useruuid = self.api.users().current().execute()["uuid"]
self.project_uuid = kwargs.get("project_uuid") if kwargs.get("project_uuid") else useruuid
self.pipeline = None
+ self.fs_access = CollectionFsAccess(kwargs["basedir"], api_client=self.api)
if kwargs.get("create_template"):
tmpl = RunnerTemplate(self, tool, job_order, kwargs.get("enable_reuse"))
self.debug = kwargs.get("debug")
self.ignore_docker_for_reuse = kwargs.get("ignore_docker_for_reuse")
- self.fs_access = CollectionFsAccess(kwargs["basedir"])
kwargs["fs_access"] = self.fs_access
kwargs["enable_reuse"] = kwargs.get("enable_reuse")
+ kwargs["use_container"] = True
+ kwargs["tmpdir_prefix"] = "tmp"
+ kwargs["on_error"] = "continue"
if self.work_api == "containers":
kwargs["outdir"] = "/var/spool/cwl"
if self.final_status == "UnsupportedRequirement":
raise UnsupportedRequirement("Check log for details.")
+ if self.final_status != "success":
+ raise WorkflowException("Workflow failed.")
+
if self.final_output is None:
raise WorkflowException("Workflow did not return a result.")