzf - geckodriver
-ln -sf /var/lib/arvados/bin/geckodriver /usr/local/bin/
-`, stdout, stderr)
- if err != nil {
- return 1
- }
- }
-
- nodejsversion := "v8.15.1"
- if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == nodejsversion+"\n" {
- logger.Print("nodejs " + nodejsversion + " already installed")
- } else {
- err = inst.runBash(`
-NJS=`+nodejsversion+`
-wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
-ln -sf /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
+ln -sfv /var/lib/arvados/bin/geckodriver /usr/local/bin/
`, stdout, stderr)
if err != nil {
return 1
trap "rm ${zip}" ERR
wget --progress=dot:giga -O${zip} https://services.gradle.org/distributions/gradle-${G}-bin.zip
unzip -o -d /var/lib/arvados ${zip}
-ln -sf /var/lib/arvados/gradle-${G}/bin/gradle /usr/local/bin/
+ln -sfv /var/lib/arvados/gradle-${G}/bin/gradle /usr/local/bin/
rm ${zip}
`, stdout, stderr)
if err != nil {
}
}
+ singularityversion := "3.7.4"
+ if havesingularityversion, err := exec.Command("/var/lib/arvados/bin/singularity", "--version").CombinedOutput(); err == nil && strings.Contains(string(havesingularityversion), singularityversion) {
+ logger.Print("singularity " + singularityversion + " already installed")
+ } else if dev || test {
+ err = inst.runBash(`
+S=`+singularityversion+`
+tmp=/var/lib/arvados/tmp/singularity
+trap "rm -r ${tmp}" ERR EXIT
+cd /var/lib/arvados/tmp
+git clone https://github.com/sylabs/singularity
+cd singularity
+git checkout v${S}
+./mconfig --prefix=/var/lib/arvados
+make -C ./builddir
+make -C ./builddir install
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
// The entry in /etc/locale.gen is "en_US.UTF-8"; once
// it's installed, locale -a reports it as
// "en_US.utf8".
}
}
+ if !prod {
+ nodejsversion := "v12.22.2"
+ if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == nodejsversion+"\n" {
+ logger.Print("nodejs " + nodejsversion + " already installed")
+ } else {
+ err = inst.runBash(`
+NJS=`+nodejsversion+`
+wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
+ln -sfv /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ if haveyarnversion, err := exec.Command("/usr/local/bin/yarn", "--version").CombinedOutput(); err == nil && len(haveyarnversion) > 0 {
+ logger.Print("yarn " + strings.TrimSpace(string(haveyarnversion)) + " already installed")
+ } else {
+ err = inst.runBash(`
+npm install -g yarn
+ln -sfv /var/lib/arvados/node-`+nodejsversion+`-linux-x64/bin/{yarn,yarnpkg} /usr/local/bin/
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ if havewb2version, err := exec.Command("git", "--git-dir=/var/lib/arvados/arvados-workbench2/.git", "log", "-n1", "--format=%H").CombinedOutput(); err == nil && string(havewb2version) == workbench2version+"\n" {
+ logger.Print("workbench2 repo is already at " + workbench2version)
+ } else {
+ err = inst.runBash(`
+V=`+workbench2version+`
+cd /var/lib/arvados
+if [[ ! -e arvados-workbench2 ]]; then
+ git clone https://git.arvados.org/arvados-workbench2.git
+ cd arvados-workbench2
+ git checkout $V
+else
+ cd arvados-workbench2
+ if ! git checkout $V; then
+ git fetch
+ git checkout $V
+ fi
+fi
+rm -rf build
+`, stdout, stderr)
+ if err != nil {
+ return 1
+ }
+ }
+
+ if err = inst.runBash(`
+cd /var/lib/arvados/arvados-workbench2
+yarn install --non-interactive
+`, stdout, stderr); err != nil {
+ return 1
+ }
+ }
+
if prod || pkg {
+ // Install workbench2 app to /var/lib/arvados/workbench2/
+ if err = inst.runBash(`
+cd /var/lib/arvados/arvados-workbench2
+yarn build
+rsync -a --delete-after build/ /var/lib/arvados/workbench2/
+`, stdout, stderr); err != nil {
+ return 1
+ }
+
// Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
for dstdir, srcdir := range map[string]string{
"railsapi": "services/api",
"--exclude", "/log",
"--exclude", "/tmp",
"--exclude", "/vendor",
+ "--exclude", "/config/environments",
"./", "/var/lib/arvados/"+dstdir+"/")
cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
cmd.Stdout = stdout
{"mkdir", "-p", "log", "tmp", ".bundle", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger"},
{"touch", "log/production.log"},
{"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger", "log", "tmp", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
- {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:1.16.6", "bundler:1.17.3", "bundler:2.0.2"},
+ {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:2.2.19"},
{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem"},
{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
{"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
projects / arvados.git / blobdiff