9701: Merge branch '9463-change-arvput-use-collection-class' into 9701-collection...

[arvados.git] / doc / user / tutorials / tutorial-pipeline-workbench.html.textile.liquid

diff --git a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
index f9522fbef01658f68b20493516b823c2e2d3611f..fac573aca9bdbc30a1f93b8f75e4af10e0818cfe 100644 (file)
--- a/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
@@ -18,13 +18,13 @@ h3. Steps
 
 # Start from the *Workbench Dashboard*.  You can access the Dashboard by clicking on *<i class="fa fa-lg fa-fw fa-dashboard"></i> Dashboard* in the upper left corner of any Workbench page.
 # Click on the <span class="btn btn-sm btn-primary"><i class="fa fa-fw fa-gear"></i> Run a pipeline...</span> button.  This will open a dialog box titled *Choose a pipeline to run*.
-# Click to open the *All projects <span class="caret"></span>* menu.  Under the *Projects shared with me* header, select *<i class="fa fa-fw fa-share-alt"></i> Arvados Tutorial*.
+# In the search box, type in *Tutorial align using bwa mem*.
 # Select *<i class="fa fa-fw fa-gear"></i> Tutorial align using bwa mem* and click the <span class="btn btn-sm btn-primary" >Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span> button.  This will create a new pipeline in your *Home* project and will open it. You can now supply the inputs for the pipeline.
 # The first input parameter to the pipeline is *"reference_collection" parameter for run-command script in bwa-mem component*.  Click the <span class="btn btn-sm btn-primary">Choose</span> button beneath that header.  This will open a dialog box titled *Choose a dataset for "reference_collection" parameter for run-command script in bwa-mem component*.
-# Once again, open the *All projects <span class="caret"></span>* menu and select *<i class="fa fa-fw fa-share-alt"></i> Arvados Tutorial*.  Select *<i class="fa fa-fw fa-archive"></i> Tutorial chromosome 19 reference* and click the <span class="btn btn-sm btn-primary" >OK</span> button.
+# Open the *Home <span class="caret"></span>* menu and select *All Projects*. Search for and select *<i class="fa fa-fw fa-archive"></i> Tutorial chromosome 19 reference* and click the <span class="btn btn-sm btn-primary" >OK</span> button.
 # Repeat the previous two steps to set the *"sample" parameter for run-command script in bwa-mem component* parameter to *<i class="fa fa-fw fa-archive"></i> Tutorial sample exome*.
 # Click on the <span class="btn btn-sm btn-primary" >Run <i class="fa fa-fw fa-play"></i></span> button.  The page updates to show you that the pipeline has been submitted to run on the Arvados cluster.
-# After the pipeline starts running, you can track the progress by watching log messages from jobs.  This page refreshes automatically.  You will see a <span class="label label-success">complete</span> label under the *job* column when the pipeline completes successfully.
+# After the pipeline starts running, you can track the progress by watching log messages from jobs.  This page refreshes automatically.  You will see a <span class="label label-success">complete</span> label when the pipeline completes successfully.
 # Click on the *Output* link to see the results of the job.  This will load a new page listing the output files from this pipeline.  You'll see the output SAM file from the alignment tool under the *Files* tab.
 # Click on the <span class="btn btn-sm btn-info"><i class="fa fa-download"></i></span> download button to the right of the SAM file to download your results.