"size": 4
tool: 17267-broken-schemas.cwl
doc: "Test issue 17267 - inaccessible $schemas URL is not a fatal error"
+
+- job: null
+ output: {}
+ tool: wf/trick_defaults2.cwl
+ doc: "Test issue 17462 - secondary file objects on file defaults are not resolved"
+
+- job: null
+ output: {
+ "stuff": {
+ "location": "bar.txt",
+ "basename": "bar.txt",
+ "class": "File",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "size": 0
+ }
+ }
+ tool: 17521-dot-slash-glob.cwl
+ doc: "Test issue 17521 - bug with leading './' capturing files in subdirectories"
+
+- job: null
+ output: {
+ "stuff": {
+ "basename": "foo",
+ "class": "Directory",
+ "listing": [
+ {
+ "basename": "bar.txt",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "class": "File",
+ "location": "foo/bar.txt",
+ "size": 0
+ }
+ ],
+ "location": "foo"
+ }
+ }
+ tool: 10380-trailing-slash-dir.cwl
+ doc: "Test issue 10380 - bug with trailing slash when capturing an output directory"
+
+- job: null
+ output: {
+ "stuff": {
+ "basename": "78f3957c41d044352303a3fa326dff1e+102",
+ "class": "Directory",
+ "listing": [
+ {
+ "basename": "baz.txt",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "class": "File",
+ "location": "78f3957c41d044352303a3fa326dff1e+102/baz.txt",
+ "size": 0
+ },
+ {
+ "basename": "foo",
+ "class": "Directory",
+ "listing": [
+ {
+ "basename": "bar.txt",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "class": "File",
+ "location": "78f3957c41d044352303a3fa326dff1e+102/foo/bar.txt",
+ "size": 0
+ }
+ ],
+ "location": "78f3957c41d044352303a3fa326dff1e+102/foo"
+ }
+ ],
+ "location": "78f3957c41d044352303a3fa326dff1e+102"
+ }
+ }
+ tool: 17801-runtime-outdir.cwl
+ doc: "Test issue 17801 - bug using $(runtime.outdir) to capture the output directory"
+
+- job: null
+ output:
+ "val": "keep:f225e6259bdd63bc7240599648dde9f1+97/hg19.fa"
+ tool: 17858-pack-visit-crash.cwl
+ doc: "Test issue 17858 - keep ref default inputs on ExpressionTool"
+
+- job: 17879-ignore-sbg-fields-job.yml
+ output:
+ "outstr": "foo woble bar"
+ tool: 17879-ignore-sbg-fields.cwl
+ doc: "Test issue 17879 - ignores sbg fields"
+
+- job: chipseq/chip-seq-single.json
+ output: {}
+ tool: chipseq/cwl-packed.json
+ doc: "Test issue 18723 - correctly upload two directories with the same basename"
+
+- job: null
+ output: {}
+ tool: 18994-basename/wf_ren.cwl
+ doc: "Test issue 18994 - correctly stage file with modified basename"
+
+- job: 19109-upload-secondary.yml
+ output: {
+ "out": {
+ "basename": "file1.catted",
+ "class": "File",
+ "location": "file1.catted",
+ "size": 20,
+ "checksum": "sha1$c4cead17cebdd829f38c48e18a28f1da72339ef7"
+ },
+ "out2": {
+ "basename": "file2.catted",
+ "checksum": "sha1$6f71c5d1512519ede45bedfdd624e05fd8037b0d",
+ "class": "File",
+ "location": "file2.catted",
+ "size": 12
+ }
+ }
+ tool: 19109-upload-secondary.cwl
+ doc: "Test issue 19109 - correctly discover & upload secondary files"
+
+- job: 19678-name-id.yml
+ output: {
+ "processed_name": {
+ "first": "foo",
+ "last": "bar"
+ }
+ }
+ tool: 19678-name-id.cwl
+ doc: "Test issue 19678 - non-string type input parameter called 'name'"