19070: Add integration test for copying dependencies

[arvados.git] / sdk / cwl / tests / arvados-tests.sh

diff --git a/sdk/cwl/tests/arvados-tests.sh b/sdk/cwl/tests/arvados-tests.sh
index 2c03812ed3e38e339f1323abd25e2bc4ec61c8dc..1bbaa505e9b4790feffae85b7e44450e78180bc7 100755 (executable)
--- a/sdk/cwl/tests/arvados-tests.sh
+++ b/sdk/cwl/tests/arvados-tests.sh
@@ -1,5 +1,32 @@
 #!/bin/sh
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+set -e
+
 if ! arv-get d7514270f356df848477718d58308cc4+94 > /dev/null ; then
-    arv-put --portable-data-hash testdir
+    arv-put --portable-data-hash testdir/*
 fi
-exec cwltest --test arvados-tests.yml --tool $PWD/runner.sh $@
+if ! arv-get f225e6259bdd63bc7240599648dde9f1+97 > /dev/null ; then
+    arv-put --portable-data-hash hg19/*
+fi
+if ! arv-get 4d8a70b1e63b2aad6984e40e338e2373+69 > /dev/null ; then
+    arv-put --portable-data-hash secondaryFiles/hello.txt*
+fi
+if ! arv-get 20850f01122e860fb878758ac1320877+71 > /dev/null ; then
+    arv-put --portable-data-hash samples/sample1_S01_R1_001.fastq.gz
+fi
+
+# Test for #18888
+# This is a standalone test because the bug was observed with this
+# command line and was thought to be due to command line handling.
+arvados-cwl-runner 18888-download_def.cwl --scripts scripts/
+
+# Test for #19070
+# The most effective way to test this seemed to be to write an
+# integration test to check for the expected behavior.
+python test_copy_deps.py
+
+# Run integration tests
+exec cwltest --test arvados-tests.yml --tool arvados-cwl-runner $@ -- --disable-reuse --compute-checksum --api=containers