15306: Adds testing on collections#show that expose the bug.
[arvados.git] / build / run-library.sh
index 79d05071b155a03f7e821f30c9e01da3006e8d1c..1aa3e3cfd1147ebe15b0c041637a055b015f3c93 100755 (executable)
@@ -11,7 +11,7 @@
 LICENSE_PACKAGE_TS=20151208015500
 
 if [[ -z "$ARVADOS_BUILDING_VERSION" ]]; then
-    RAILS_PACKAGE_ITERATION=8
+    RAILS_PACKAGE_ITERATION=1
 else
     RAILS_PACKAGE_ITERATION="$ARVADOS_BUILDING_ITERATION"
 fi
@@ -161,7 +161,7 @@ package_go_binary() {
     fi
     switches+=("$WORKSPACE/${license_file}=/usr/share/doc/$prog/${license_file}")
 
-    fpm_build "$GOPATH/bin/${basename}=/usr/bin/${prog}" "${prog}" 'Curoverse, Inc.' dir "${version}" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=${description}" "${switches[@]}"
+    fpm_build "$GOPATH/bin/${basename}=/usr/bin/${prog}" "${prog}" dir "${version}" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=${description}" "${switches[@]}"
 }
 
 default_iteration() {
@@ -261,37 +261,41 @@ test_package_presence() {
     # Get the list of packages from the repos
 
     if [[ "$FORMAT" == "deb" ]]; then
-      debian_distros="jessie precise stretch trusty wheezy xenial bionic"
-
-      for D in ${debian_distros}; do
-        if [ ${pkgname:0:3} = "lib" ]; then
-          repo_subdir=${pkgname:0:4}
-        else
-          repo_subdir=${pkgname:0:1}
-        fi
+      declare -A dd
+      dd[debian8]=jessie
+      dd[debian9]=stretch
+      dd[debian10]=buster
+      dd[ubuntu1404]=trusty
+      dd[ubuntu1604]=xenial
+      dd[ubuntu1804]=bionic
+      D=${dd[$TARGET]}
+      if [ ${pkgname:0:3} = "lib" ]; then
+        repo_subdir=${pkgname:0:4}
+      else
+        repo_subdir=${pkgname:0:1}
+      fi
 
-        repo_pkg_list=$(curl -s -o - http://apt.arvados.org/pool/${D}/main/${repo_subdir}/)
-        echo ${repo_pkg_list} |grep -q ${complete_pkgname}
-        if [ $? -eq 0 ] ; then
-          echo "Package $complete_pkgname exists, not rebuilding!"
-          curl -o ./${complete_pkgname} http://apt.arvados.org/pool/${D}/main/${repo_subdir}/${complete_pkgname}
-          return 1
-        elif test -f "$WORKSPACE/packages/$TARGET/processed/${complete_pkgname}" ; then
-          echo "Package $complete_pkgname exists, not rebuilding!"
-          return 1
-        else
-          echo "Package $complete_pkgname not found, building"
-          return 0
-        fi
-      done
+      repo_pkg_list=$(curl -s -o - http://apt.arvados.org/pool/${D}/main/${repo_subdir}/)
+      echo ${repo_pkg_list} |grep -q ${complete_pkgname}
+      if [ $? -eq 0 ] ; then
+        echo "Package $complete_pkgname exists, not rebuilding!"
+        curl -s -o ./${complete_pkgname} http://apt.arvados.org/pool/${D}/main/${repo_subdir}/${complete_pkgname}
+        return 1
+      elif test -f "$WORKSPACE/packages/$TARGET/processed/${complete_pkgname}" ; then
+        echo "Package $complete_pkgname exists, not rebuilding!"
+        return 1
+      else
+        echo "Package $complete_pkgname not found, building"
+        return 0
+      fi
     else
       centos_repo="http://rpm.arvados.org/CentOS/7/dev/x86_64/"
 
-      repo_pkg_list=$(curl -o - ${centos_repo})
+      repo_pkg_list=$(curl -s -o - ${centos_repo})
       echo ${repo_pkg_list} |grep -q ${complete_pkgname}
       if [ $? -eq 0 ]; then
         echo "Package $complete_pkgname exists, not rebuilding!"
-        curl -o ./${complete_pkgname} ${centos_repo}${complete_pkgname}
+        curl -s -o ./${complete_pkgname} ${centos_repo}${complete_pkgname}
         return 1
       elif test -f "$WORKSPACE/packages/$TARGET/processed/${complete_pkgname}" ; then
         echo "Package $complete_pkgname exists, not rebuilding!"
@@ -330,7 +334,7 @@ handle_rails_package() {
         return 1
     fi
     local railsdir="/var/www/${pkgname%-server}/current"
-    local -a pos_args=("$srcdir/=$railsdir" "$pkgname" "Curoverse, Inc." dir "$version")
+    local -a pos_args=("$srcdir/=$railsdir" "$pkgname" dir "$version")
     local license_arg="$license_path=$railsdir/$(basename "$license_path")"
     local -a switches=(--after-install "$scripts_dir/postinst"
                        --before-remove "$scripts_dir/prerm"
@@ -348,6 +352,15 @@ handle_rails_package() {
     if  [[ "$pkgname" != "arvados-workbench" ]]; then
       exclude_list+=('config/database.yml')
     fi
+    # for arvados-api-server, we need to dereference the
+    # config/config.default.yml file. There is no fpm way to do that, sadly
+    # (excluding the existing symlink and then adding the file from its source
+    # path doesn't work, sadly.
+    if [[ "$pkgname" == "arvados-api-server" ]]; then
+      mv /arvados/services/api/config/config.default.yml /arvados/services/api/config/config.default.yml.bu
+      cp -p /arvados/lib/config/config.default.yml /arvados/services/api/config/
+      exclude_list+=('config/config.default.yml.bu')
+    fi
     for exclude in ${exclude_list[@]}; do
         switches+=(-x "$exclude_root/$exclude")
     done
@@ -355,6 +368,11 @@ handle_rails_package() {
               -x "$exclude_root/vendor/cache-*" \
               -x "$exclude_root/vendor/bundle" "$@" "$license_arg"
     rm -rf "$scripts_dir"
+    # Undo the deferencing we did above
+    if [[ "$pkgname" == "arvados-api-server" ]]; then
+      rm -f /arvados/services/api/config/config.default.yml
+      mv /arvados/services/api/config/config.default.yml.bu /arvados/services/api/config/config.default.yml
+    fi
 }
 
 # Build python packages with a virtualenv built-in
@@ -381,16 +399,23 @@ fpm_build_virtualenv () {
 
   local python=""
   case "$PACKAGE_TYPE" in
+    python3)
+        python=python3
+        if [[ "$FORMAT" != "rpm" ]]; then
+          pip=pip3
+        else
+          # In CentOS, we use a different mechanism to get the right version of pip
+          pip=pip
+        fi
+        PACKAGE_PREFIX=$PYTHON3_PKG_PREFIX
+        ;;
     python)
         # All Arvados Python2 packages depend on Python 2.7.
         # Make sure we build with that for consistency.
         python=python2.7
+        pip=pip
         PACKAGE_PREFIX=$PYTHON2_PKG_PREFIX
         ;;
-    python3)
-        PACKAGE_PREFIX=$PYTHON3_PKG_PREFIX
-        python=python3
-        ;;
   esac
 
   if [[ "$PKG" != "libpam-arvados" ]] &&
@@ -410,8 +435,15 @@ fpm_build_virtualenv () {
 
   rm -rf dist/*
 
-  if ! $python setup.py $DASHQ_UNLESS_DEBUG sdist; then
-    echo "Error, unable to run python setup.py sdist for $PKG"
+  # Get the latest setuptools
+  if ! $pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U setuptools; then
+    echo "Error, unable to upgrade setuptools with"
+    echo "  $pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U setuptools"
+    exit 1
+  fi
+  # filter a useless warning (when building the cwltest package) from the stderr output
+  if ! $python setup.py $DASHQ_UNLESS_DEBUG sdist 2> >(grep -v 'warning: no previously-included files matching'); then
+    echo "Error, unable to run $python setup.py sdist for $PKG"
     exit 1
   fi
 
@@ -437,7 +469,7 @@ fpm_build_virtualenv () {
 
   rm -rf build
   rm -f $PYTHON_PKG*deb
-
+  echo "virtualenv version: `virtualenv --version`"
   virtualenv_command="virtualenv --python `which $python` $DASHQ_UNLESS_DEBUG build/usr/share/$python/dist/$PYTHON_PKG"
 
   if ! $virtualenv_command; then
@@ -446,28 +478,38 @@ fpm_build_virtualenv () {
     exit 1
   fi
 
-  if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U pip; then
+  if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U pip; then
     echo "Error, unable to upgrade pip with"
-    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U pip"
+    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U pip"
+    exit 1
+  fi
+  echo "pip version:        `build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip --version`"
+
+  if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U setuptools; then
+    echo "Error, unable to upgrade setuptools with"
+    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U setuptools"
     exit 1
   fi
-  if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U wheel; then
+  echo "setuptools version: `build/usr/share/$python/dist/$PYTHON_PKG/bin/$python -c 'import setuptools; print(setuptools.__version__)'`"
+
+  if ! build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U wheel; then
     echo "Error, unable to upgrade wheel with"
-    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U wheel"
+    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG -U wheel"
     exit 1
   fi
+  echo "wheel version:      `build/usr/share/$python/dist/$PYTHON_PKG/bin/wheel version`"
 
   if [[ "$TARGET" != "centos7" ]] || [[ "$PYTHON_PKG" != "python-arvados-fuse" ]]; then
-    build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PACKAGE_PATH
+    build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PACKAGE_PATH
   else
     # centos7 needs these special tweaks to install python-arvados-fuse
-    build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG docutils
-    PYCURL_SSL_LIBRARY=nss build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PACKAGE_PATH
+    build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG docutils
+    PYCURL_SSL_LIBRARY=nss build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PACKAGE_PATH
   fi
 
   if [[ "$?" != "0" ]]; then
     echo "Error, unable to run"
-    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PACKAGE_PATH"
+    echo "  build/usr/share/$python/dist/$PYTHON_PKG/bin/$pip install $DASHQ_UNLESS_DEBUG $CACHE_FLAG $PACKAGE_PATH"
     exit 1
   fi
 
@@ -584,7 +626,7 @@ fpm_build_virtualenv () {
 
   COMMAND_ARR+=("${fpm_args[@]}")
 
-  # Make sure to install all our package binaries in /usr/local/bin.
+  # Make sure to install all our package binaries in /usr/bin.
   # We have to walk $WORKSPACE/$PKG_DIR/bin rather than
   # $WORKSPACE/build/usr/share/$python/dist/$PYTHON_PKG/bin/ to get the list
   # because the latter also includes all the python binaries for the virtualenv.
@@ -592,10 +634,24 @@ fpm_build_virtualenv () {
   # because those are the ones we rewrote the shebang line of, above.
   if [[ -e "$WORKSPACE/$PKG_DIR/bin" ]]; then
     for binary in `ls $WORKSPACE/$PKG_DIR/bin`; do
-      COMMAND_ARR+=("usr/share/$python/dist/$PYTHON_PKG/bin/$binary=/usr/local/bin/")
+      COMMAND_ARR+=("usr/share/$python/dist/$PYTHON_PKG/bin/$binary=/usr/bin/")
     done
   fi
 
+  # the libpam module should place a few files in the correct place for the pam
+  # subsystem
+  if [[ -e "$WORKSPACE/$PKG_DIR/dist/build/usr/share/$python/dist/$PYTHON_PKG/lib/security/libpam_arvados.py" ]]; then
+    COMMAND_ARR+=("usr/share/$python/dist/$PYTHON_PKG/lib/security/libpam_arvados.py=/usr/lib/security/")
+  fi
+  if [[ -e "$WORKSPACE/$PKG_DIR/dist/build/usr/share/$python/dist/$PYTHON_PKG/share/pam-configs/arvados" ]]; then
+    COMMAND_ARR+=("usr/share/$python/dist/$PYTHON_PKG/share/pam-configs/arvados=/usr/share/pam-configs/")
+  fi
+
+  # the python-arvados-cwl-runner package comes with cwltool, expose that version
+  if [[ -e "$WORKSPACE/$PKG_DIR/dist/build/usr/share/python2.7/dist/python-arvados-cwl-runner/bin/cwltool" ]]; then
+    COMMAND_ARR+=("usr/share/python2.7/dist/python-arvados-cwl-runner/bin/cwltool=/usr/bin/")
+  fi
+
   COMMAND_ARR+=(".")
 
   FPM_RESULTS=$("${COMMAND_ARR[@]}")
@@ -623,12 +679,8 @@ fpm_build () {
   # The name of the package to build.
   PACKAGE_NAME=$1
   shift
-  # Optional: the vendor of the package.  Should be "Curoverse, Inc." for
-  # packages of our own software.  Passed to fpm --vendor.
-  VENDOR=$1
-  shift
-  # The type of source package.  Passed to fpm -s.  Default "python".
-  PACKAGE_TYPE=${1:-python}
+  # The type of source package.  Passed to fpm -s.  Default "dir".
+  PACKAGE_TYPE=${1:-dir}
   shift
   # Optional: the package version number.  Passed to fpm -v.
   VERSION=$1
@@ -639,41 +691,8 @@ fpm_build () {
   fi
 
   local default_iteration_value="$(default_iteration "$PACKAGE" "$VERSION" "$PACKAGE_TYPE")"
-  local python=""
 
-  case "$PACKAGE_TYPE" in
-      python)
-          # All Arvados Python2 packages depend on Python 2.7.
-          # Make sure we build with that for consistency.
-          python=python2.7
-          set -- "$@" --python-bin python2.7 \
-              "${PYTHON_FPM_INSTALLER[@]}" \
-              --python-package-name-prefix "$PYTHON2_PKG_PREFIX" \
-              --prefix "$PYTHON2_PREFIX" \
-              --python-install-lib "$PYTHON2_INSTALL_LIB" \
-              --python-install-data . \
-              --exclude "${PYTHON2_INSTALL_LIB#/}/tests" \
-              --depends "$PYTHON2_PACKAGE"
-          ;;
-      python3)
-          # fpm does not actually support a python3 package type.  Instead
-          # we recognize it as a convenience shortcut to add several
-          # necessary arguments to fpm's command line later, after we're
-          # done handling positional arguments.
-          PACKAGE_TYPE=python
-          python=python3
-          set -- "$@" --python-bin python3 \
-              "${PYTHON3_FPM_INSTALLER[@]}" \
-              --python-package-name-prefix "$PYTHON3_PKG_PREFIX" \
-              --prefix "$PYTHON3_PREFIX" \
-              --python-install-lib "$PYTHON3_INSTALL_LIB" \
-              --python-install-data . \
-              --exclude "${PYTHON3_INSTALL_LIB#/}/tests" \
-              --depends "$PYTHON3_PACKAGE"
-          ;;
-  esac
-
-  declare -a COMMAND_ARR=("fpm" "--maintainer=Ward Vandewege <ward@curoverse.com>" "-s" "$PACKAGE_TYPE" "-t" "$FORMAT")
+  declare -a COMMAND_ARR=("fpm" "-s" "$PACKAGE_TYPE" "-t" "$FORMAT")
   if [ python = "$PACKAGE_TYPE" ] && [ deb = "$FORMAT" ]; then
       # Dependencies are built from setup.py.  Since setup.py will never
       # refer to Debian package iterations, it doesn't make sense to
@@ -700,6 +719,10 @@ fpm_build () {
     COMMAND_ARR+=('-n' "$PACKAGE_NAME")
   fi
 
+  if [[ "$MAINTAINER" != "" ]]; then
+    COMMAND_ARR+=('--maintainer' "$MAINTAINER")
+  fi
+
   if [[ "$VENDOR" != "" ]]; then
     COMMAND_ARR+=('--vendor' "$VENDOR")
   fi
@@ -713,14 +736,6 @@ fpm_build () {
       COMMAND_ARR+=(--iteration "$default_iteration_value")
   fi
 
-  if [[ python = "$PACKAGE_TYPE" ]] && [[ -e "${PACKAGE}/${PACKAGE_NAME}.service" ]]
-  then
-      COMMAND_ARR+=(
-          --after-install "${WORKSPACE}/build/go-python-package-scripts/postinst"
-          --before-remove "${WORKSPACE}/build/go-python-package-scripts/prerm"
-      )
-  fi
-
   # Append --depends X and other arguments specified by fpm-info.sh in
   # the package source dir. These are added last so they can override
   # the arguments added by this script.
@@ -730,12 +745,7 @@ fpm_build () {
   declare -a fpm_exclude=()
   declare -a fpm_dirs=(
       # source dir part of 'dir' package ("/source=/dest" => "/source"):
-      "${PACKAGE%%=/*}"
-      # backports ("llfuse>=1.0" => "backports/python-llfuse")
-      "${WORKSPACE}/backports/${PACKAGE_TYPE}-${PACKAGE%%[<=>]*}")
-  if [[ -n "$PACKAGE_NAME" ]]; then
-      fpm_dirs+=("${WORKSPACE}/backports/${PACKAGE_NAME}")
-  fi
+      "${PACKAGE%%=/*}")
   for pkgdir in "${fpm_dirs[@]}"; do
       fpminfo="$pkgdir/fpm-info.sh"
       if [[ -e "$fpminfo" ]]; then
@@ -833,14 +843,13 @@ install_package() {
   fi
 }
 
-title () {
-    txt="********** $1 **********"
-    printf "\n%*s%s\n\n" $((($COLUMNS-${#txt})/2)) "" "$txt"
+title() {
+    printf '%s %s\n' "=======" "$1"
 }
 
 checkexit() {
     if [[ "$1" != "0" ]]; then
-        title "!!!!!! $2 FAILED !!!!!!"
+        title "$2 -- FAILED"
         failures+=("$2 (`timer`)")
     else
         successes+=("$2 (`timer`)")
@@ -863,7 +872,9 @@ report_outcomes() {
 
     if [[ ${#failures[@]} == 0 ]]
     then
-        echo "All test suites passed."
+        if [[ ${#successes[@]} != 0 ]]; then
+           echo "All test suites passed."
+        fi
     else
         echo "Failures (${#failures[@]}):"
         for x in "${failures[@]}"