+#' users.get
+#'
#' users.get is a method defined in Arvados class.
#'
#' @usage arv$users.get(uuid)
#' @name users.get
NULL
+#' users.create
+#'
#' users.create is a method defined in Arvados class.
#'
#' @usage arv$users.create(user, ensure_unique_name = "false")
#' @name users.create
NULL
+#' users.update
+#'
#' users.update is a method defined in Arvados class.
#'
#' @usage arv$users.update(user, uuid)
#' @name users.update
NULL
+#' users.delete
+#'
#' users.delete is a method defined in Arvados class.
#'
#' @usage arv$users.delete(uuid)
#' @name users.delete
NULL
+#' users.current
+#'
#' users.current is a method defined in Arvados class.
#'
#' @usage arv$users.current(NULL)
#' @name users.current
NULL
+#' users.system
+#'
#' users.system is a method defined in Arvados class.
#'
#' @usage arv$users.system(NULL)
#' @name users.system
NULL
+#' users.activate
+#'
#' users.activate is a method defined in Arvados class.
#'
#' @usage arv$users.activate(uuid)
#' @name users.activate
NULL
+#' users.setup
+#'
#' users.setup is a method defined in Arvados class.
#'
#' @usage arv$users.setup(user = NULL, openid_prefix = NULL,
#' @name users.setup
NULL
+#' users.unsetup
+#'
#' users.unsetup is a method defined in Arvados class.
#'
#' @usage arv$users.unsetup(uuid)
#' @name users.unsetup
NULL
+#' users.update_uuid
+#'
#' users.update_uuid is a method defined in Arvados class.
#'
#' @usage arv$users.update_uuid(uuid, new_uuid)
#' @name users.update_uuid
NULL
+#' users.merge
+#'
+#' users.merge is a method defined in Arvados class.
+#'
+#' @usage arv$users.merge(new_owner_uuid,
+#' new_user_token, redirect_to_new_user = NULL)
+#' @param new_owner_uuid
+#' @param new_user_token
+#' @param redirect_to_new_user
+#' @return User object.
+#' @name users.merge
+NULL
+
+#' users.list
+#'
#' users.list is a method defined in Arvados class.
#'
#' @usage arv$users.list(filters = NULL,
#' @name users.list
NULL
+#' api_client_authorizations.get
+#'
#' api_client_authorizations.get is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.get(uuid)
#' @name api_client_authorizations.get
NULL
+#' api_client_authorizations.create
+#'
#' api_client_authorizations.create is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.create(apiclientauthorization,
#' @name api_client_authorizations.create
NULL
+#' api_client_authorizations.update
+#'
#' api_client_authorizations.update is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.update(apiclientauthorization,
#' @name api_client_authorizations.update
NULL
+#' api_client_authorizations.delete
+#'
#' api_client_authorizations.delete is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.delete(uuid)
#' @name api_client_authorizations.delete
NULL
+#' api_client_authorizations.create_system_auth
+#'
#' api_client_authorizations.create_system_auth is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.create_system_auth(api_client_id = NULL,
#' @name api_client_authorizations.create_system_auth
NULL
+#' api_client_authorizations.current
+#'
#' api_client_authorizations.current is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.current(NULL)
#' @name api_client_authorizations.current
NULL
+#' api_client_authorizations.list
+#'
#' api_client_authorizations.list is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.list(filters = NULL,
#' @name api_client_authorizations.list
NULL
+#' containers.get
+#'
#' containers.get is a method defined in Arvados class.
#'
#' @usage arv$containers.get(uuid)
#' @name containers.get
NULL
+#' containers.create
+#'
#' containers.create is a method defined in Arvados class.
#'
#' @usage arv$containers.create(container,
#' @name containers.create
NULL
+#' containers.update
+#'
#' containers.update is a method defined in Arvados class.
#'
#' @usage arv$containers.update(container,
#' @name containers.update
NULL
+#' containers.delete
+#'
#' containers.delete is a method defined in Arvados class.
#'
#' @usage arv$containers.delete(uuid)
#' @name containers.delete
NULL
+#' containers.auth
+#'
#' containers.auth is a method defined in Arvados class.
#'
#' @usage arv$containers.auth(uuid)
#' @name containers.auth
NULL
+#' containers.lock
+#'
#' containers.lock is a method defined in Arvados class.
#'
#' @usage arv$containers.lock(uuid)
#' @name containers.lock
NULL
+#' containers.unlock
+#'
#' containers.unlock is a method defined in Arvados class.
#'
#' @usage arv$containers.unlock(uuid)
#' @name containers.unlock
NULL
+#' containers.secret_mounts
+#'
#' containers.secret_mounts is a method defined in Arvados class.
#'
#' @usage arv$containers.secret_mounts(uuid)
#' @name containers.secret_mounts
NULL
+#' containers.current
+#'
#' containers.current is a method defined in Arvados class.
#'
#' @usage arv$containers.current(NULL)
#' @name containers.current
NULL
+#' containers.list
+#'
#' containers.list is a method defined in Arvados class.
#'
#' @usage arv$containers.list(filters = NULL,
#' @name containers.list
NULL
+#' api_clients.get
+#'
#' api_clients.get is a method defined in Arvados class.
#'
#' @usage arv$api_clients.get(uuid)
#' @name api_clients.get
NULL
+#' api_clients.create
+#'
#' api_clients.create is a method defined in Arvados class.
#'
#' @usage arv$api_clients.create(apiclient,
#' @name api_clients.create
NULL
+#' api_clients.update
+#'
#' api_clients.update is a method defined in Arvados class.
#'
#' @usage arv$api_clients.update(apiclient,
#' @name api_clients.update
NULL
+#' api_clients.delete
+#'
#' api_clients.delete is a method defined in Arvados class.
#'
#' @usage arv$api_clients.delete(uuid)
#' @name api_clients.delete
NULL
+#' api_clients.list
+#'
#' api_clients.list is a method defined in Arvados class.
#'
#' @usage arv$api_clients.list(filters = NULL,
#' @name api_clients.list
NULL
-#' authorized_keys.get is a method defined in Arvados class.
+#' container_requests.get
#'
-#' @usage arv$authorized_keys.get(uuid)
-#' @param uuid The UUID of the AuthorizedKey in question.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.get
+#' container_requests.get is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.get(uuid)
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.get
NULL
-#' authorized_keys.create is a method defined in Arvados class.
+#' container_requests.create
#'
-#' @usage arv$authorized_keys.create(authorizedkey,
+#' container_requests.create is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.create(containerrequest,
#' ensure_unique_name = "false")
-#' @param authorizedKey AuthorizedKey object.
+#' @param containerRequest ContainerRequest object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.create
+#' @return ContainerRequest object.
+#' @name container_requests.create
NULL
-#' authorized_keys.update is a method defined in Arvados class.
+#' container_requests.update
#'
-#' @usage arv$authorized_keys.update(authorizedkey,
+#' container_requests.update is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.update(containerrequest,
#' uuid)
-#' @param authorizedKey AuthorizedKey object.
-#' @param uuid The UUID of the AuthorizedKey in question.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.update
+#' @param containerRequest ContainerRequest object.
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.update
NULL
-#' authorized_keys.delete is a method defined in Arvados class.
+#' container_requests.delete
#'
-#' @usage arv$authorized_keys.delete(uuid)
-#' @param uuid The UUID of the AuthorizedKey in question.
-#' @return AuthorizedKey object.
-#' @name authorized_keys.delete
+#' container_requests.delete is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.delete(uuid)
+#' @param uuid The UUID of the ContainerRequest in question.
+#' @return ContainerRequest object.
+#' @name container_requests.delete
NULL
-#' authorized_keys.list is a method defined in Arvados class.
+#' container_requests.list
#'
-#' @usage arv$authorized_keys.list(filters = NULL,
+#' container_requests.list is a method defined in Arvados class.
+#'
+#' @usage arv$container_requests.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return AuthorizedKeyList object.
-#' @name authorized_keys.list
+#' @return ContainerRequestList object.
+#' @name container_requests.list
NULL
-#' container_requests.get is a method defined in Arvados class.
+#' authorized_keys.get
#'
-#' @usage arv$container_requests.get(uuid)
-#' @param uuid The UUID of the ContainerRequest in question.
-#' @return ContainerRequest object.
-#' @name container_requests.get
+#' authorized_keys.get is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.get(uuid)
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.get
NULL
-#' container_requests.create is a method defined in Arvados class.
+#' authorized_keys.create
#'
-#' @usage arv$container_requests.create(containerrequest,
+#' authorized_keys.create is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.create(authorizedkey,
#' ensure_unique_name = "false")
-#' @param containerRequest ContainerRequest object.
+#' @param authorizedKey AuthorizedKey object.
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return ContainerRequest object.
-#' @name container_requests.create
+#' @return AuthorizedKey object.
+#' @name authorized_keys.create
NULL
-#' container_requests.update is a method defined in Arvados class.
+#' authorized_keys.update
#'
-#' @usage arv$container_requests.update(containerrequest,
+#' authorized_keys.update is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.update(authorizedkey,
#' uuid)
-#' @param containerRequest ContainerRequest object.
-#' @param uuid The UUID of the ContainerRequest in question.
-#' @return ContainerRequest object.
-#' @name container_requests.update
+#' @param authorizedKey AuthorizedKey object.
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.update
NULL
-#' container_requests.delete is a method defined in Arvados class.
+#' authorized_keys.delete
#'
-#' @usage arv$container_requests.delete(uuid)
-#' @param uuid The UUID of the ContainerRequest in question.
-#' @return ContainerRequest object.
-#' @name container_requests.delete
+#' authorized_keys.delete is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.delete(uuid)
+#' @param uuid The UUID of the AuthorizedKey in question.
+#' @return AuthorizedKey object.
+#' @name authorized_keys.delete
NULL
-#' container_requests.list is a method defined in Arvados class.
+#' authorized_keys.list
#'
-#' @usage arv$container_requests.list(filters = NULL,
+#' authorized_keys.list is a method defined in Arvados class.
+#'
+#' @usage arv$authorized_keys.list(filters = NULL,
#' where = NULL, order = NULL, select = NULL,
#' distinct = NULL, limit = "100", offset = "0",
#' count = "exact")
#' @param limit
#' @param offset
#' @param count
-#' @return ContainerRequestList object.
-#' @name container_requests.list
+#' @return AuthorizedKeyList object.
+#' @name authorized_keys.list
NULL
+#' collections.get
+#'
#' collections.get is a method defined in Arvados class.
#'
#' @usage arv$collections.get(uuid)
#' @name collections.get
NULL
+#' collections.create
+#'
#' collections.create is a method defined in Arvados class.
#'
#' @usage arv$collections.create(collection,
#' @name collections.create
NULL
+#' collections.update
+#'
#' collections.update is a method defined in Arvados class.
#'
#' @usage arv$collections.update(collection,
#' @name collections.update
NULL
+#' collections.delete
+#'
#' collections.delete is a method defined in Arvados class.
#'
#' @usage arv$collections.delete(uuid)
#' @name collections.delete
NULL
+#' collections.provenance
+#'
#' collections.provenance is a method defined in Arvados class.
#'
#' @usage arv$collections.provenance(uuid)
#' @name collections.provenance
NULL
+#' collections.used_by
+#'
#' collections.used_by is a method defined in Arvados class.
#'
#' @usage arv$collections.used_by(uuid)
#' @name collections.used_by
NULL
+#' collections.trash
+#'
#' collections.trash is a method defined in Arvados class.
#'
#' @usage arv$collections.trash(uuid)
#' @name collections.trash
NULL
+#' collections.untrash
+#'
#' collections.untrash is a method defined in Arvados class.
#'
#' @usage arv$collections.untrash(uuid)
#' @name collections.untrash
NULL
+#' collections.list
+#'
#' collections.list is a method defined in Arvados class.
#'
#' @usage arv$collections.list(filters = NULL,
#' @name collections.list
NULL
+#' humans.get
+#'
#' humans.get is a method defined in Arvados class.
#'
#' @usage arv$humans.get(uuid)
#' @name humans.get
NULL
+#' humans.create
+#'
#' humans.create is a method defined in Arvados class.
#'
#' @usage arv$humans.create(human, ensure_unique_name = "false")
#' @name humans.create
NULL
+#' humans.update
+#'
#' humans.update is a method defined in Arvados class.
#'
#' @usage arv$humans.update(human, uuid)
#' @name humans.update
NULL
+#' humans.delete
+#'
#' humans.delete is a method defined in Arvados class.
#'
#' @usage arv$humans.delete(uuid)
#' @name humans.delete
NULL
+#' humans.list
+#'
#' humans.list is a method defined in Arvados class.
#'
#' @usage arv$humans.list(filters = NULL,
#' @name humans.list
NULL
+#' job_tasks.get
+#'
#' job_tasks.get is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.get(uuid)
#' @name job_tasks.get
NULL
+#' job_tasks.create
+#'
#' job_tasks.create is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false")
#' @name job_tasks.create
NULL
+#' job_tasks.update
+#'
#' job_tasks.update is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.update(jobtask, uuid)
#' @name job_tasks.update
NULL
+#' job_tasks.delete
+#'
#' job_tasks.delete is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.delete(uuid)
#' @name job_tasks.delete
NULL
+#' job_tasks.list
+#'
#' job_tasks.list is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.list(filters = NULL,
#' @name job_tasks.list
NULL
-#' links.get is a method defined in Arvados class.
-#'
-#' @usage arv$links.get(uuid)
-#' @param uuid The UUID of the Link in question.
-#' @return Link object.
-#' @name links.get
-NULL
-
-#' links.create is a method defined in Arvados class.
-#'
-#' @usage arv$links.create(link, ensure_unique_name = "false")
-#' @param link Link object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @return Link object.
-#' @name links.create
-NULL
-
-#' links.update is a method defined in Arvados class.
-#'
-#' @usage arv$links.update(link, uuid)
-#' @param link Link object.
-#' @param uuid The UUID of the Link in question.
-#' @return Link object.
-#' @name links.update
-NULL
-
-#' links.delete is a method defined in Arvados class.
-#'
-#' @usage arv$links.delete(uuid)
-#' @param uuid The UUID of the Link in question.
-#' @return Link object.
-#' @name links.delete
-NULL
-
-#' links.list is a method defined in Arvados class.
-#'
-#' @usage arv$links.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return LinkList object.
-#' @name links.list
-NULL
-
-#' links.get_permissions is a method defined in Arvados class.
+#' jobs.get
#'
-#' @usage arv$links.get_permissions(uuid)
-#' @param uuid
-#' @return Link object.
-#' @name links.get_permissions
-NULL
-
#' jobs.get is a method defined in Arvados class.
#'
#' @usage arv$jobs.get(uuid)
#' @name jobs.get
NULL
+#' jobs.create
+#'
#' jobs.create is a method defined in Arvados class.
#'
#' @usage arv$jobs.create(job, ensure_unique_name = "false",
#' @name jobs.create
NULL
+#' jobs.update
+#'
#' jobs.update is a method defined in Arvados class.
#'
#' @usage arv$jobs.update(job, uuid)
#' @name jobs.update
NULL
+#' jobs.delete
+#'
#' jobs.delete is a method defined in Arvados class.
#'
#' @usage arv$jobs.delete(uuid)
#' @name jobs.delete
NULL
+#' jobs.queue
+#'
#' jobs.queue is a method defined in Arvados class.
#'
#' @usage arv$jobs.queue(filters = NULL,
#' @name jobs.queue
NULL
+#' jobs.queue_size
+#'
#' jobs.queue_size is a method defined in Arvados class.
#'
#' @usage arv$jobs.queue_size(NULL)
#' @name jobs.queue_size
NULL
+#' jobs.cancel
+#'
#' jobs.cancel is a method defined in Arvados class.
#'
#' @usage arv$jobs.cancel(uuid)
#' @name jobs.cancel
NULL
+#' jobs.lock
+#'
#' jobs.lock is a method defined in Arvados class.
#'
#' @usage arv$jobs.lock(uuid)
#' @name jobs.lock
NULL
+#' jobs.list
+#'
#' jobs.list is a method defined in Arvados class.
#'
#' @usage arv$jobs.list(filters = NULL, where = NULL,
#' @name jobs.list
NULL
+#' keep_disks.get
+#'
#' keep_disks.get is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.get(uuid)
#' @name keep_disks.get
NULL
+#' keep_disks.create
+#'
#' keep_disks.create is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.create(keepdisk,
#' @name keep_disks.create
NULL
+#' keep_disks.update
+#'
#' keep_disks.update is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.update(keepdisk,
#' @name keep_disks.update
NULL
+#' keep_disks.delete
+#'
#' keep_disks.delete is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.delete(uuid)
#' @name keep_disks.delete
NULL
+#' keep_disks.ping
+#'
#' keep_disks.ping is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.ping(uuid = NULL,
#' @name keep_disks.ping
NULL
+#' keep_disks.list
+#'
#' keep_disks.list is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.list(filters = NULL,
#' @name keep_disks.list
NULL
-#' keep_services.get is a method defined in Arvados class.
+#' nodes.get
#'
-#' @usage arv$keep_services.get(uuid)
-#' @param uuid The UUID of the KeepService in question.
-#' @return KeepService object.
-#' @name keep_services.get
+#' nodes.get is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.get(uuid)
+#' @param uuid The UUID of the Node in question.
+#' @return Node object.
+#' @name nodes.get
NULL
-#' keep_services.create is a method defined in Arvados class.
+#' nodes.create
#'
-#' @usage arv$keep_services.create(keepservice,
-#' ensure_unique_name = "false")
-#' @param keepService KeepService object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' nodes.create is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.create(node, ensure_unique_name = "false",
+#' assign_slot = NULL)
+#' @param node Node object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @param assign_slot assign slot and hostname
+#' @return Node object.
+#' @name nodes.create
+NULL
+
+#' nodes.update
+#'
+#' nodes.update is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.update(node, uuid, assign_slot = NULL)
+#' @param node Node object.
+#' @param uuid The UUID of the Node in question.
+#' @param assign_slot assign slot and hostname
+#' @return Node object.
+#' @name nodes.update
+NULL
+
+#' nodes.delete
+#'
+#' nodes.delete is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.delete(uuid)
+#' @param uuid The UUID of the Node in question.
+#' @return Node object.
+#' @name nodes.delete
+NULL
+
+#' nodes.ping
+#'
+#' nodes.ping is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.ping(uuid, ping_secret)
+#' @param uuid
+#' @param ping_secret
+#' @return Node object.
+#' @name nodes.ping
+NULL
+
+#' nodes.list
+#'
+#' nodes.list is a method defined in Arvados class.
+#'
+#' @usage arv$nodes.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return NodeList object.
+#' @name nodes.list
+NULL
+
+#' links.get
+#'
+#' links.get is a method defined in Arvados class.
+#'
+#' @usage arv$links.get(uuid)
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.get
+NULL
+
+#' links.create
+#'
+#' links.create is a method defined in Arvados class.
+#'
+#' @usage arv$links.create(link, ensure_unique_name = "false")
+#' @param link Link object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Link object.
+#' @name links.create
+NULL
+
+#' links.update
+#'
+#' links.update is a method defined in Arvados class.
+#'
+#' @usage arv$links.update(link, uuid)
+#' @param link Link object.
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.update
+NULL
+
+#' links.delete
+#'
+#' links.delete is a method defined in Arvados class.
+#'
+#' @usage arv$links.delete(uuid)
+#' @param uuid The UUID of the Link in question.
+#' @return Link object.
+#' @name links.delete
+NULL
+
+#' links.list
+#'
+#' links.list is a method defined in Arvados class.
+#'
+#' @usage arv$links.list(filters = NULL,
+#' where = NULL, order = NULL, select = NULL,
+#' distinct = NULL, limit = "100", offset = "0",
+#' count = "exact")
+#' @param filters
+#' @param where
+#' @param order
+#' @param select
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @return LinkList object.
+#' @name links.list
+NULL
+
+#' links.get_permissions
+#'
+#' links.get_permissions is a method defined in Arvados class.
+#'
+#' @usage arv$links.get_permissions(uuid)
+#' @param uuid
+#' @return Link object.
+#' @name links.get_permissions
+NULL
+
+#' keep_services.get
+#'
+#' keep_services.get is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.get(uuid)
+#' @param uuid The UUID of the KeepService in question.
+#' @return KeepService object.
+#' @name keep_services.get
+NULL
+
+#' keep_services.create
+#'
+#' keep_services.create is a method defined in Arvados class.
+#'
+#' @usage arv$keep_services.create(keepservice,
+#' ensure_unique_name = "false")
+#' @param keepService KeepService object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
#' @return KeepService object.
#' @name keep_services.create
NULL
+#' keep_services.update
+#'
#' keep_services.update is a method defined in Arvados class.
#'
#' @usage arv$keep_services.update(keepservice,
#' @name keep_services.update
NULL
+#' keep_services.delete
+#'
#' keep_services.delete is a method defined in Arvados class.
#'
#' @usage arv$keep_services.delete(uuid)
#' @name keep_services.delete
NULL
+#' keep_services.accessible
+#'
#' keep_services.accessible is a method defined in Arvados class.
#'
#' @usage arv$keep_services.accessible(NULL)
#' @name keep_services.accessible
NULL
+#' keep_services.list
+#'
#' keep_services.list is a method defined in Arvados class.
#'
#' @usage arv$keep_services.list(filters = NULL,
#' @name keep_services.list
NULL
+#' pipeline_templates.get
+#'
#' pipeline_templates.get is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.get(uuid)
#' @name pipeline_templates.get
NULL
+#' pipeline_templates.create
+#'
#' pipeline_templates.create is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.create(pipelinetemplate,
#' @name pipeline_templates.create
NULL
+#' pipeline_templates.update
+#'
#' pipeline_templates.update is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.update(pipelinetemplate,
#' @name pipeline_templates.update
NULL
+#' pipeline_templates.delete
+#'
#' pipeline_templates.delete is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.delete(uuid)
#' @name pipeline_templates.delete
NULL
+#' pipeline_templates.list
+#'
#' pipeline_templates.list is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.list(filters = NULL,
#' @name pipeline_templates.list
NULL
+#' pipeline_instances.get
+#'
#' pipeline_instances.get is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.get(uuid)
#' @name pipeline_instances.get
NULL
+#' pipeline_instances.create
+#'
#' pipeline_instances.create is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.create(pipelineinstance,
#' @name pipeline_instances.create
NULL
+#' pipeline_instances.update
+#'
#' pipeline_instances.update is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.update(pipelineinstance,
#' @name pipeline_instances.update
NULL
+#' pipeline_instances.delete
+#'
#' pipeline_instances.delete is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.delete(uuid)
#' @name pipeline_instances.delete
NULL
+#' pipeline_instances.cancel
+#'
#' pipeline_instances.cancel is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.cancel(uuid)
#' @name pipeline_instances.cancel
NULL
+#' pipeline_instances.list
+#'
#' pipeline_instances.list is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.list(filters = NULL,
#' @name pipeline_instances.list
NULL
-#' nodes.get is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.get(uuid)
-#' @param uuid The UUID of the Node in question.
-#' @return Node object.
-#' @name nodes.get
-NULL
-
-#' nodes.create is a method defined in Arvados class.
+#' repositories.get
#'
-#' @usage arv$nodes.create(node, ensure_unique_name = "false",
-#' assign_slot = NULL)
-#' @param node Node object.
-#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
-#' @param assign_slot assign slot and hostname
-#' @return Node object.
-#' @name nodes.create
-NULL
-
-#' nodes.update is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.update(node, uuid, assign_slot = NULL)
-#' @param node Node object.
-#' @param uuid The UUID of the Node in question.
-#' @param assign_slot assign slot and hostname
-#' @return Node object.
-#' @name nodes.update
-NULL
-
-#' nodes.delete is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.delete(uuid)
-#' @param uuid The UUID of the Node in question.
-#' @return Node object.
-#' @name nodes.delete
-NULL
-
-#' nodes.ping is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.ping(uuid, ping_secret)
-#' @param uuid
-#' @param ping_secret
-#' @return Node object.
-#' @name nodes.ping
-NULL
-
-#' nodes.list is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.list(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return NodeList object.
-#' @name nodes.list
-NULL
-
#' repositories.get is a method defined in Arvados class.
#'
#' @usage arv$repositories.get(uuid)
#' @name repositories.get
NULL
+#' repositories.create
+#'
#' repositories.create is a method defined in Arvados class.
#'
#' @usage arv$repositories.create(repository,
#' @name repositories.create
NULL
+#' repositories.update
+#'
#' repositories.update is a method defined in Arvados class.
#'
#' @usage arv$repositories.update(repository,
#' @name repositories.update
NULL
+#' repositories.delete
+#'
#' repositories.delete is a method defined in Arvados class.
#'
#' @usage arv$repositories.delete(uuid)
#' @name repositories.delete
NULL
+#' repositories.get_all_permissions
+#'
#' repositories.get_all_permissions is a method defined in Arvados class.
#'
#' @usage arv$repositories.get_all_permissions(NULL)
#' @name repositories.get_all_permissions
NULL
+#' repositories.list
+#'
#' repositories.list is a method defined in Arvados class.
#'
#' @usage arv$repositories.list(filters = NULL,
#' @name repositories.list
NULL
+#' specimens.get
+#'
#' specimens.get is a method defined in Arvados class.
#'
#' @usage arv$specimens.get(uuid)
#' @name specimens.get
NULL
+#' specimens.create
+#'
#' specimens.create is a method defined in Arvados class.
#'
#' @usage arv$specimens.create(specimen,
#' @name specimens.create
NULL
+#' specimens.update
+#'
#' specimens.update is a method defined in Arvados class.
#'
#' @usage arv$specimens.update(specimen,
#' @name specimens.update
NULL
+#' specimens.delete
+#'
#' specimens.delete is a method defined in Arvados class.
#'
#' @usage arv$specimens.delete(uuid)
#' @name specimens.delete
NULL
+#' specimens.list
+#'
#' specimens.list is a method defined in Arvados class.
#'
#' @usage arv$specimens.list(filters = NULL,
#' @name specimens.list
NULL
+#' logs.get
+#'
#' logs.get is a method defined in Arvados class.
#'
#' @usage arv$logs.get(uuid)
#' @name logs.get
NULL
+#' logs.create
+#'
#' logs.create is a method defined in Arvados class.
#'
#' @usage arv$logs.create(log, ensure_unique_name = "false")
#' @name logs.create
NULL
+#' logs.update
+#'
#' logs.update is a method defined in Arvados class.
#'
#' @usage arv$logs.update(log, uuid)
#' @name logs.update
NULL
+#' logs.delete
+#'
#' logs.delete is a method defined in Arvados class.
#'
#' @usage arv$logs.delete(uuid)
#' @name logs.delete
NULL
+#' logs.list
+#'
#' logs.list is a method defined in Arvados class.
#'
#' @usage arv$logs.list(filters = NULL, where = NULL,
#' @name logs.list
NULL
+#' traits.get
+#'
#' traits.get is a method defined in Arvados class.
#'
#' @usage arv$traits.get(uuid)
#' @name traits.get
NULL
+#' traits.create
+#'
#' traits.create is a method defined in Arvados class.
#'
#' @usage arv$traits.create(trait, ensure_unique_name = "false")
#' @name traits.create
NULL
+#' traits.update
+#'
#' traits.update is a method defined in Arvados class.
#'
#' @usage arv$traits.update(trait, uuid)
#' @name traits.update
NULL
+#' traits.delete
+#'
#' traits.delete is a method defined in Arvados class.
#'
#' @usage arv$traits.delete(uuid)
#' @name traits.delete
NULL
+#' traits.list
+#'
#' traits.list is a method defined in Arvados class.
#'
#' @usage arv$traits.list(filters = NULL,
#' @name traits.list
NULL
+#' virtual_machines.get
+#'
#' virtual_machines.get is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.get(uuid)
#' @name virtual_machines.get
NULL
+#' virtual_machines.create
+#'
#' virtual_machines.create is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.create(virtualmachine,
#' @name virtual_machines.create
NULL
+#' virtual_machines.update
+#'
#' virtual_machines.update is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.update(virtualmachine,
#' @name virtual_machines.update
NULL
+#' virtual_machines.delete
+#'
#' virtual_machines.delete is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.delete(uuid)
#' @name virtual_machines.delete
NULL
+#' virtual_machines.logins
+#'
#' virtual_machines.logins is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.logins(uuid)
#' @name virtual_machines.logins
NULL
+#' virtual_machines.get_all_logins
+#'
#' virtual_machines.get_all_logins is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.get_all_logins(NULL)
#' @name virtual_machines.get_all_logins
NULL
+#' virtual_machines.list
+#'
#' virtual_machines.list is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.list(filters = NULL,
#' @name virtual_machines.list
NULL
+#' workflows.get
+#'
#' workflows.get is a method defined in Arvados class.
#'
#' @usage arv$workflows.get(uuid)
#' @name workflows.get
NULL
+#' workflows.create
+#'
#' workflows.create is a method defined in Arvados class.
#'
#' @usage arv$workflows.create(workflow,
#' @name workflows.create
NULL
+#' workflows.update
+#'
#' workflows.update is a method defined in Arvados class.
#'
#' @usage arv$workflows.update(workflow,
#' @name workflows.update
NULL
+#' workflows.delete
+#'
#' workflows.delete is a method defined in Arvados class.
#'
#' @usage arv$workflows.delete(uuid)
#' @name workflows.delete
NULL
+#' workflows.list
+#'
#' workflows.list is a method defined in Arvados class.
#'
#' @usage arv$workflows.list(filters = NULL,
#' @name workflows.list
NULL
+#' groups.get
+#'
#' groups.get is a method defined in Arvados class.
#'
#' @usage arv$groups.get(uuid)
#' @name groups.get
NULL
+#' groups.create
+#'
#' groups.create is a method defined in Arvados class.
#'
#' @usage arv$groups.create(group, ensure_unique_name = "false")
#' @name groups.create
NULL
+#' groups.update
+#'
#' groups.update is a method defined in Arvados class.
#'
#' @usage arv$groups.update(group, uuid)
#' @name groups.update
NULL
+#' groups.delete
+#'
#' groups.delete is a method defined in Arvados class.
#'
#' @usage arv$groups.delete(uuid)
#' @name groups.delete
NULL
+#' groups.contents
+#'
#' groups.contents is a method defined in Arvados class.
#'
#' @usage arv$groups.contents(filters = NULL,
#' @name groups.contents
NULL
+#' groups.trash
+#'
#' groups.trash is a method defined in Arvados class.
#'
#' @usage arv$groups.trash(uuid)
#' @name groups.trash
NULL
+#' groups.untrash
+#'
#' groups.untrash is a method defined in Arvados class.
#'
#' @usage arv$groups.untrash(uuid)
#' @name groups.untrash
NULL
+#' groups.list
+#'
#' groups.list is a method defined in Arvados class.
#'
#' @usage arv$groups.list(filters = NULL,
#' @name groups.list
NULL
+#' user_agreements.get
+#'
#' user_agreements.get is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.get(uuid)
#' @name user_agreements.get
NULL
+#' user_agreements.create
+#'
#' user_agreements.create is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.create(useragreement,
#' @name user_agreements.create
NULL
+#' user_agreements.update
+#'
#' user_agreements.update is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.update(useragreement,
#' @name user_agreements.update
NULL
+#' user_agreements.delete
+#'
#' user_agreements.delete is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.delete(uuid)
#' @name user_agreements.delete
NULL
+#' user_agreements.signatures
+#'
#' user_agreements.signatures is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.signatures(NULL)
#' @name user_agreements.signatures
NULL
+#' user_agreements.sign
+#'
#' user_agreements.sign is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.sign(NULL)
#' @name user_agreements.sign
NULL
+#' user_agreements.list
+#'
#' user_agreements.list is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.list(filters = NULL,
#' @name user_agreements.list
NULL
+#' user_agreements.new
+#'
#' user_agreements.new is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.new(NULL)
#' @name user_agreements.new
NULL
+#' project.get
+#'
+#' projects.get is equivalent to groups.get method.
+#'
+#' @usage arv$projects.get(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name projects.get
+NULL
+
+#' project.create
+#'
+#' projects.create wrapps groups.create method by setting group_class attribute to "project".
+#'
+#' @usage arv$projects.create(group, ensure_unique_name = "false")
+#' @param group Group object.
+#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision.
+#' @return Group object.
+#' @name projects.create
+NULL
+
+#' project.update
+#'
+#' projects.update wrapps groups.update method by setting group_class attribute to "project".
+#'
+#' @usage arv$projects.update(group, uuid)
+#' @param group Group object.
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name projects.update
+NULL
+
+#' project.delete
+#'
+#' projects.delete is equivalent to groups.delete method.
+#'
+#' @usage arv$project.delete(uuid)
+#' @param uuid The UUID of the Group in question.
+#' @return Group object.
+#' @name projects.delete
+NULL
+
+#' project.list
+#'
+#' projects.list wrapps groups.list method by setting group_class attribute to "project".
+#'
+#' @usage arv$projects.list(filters = NULL,
+#' where = NULL, order = NULL, distinct = NULL,
+#' limit = "100", offset = "0", count = "exact",
+#' include_trash = NULL, uuid = NULL, recursive = NULL)
+#' @param filters
+#' @param where
+#' @param order
+#' @param distinct
+#' @param limit
+#' @param offset
+#' @param count
+#' @param include_trash Include items whose is_trashed attribute is true.
+#' @param uuid
+#' @param recursive Include contents from child groups recursively.
+#' @return Group object.
+#' @name projects.list
+NULL
+
+#' Arvados
+#'
+#' Arvados class gives users ability to access Arvados REST API.
+#'
+#' @section Usage:
+#' \preformatted{arv = Arvados$new(authToken = NULL, hostName = NULL, numRetries = 0)}
+#'
+#' @section Arguments:
+#' \describe{
+#' \item{authToken}{Authentification token. If not specified ARVADOS_API_TOKEN environment variable will be used.}
+#' \item{hostName}{Host name. If not specified ARVADOS_API_HOST environment variable will be used.}
+#' \item{numRetries}{Number which specifies how many times to retry failed service requests.}
+#' }
+#'
+#' @section Methods:
+#' \describe{
+#' \item{}{\code{\link{api_client_authorizations.create}}}
+#' \item{}{\code{\link{api_client_authorizations.create_system_auth}}}
+#' \item{}{\code{\link{api_client_authorizations.current}}}
+#' \item{}{\code{\link{api_client_authorizations.delete}}}
+#' \item{}{\code{\link{api_client_authorizations.get}}}
+#' \item{}{\code{\link{api_client_authorizations.list}}}
+#' \item{}{\code{\link{api_client_authorizations.update}}}
+#' \item{}{\code{\link{api_clients.create}}}
+#' \item{}{\code{\link{api_clients.delete}}}
+#' \item{}{\code{\link{api_clients.get}}}
+#' \item{}{\code{\link{api_clients.list}}}
+#' \item{}{\code{\link{api_clients.update}}}
+#' \item{}{\code{\link{authorized_keys.create}}}
+#' \item{}{\code{\link{authorized_keys.delete}}}
+#' \item{}{\code{\link{authorized_keys.get}}}
+#' \item{}{\code{\link{authorized_keys.list}}}
+#' \item{}{\code{\link{authorized_keys.update}}}
+#' \item{}{\code{\link{collections.create}}}
+#' \item{}{\code{\link{collections.delete}}}
+#' \item{}{\code{\link{collections.get}}}
+#' \item{}{\code{\link{collections.list}}}
+#' \item{}{\code{\link{collections.provenance}}}
+#' \item{}{\code{\link{collections.trash}}}
+#' \item{}{\code{\link{collections.untrash}}}
+#' \item{}{\code{\link{collections.update}}}
+#' \item{}{\code{\link{collections.used_by}}}
+#' \item{}{\code{\link{container_requests.create}}}
+#' \item{}{\code{\link{container_requests.delete}}}
+#' \item{}{\code{\link{container_requests.get}}}
+#' \item{}{\code{\link{container_requests.list}}}
+#' \item{}{\code{\link{container_requests.update}}}
+#' \item{}{\code{\link{containers.auth}}}
+#' \item{}{\code{\link{containers.create}}}
+#' \item{}{\code{\link{containers.current}}}
+#' \item{}{\code{\link{containers.delete}}}
+#' \item{}{\code{\link{containers.get}}}
+#' \item{}{\code{\link{containers.list}}}
+#' \item{}{\code{\link{containers.lock}}}
+#' \item{}{\code{\link{containers.secret_mounts}}}
+#' \item{}{\code{\link{containers.unlock}}}
+#' \item{}{\code{\link{containers.update}}}
+#' \item{}{\code{\link{groups.contents}}}
+#' \item{}{\code{\link{groups.create}}}
+#' \item{}{\code{\link{groups.delete}}}
+#' \item{}{\code{\link{groups.get}}}
+#' \item{}{\code{\link{groups.list}}}
+#' \item{}{\code{\link{groups.trash}}}
+#' \item{}{\code{\link{groups.untrash}}}
+#' \item{}{\code{\link{groups.update}}}
+#' \item{}{\code{\link{humans.create}}}
+#' \item{}{\code{\link{humans.delete}}}
+#' \item{}{\code{\link{humans.get}}}
+#' \item{}{\code{\link{humans.list}}}
+#' \item{}{\code{\link{humans.update}}}
+#' \item{}{\code{\link{jobs.cancel}}}
+#' \item{}{\code{\link{jobs.create}}}
+#' \item{}{\code{\link{jobs.delete}}}
+#' \item{}{\code{\link{jobs.get}}}
+#' \item{}{\code{\link{jobs.list}}}
+#' \item{}{\code{\link{jobs.lock}}}
+#' \item{}{\code{\link{jobs.queue}}}
+#' \item{}{\code{\link{jobs.queue_size}}}
+#' \item{}{\code{\link{jobs.update}}}
+#' \item{}{\code{\link{job_tasks.create}}}
+#' \item{}{\code{\link{job_tasks.delete}}}
+#' \item{}{\code{\link{job_tasks.get}}}
+#' \item{}{\code{\link{job_tasks.list}}}
+#' \item{}{\code{\link{job_tasks.update}}}
+#' \item{}{\code{\link{keep_disks.create}}}
+#' \item{}{\code{\link{keep_disks.delete}}}
+#' \item{}{\code{\link{keep_disks.get}}}
+#' \item{}{\code{\link{keep_disks.list}}}
+#' \item{}{\code{\link{keep_disks.ping}}}
+#' \item{}{\code{\link{keep_disks.update}}}
+#' \item{}{\code{\link{keep_services.accessible}}}
+#' \item{}{\code{\link{keep_services.create}}}
+#' \item{}{\code{\link{keep_services.delete}}}
+#' \item{}{\code{\link{keep_services.get}}}
+#' \item{}{\code{\link{keep_services.list}}}
+#' \item{}{\code{\link{keep_services.update}}}
+#' \item{}{\code{\link{links.create}}}
+#' \item{}{\code{\link{links.delete}}}
+#' \item{}{\code{\link{links.get}}}
+#' \item{}{\code{\link{links.get_permissions}}}
+#' \item{}{\code{\link{links.list}}}
+#' \item{}{\code{\link{links.update}}}
+#' \item{}{\code{\link{logs.create}}}
+#' \item{}{\code{\link{logs.delete}}}
+#' \item{}{\code{\link{logs.get}}}
+#' \item{}{\code{\link{logs.list}}}
+#' \item{}{\code{\link{logs.update}}}
+#' \item{}{\code{\link{nodes.create}}}
+#' \item{}{\code{\link{nodes.delete}}}
+#' \item{}{\code{\link{nodes.get}}}
+#' \item{}{\code{\link{nodes.list}}}
+#' \item{}{\code{\link{nodes.ping}}}
+#' \item{}{\code{\link{nodes.update}}}
+#' \item{}{\code{\link{pipeline_instances.cancel}}}
+#' \item{}{\code{\link{pipeline_instances.create}}}
+#' \item{}{\code{\link{pipeline_instances.delete}}}
+#' \item{}{\code{\link{pipeline_instances.get}}}
+#' \item{}{\code{\link{pipeline_instances.list}}}
+#' \item{}{\code{\link{pipeline_instances.update}}}
+#' \item{}{\code{\link{pipeline_templates.create}}}
+#' \item{}{\code{\link{pipeline_templates.delete}}}
+#' \item{}{\code{\link{pipeline_templates.get}}}
+#' \item{}{\code{\link{pipeline_templates.list}}}
+#' \item{}{\code{\link{pipeline_templates.update}}}
+#' \item{}{\code{\link{projects.create}}}
+#' \item{}{\code{\link{projects.delete}}}
+#' \item{}{\code{\link{projects.get}}}
+#' \item{}{\code{\link{projects.list}}}
+#' \item{}{\code{\link{projects.update}}}
+#' \item{}{\code{\link{repositories.create}}}
+#' \item{}{\code{\link{repositories.delete}}}
+#' \item{}{\code{\link{repositories.get}}}
+#' \item{}{\code{\link{repositories.get_all_permissions}}}
+#' \item{}{\code{\link{repositories.list}}}
+#' \item{}{\code{\link{repositories.update}}}
+#' \item{}{\code{\link{specimens.create}}}
+#' \item{}{\code{\link{specimens.delete}}}
+#' \item{}{\code{\link{specimens.get}}}
+#' \item{}{\code{\link{specimens.list}}}
+#' \item{}{\code{\link{specimens.update}}}
+#' \item{}{\code{\link{traits.create}}}
+#' \item{}{\code{\link{traits.delete}}}
+#' \item{}{\code{\link{traits.get}}}
+#' \item{}{\code{\link{traits.list}}}
+#' \item{}{\code{\link{traits.update}}}
+#' \item{}{\code{\link{user_agreements.create}}}
+#' \item{}{\code{\link{user_agreements.delete}}}
+#' \item{}{\code{\link{user_agreements.get}}}
+#' \item{}{\code{\link{user_agreements.list}}}
+#' \item{}{\code{\link{user_agreements.new}}}
+#' \item{}{\code{\link{user_agreements.sign}}}
+#' \item{}{\code{\link{user_agreements.signatures}}}
+#' \item{}{\code{\link{user_agreements.update}}}
+#' \item{}{\code{\link{users.activate}}}
+#' \item{}{\code{\link{users.create}}}
+#' \item{}{\code{\link{users.current}}}
+#' \item{}{\code{\link{users.delete}}}
+#' \item{}{\code{\link{users.get}}}
+#' \item{}{\code{\link{users.list}}}
+#' \item{}{\code{\link{users.merge}}}
+#' \item{}{\code{\link{users.setup}}}
+#' \item{}{\code{\link{users.system}}}
+#' \item{}{\code{\link{users.unsetup}}}
+#' \item{}{\code{\link{users.update}}}
+#' \item{}{\code{\link{users.update_uuid}}}
+#' \item{}{\code{\link{virtual_machines.create}}}
+#' \item{}{\code{\link{virtual_machines.delete}}}
+#' \item{}{\code{\link{virtual_machines.get}}}
+#' \item{}{\code{\link{virtual_machines.get_all_logins}}}
+#' \item{}{\code{\link{virtual_machines.list}}}
+#' \item{}{\code{\link{virtual_machines.logins}}}
+#' \item{}{\code{\link{virtual_machines.update}}}
+#' \item{}{\code{\link{workflows.create}}}
+#' \item{}{\code{\link{workflows.delete}}}
+#' \item{}{\code{\link{workflows.get}}}
+#' \item{}{\code{\link{workflows.list}}}
+#' \item{}{\code{\link{workflows.update}}}
+#' }
+#'
+#' @name Arvados
+#' @examples
+#' \dontrun{
+#' arv <- Arvados$new("your Arvados token", "example.arvadosapi.com")
+#'
+#' collection <- arv$collections.get("uuid")
+#'
+#' collectionList <- arv$collections.list(list(list("name", "like", "Test%")))
+#' collectionList <- listAll(arv$collections.list, list(list("name", "like", "Test%")))
+#'
+#' deletedCollection <- arv$collections.delete("uuid")
+#'
+#' updatedCollection <- arv$collections.update(list(name = "New name", description = "New description"),
+#' "uuid")
+#'
+#' createdCollection <- arv$collections.create(list(name = "Example",
+#' description = "This is a test collection"))
+#' }
+NULL
+
#' @export
Arvados <- R6::R6Class(
},
- project.get = function(uuid)
+ projects.get = function(uuid)
{
self$groups.get(uuid)
},
- project.create = function(group, ensure_unique_name = "false")
+ projects.create = function(group, ensure_unique_name = "false")
{
group <- c("group_class" = "project", group)
self$groups.create(group, ensure_unique_name)
},
- project.update = function(group, uuid)
+ projects.update = function(group, uuid)
{
group <- c("group_class" = "project", group)
self$groups.update(group, uuid)
},
- project.list = function(filters = NULL, where = NULL,
+ projects.list = function(filters = NULL, where = NULL,
order = NULL, select = NULL, distinct = NULL,
limit = "100", offset = "0", count = "exact",
include_trash = NULL)
limit, offset, count, include_trash)
},
- project.delete = function(uuid)
+ projects.delete = function(uuid)
{
self$groups.delete(uuid)
},
resource
},
- users.update_uuid = function(uuid, new_uuid)
+ users.update_uuid = function(uuid, new_uuid)
+ {
+ endPoint <- stringr::str_interp("users/${uuid}/update_uuid")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(new_uuid = new_uuid)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ users.merge = function(new_owner_uuid, new_user_token,
+ redirect_to_new_user = NULL)
{
- endPoint <- stringr::str_interp("users/${uuid}/update_uuid")
+ endPoint <- stringr::str_interp("users/merge")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(new_uuid = new_uuid)
+ queryArgs <- list(new_owner_uuid = new_owner_uuid,
+ new_user_token = new_user_token, redirect_to_new_user = redirect_to_new_user)
body <- NULL
resource
},
- authorized_keys.get = function(uuid)
+ container_requests.get = function(uuid)
{
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- authorized_keys.create = function(authorizedkey,
+ container_requests.create = function(containerrequest,
ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("authorized_keys")
+ endPoint <- stringr::str_interp("container_requests")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(authorizedkey) > 0)
- body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
+ if(length(containerrequest) > 0)
+ body <- jsonlite::toJSON(list(containerrequest = containerrequest),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- authorized_keys.update = function(authorizedkey, uuid)
+ container_requests.update = function(containerrequest, uuid)
{
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(authorizedkey) > 0)
- body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
+ if(length(containerrequest) > 0)
+ body <- jsonlite::toJSON(list(containerrequest = containerrequest),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- authorized_keys.delete = function(uuid)
+ container_requests.delete = function(uuid)
{
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
+ endPoint <- stringr::str_interp("container_requests/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- authorized_keys.list = function(filters = NULL,
+ container_requests.list = function(filters = NULL,
where = NULL, order = NULL, select = NULL,
distinct = NULL, limit = "100", offset = "0",
count = "exact")
{
- endPoint <- stringr::str_interp("authorized_keys")
+ endPoint <- stringr::str_interp("container_requests")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- container_requests.get = function(uuid)
+ authorized_keys.get = function(uuid)
{
- endPoint <- stringr::str_interp("container_requests/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- container_requests.create = function(containerrequest,
+ authorized_keys.create = function(authorizedkey,
ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("container_requests")
+ endPoint <- stringr::str_interp("authorized_keys")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(containerrequest) > 0)
- body <- jsonlite::toJSON(list(containerrequest = containerrequest),
+ if(length(authorizedkey) > 0)
+ body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- container_requests.update = function(containerrequest, uuid)
+ authorized_keys.update = function(authorizedkey, uuid)
{
- endPoint <- stringr::str_interp("container_requests/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(containerrequest) > 0)
- body <- jsonlite::toJSON(list(containerrequest = containerrequest),
+ if(length(authorizedkey) > 0)
+ body <- jsonlite::toJSON(list(authorizedkey = authorizedkey),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- container_requests.delete = function(uuid)
+ authorized_keys.delete = function(uuid)
{
- endPoint <- stringr::str_interp("container_requests/${uuid}")
+ endPoint <- stringr::str_interp("authorized_keys/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- container_requests.list = function(filters = NULL,
+ authorized_keys.list = function(filters = NULL,
where = NULL, order = NULL, select = NULL,
distinct = NULL, limit = "100", offset = "0",
count = "exact")
{
- endPoint <- stringr::str_interp("container_requests")
+ endPoint <- stringr::str_interp("authorized_keys")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- links.get = function(uuid)
+ jobs.get = function(uuid)
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- links.create = function(link, ensure_unique_name = "false")
+ jobs.create = function(job, ensure_unique_name = "false",
+ find_or_create = "false", filters = NULL,
+ minimum_script_version = NULL, exclude_script_versions = NULL)
{
- endPoint <- stringr::str_interp("links")
+ endPoint <- stringr::str_interp("jobs")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name,
+ find_or_create = find_or_create, filters = filters,
+ minimum_script_version = minimum_script_version,
+ exclude_script_versions = exclude_script_versions)
- if(length(link) > 0)
- body <- jsonlite::toJSON(list(link = link),
+ if(length(job) > 0)
+ body <- jsonlite::toJSON(list(job = job),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- links.update = function(link, uuid)
+ jobs.update = function(job, uuid)
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(link) > 0)
- body <- jsonlite::toJSON(list(link = link),
+ if(length(job) > 0)
+ body <- jsonlite::toJSON(list(job = job),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- links.delete = function(uuid)
+ jobs.delete = function(uuid)
{
- endPoint <- stringr::str_interp("links/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- links.list = function(filters = NULL, where = NULL,
+ jobs.queue = function(filters = NULL, where = NULL,
order = NULL, select = NULL, distinct = NULL,
limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("links")
+ endPoint <- stringr::str_interp("jobs/queue")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- links.get_permissions = function(uuid)
+ jobs.queue_size = function()
{
- endPoint <- stringr::str_interp("permissions/${uuid}")
+ endPoint <- stringr::str_interp("jobs/queue_size")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- jobs.get = function(uuid)
+ jobs.cancel = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("jobs/${uuid}/cancel")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.create = function(job, ensure_unique_name = "false",
- find_or_create = "false", filters = NULL,
- minimum_script_version = NULL, exclude_script_versions = NULL)
+ jobs.lock = function(uuid)
+ {
+ endPoint <- stringr::str_interp("jobs/${uuid}/lock")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ jobs.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
endPoint <- stringr::str_interp("jobs")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name,
- find_or_create = find_or_create, filters = filters,
- minimum_script_version = minimum_script_version,
- exclude_script_versions = exclude_script_versions)
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(job) > 0)
- body <- jsonlite::toJSON(list(job = job),
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.get = function(uuid)
+ {
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("GET", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.create = function(keepdisk, ensure_unique_name = "false")
+ {
+ endPoint <- stringr::str_interp("keep_disks")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
+
+ if(length(keepdisk) > 0)
+ body <- jsonlite::toJSON(list(keepdisk = keepdisk),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- jobs.update = function(job, uuid)
+ keep_disks.update = function(keepdisk, uuid)
+ {
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ if(length(keepdisk) > 0)
+ body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
+
+ response <- private$REST$http$exec("PUT", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.delete = function(uuid)
+ {
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- NULL
+
+ body <- NULL
+
+ response <- private$REST$http$exec("DELETE", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.ping = function(uuid = NULL, ping_secret,
+ node_uuid = NULL, filesystem_uuid = NULL,
+ service_host = NULL, service_port, service_ssl_flag)
+ {
+ endPoint <- stringr::str_interp("keep_disks/ping")
+ url <- paste0(private$host, endPoint)
+ headers <- list(Authorization = paste("OAuth2", private$token),
+ "Content-Type" = "application/json")
+ queryArgs <- list(uuid = uuid, ping_secret = ping_secret,
+ node_uuid = node_uuid, filesystem_uuid = filesystem_uuid,
+ service_host = service_host, service_port = service_port,
+ service_ssl_flag = service_ssl_flag)
+
+ body <- NULL
+
+ response <- private$REST$http$exec("POST", url, headers, body,
+ queryArgs, private$numRetries)
+ resource <- private$REST$httpParser$parseJSONResponse(response)
+
+ if(!is.null(resource$errors))
+ stop(resource$errors)
+
+ resource
+ },
+
+ keep_disks.list = function(filters = NULL,
+ where = NULL, order = NULL, select = NULL,
+ distinct = NULL, limit = "100", offset = "0",
+ count = "exact")
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("keep_disks")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
- if(length(job) > 0)
- body <- jsonlite::toJSON(list(job = job),
- auto_unbox = TRUE)
- else
- body <- NULL
+ body <- NULL
- response <- private$REST$http$exec("PUT", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.delete = function(uuid)
+ nodes.get = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("DELETE", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.queue = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
+ nodes.create = function(node, ensure_unique_name = "false",
+ assign_slot = NULL)
{
- endPoint <- stringr::str_interp("jobs/queue")
+ endPoint <- stringr::str_interp("nodes")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name,
+ assign_slot = assign_slot)
- body <- NULL
+ if(length(node) > 0)
+ body <- jsonlite::toJSON(list(node = node),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.queue_size = function()
+ nodes.update = function(node, uuid, assign_slot = NULL)
{
- endPoint <- stringr::str_interp("jobs/queue_size")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(assign_slot = assign_slot)
- body <- NULL
+ if(length(node) > 0)
+ body <- jsonlite::toJSON(list(node = node),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.cancel = function(uuid)
+ nodes.delete = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}/cancel")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("DELETE", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- jobs.lock = function(uuid)
+ nodes.ping = function(uuid, ping_secret)
{
- endPoint <- stringr::str_interp("jobs/${uuid}/lock")
+ endPoint <- stringr::str_interp("nodes/${uuid}/ping")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ping_secret = ping_secret)
body <- NULL
resource
},
- jobs.list = function(filters = NULL, where = NULL,
+ nodes.list = function(filters = NULL, where = NULL,
order = NULL, select = NULL, distinct = NULL,
limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("jobs")
+ endPoint <- stringr::str_interp("nodes")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- keep_disks.get = function(uuid)
+ links.get = function(uuid)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("links/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- keep_disks.create = function(keepdisk, ensure_unique_name = "false")
+ links.create = function(link, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("keep_disks")
+ endPoint <- stringr::str_interp("links")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- list(ensure_unique_name = ensure_unique_name)
- if(length(keepdisk) > 0)
- body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ if(length(link) > 0)
+ body <- jsonlite::toJSON(list(link = link),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- keep_disks.update = function(keepdisk, uuid)
+ links.update = function(link, uuid)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("links/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
queryArgs <- NULL
- if(length(keepdisk) > 0)
- body <- jsonlite::toJSON(list(keepdisk = keepdisk),
+ if(length(link) > 0)
+ body <- jsonlite::toJSON(list(link = link),
auto_unbox = TRUE)
else
body <- NULL
resource
},
- keep_disks.delete = function(uuid)
+ links.delete = function(uuid)
{
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
+ endPoint <- stringr::str_interp("links/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
resource
},
- keep_disks.ping = function(uuid = NULL, ping_secret,
- node_uuid = NULL, filesystem_uuid = NULL,
- service_host = NULL, service_port, service_ssl_flag)
+ links.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("keep_disks/ping")
+ endPoint <- stringr::str_interp("links")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(uuid = uuid, ping_secret = ping_secret,
- node_uuid = node_uuid, filesystem_uuid = filesystem_uuid,
- service_host = service_host, service_port = service_port,
- service_ssl_flag = service_ssl_flag)
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
+ response <- private$REST$http$exec("GET", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
resource
},
- keep_disks.list = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ links.get_permissions = function(uuid)
{
- endPoint <- stringr::str_interp("keep_disks")
+ endPoint <- stringr::str_interp("permissions/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
resource
},
- nodes.get = function(uuid)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.create = function(node, ensure_unique_name = "false",
- assign_slot = NULL)
- {
- endPoint <- stringr::str_interp("nodes")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name,
- assign_slot = assign_slot)
-
- if(length(node) > 0)
- body <- jsonlite::toJSON(list(node = node),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.update = function(node, uuid, assign_slot = NULL)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(assign_slot = assign_slot)
-
- if(length(node) > 0)
- body <- jsonlite::toJSON(list(node = node),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.ping = function(uuid, ping_secret)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}/ping")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ping_secret = ping_secret)
-
- body <- NULL
-
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("nodes")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
repositories.get = function(uuid)
{
endPoint <- stringr::str_interp("repositories/${uuid}")
projects / arvados.git / blobdiff