import arvados_cwl
from cwltool.pathmapper import MapperEnt
+from .mock_discovery import get_rootDesc
from arvados_cwl.pathmapper import ArvPathMapper
c.fn = fnPattern % (pdh, os.path.basename(c.fn))
class TestPathmap(unittest.TestCase):
+ def setUp(self):
+ self.api = mock.MagicMock()
+ self.api._rootDesc = get_rootDesc()
+
def test_keepref(self):
"""Test direct keep references."""
- arvrunner = arvados_cwl.ArvCwlRunner(mock.MagicMock())
+ arvrunner = arvados_cwl.ArvCwlRunner(self.api)
p = ArvPathMapper(arvrunner, [{
"class": "File",
def test_upload(self, upl):
"""Test pathmapper uploading files."""
- arvrunner = arvados_cwl.ArvCwlRunner(mock.MagicMock())
+ arvrunner = arvados_cwl.ArvCwlRunner(self.api)
upl.side_effect = upload_mock
def test_prev_uploaded(self, upl):
"""Test pathmapper handling previously uploaded files."""
- arvrunner = arvados_cwl.ArvCwlRunner(mock.MagicMock())
+ arvrunner = arvados_cwl.ArvCwlRunner(self.api)
arvrunner.add_uploaded('tests/hw.py', MapperEnt(resolved='keep:99999999999999999999999999999991+99/hw.py', target='', type='File'))
upl.side_effect = upload_mock
@mock.patch("arvados.commands.run.statfile")
def test_statfile(self, statfile, upl):
"""Test pathmapper handling ArvFile references."""
- arvrunner = arvados_cwl.ArvCwlRunner(mock.MagicMock())
+ arvrunner = arvados_cwl.ArvCwlRunner(self.api)
# An ArvFile object returned from arvados.commands.run.statfile means the file is located on a
# keep mount, so we can construct a direct reference directly without upload.