projects
/
arvados.git
/ blobdiff
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Merge branch '13547-respect-insecure-flag-when-talking-ssl-to-keep'
[arvados.git]
/
doc
/
_includes
/
_tutorial_bwa_sortsam_pipeline.liquid
diff --git
a/doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
b/doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
index 413e51f9c057565647f829506506b4fd58aa7c8d..3b39403488ff3651e732a5d77358f7239f4b5c45 100644
(file)
--- a/
doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
+++ b/
doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
@@
-1,3
+1,9
@@
+{% comment %}
+Copyright (C) The Arvados Authors. All rights reserved.
+
+SPDX-License-Identifier: CC-BY-SA-3.0
+{% endcomment %}
+
{
"name": "Tutorial align using bwa mem and SortSam",
"components": {
{
"name": "Tutorial align using bwa mem and SortSam",
"components": {
@@
-12,7
+18,7
@@
"-t",
"$(node.cores)",
"-R",
"-t",
"$(node.cores)",
"-R",
- "@RG\\
tID:group_id\\tPL:illumina
\\tSM:sample_id",
+ "@RG\\
\tID:group_id\\\tPL:illumina\
\\tSM:sample_id",
"$(glob $(dir $(reference_collection))/*.fasta)",
"$(glob $(dir $(sample))/*_1.fastq)",
"$(glob $(dir $(sample))/*_2.fastq)"
"$(glob $(dir $(reference_collection))/*.fasta)",
"$(glob $(dir $(sample))/*_1.fastq)",
"$(glob $(dir $(sample))/*_2.fastq)"