+<%# Copyright (C) The Arvados Authors. All rights reserved.
+
+SPDX-License-Identifier: AGPL-3.0 %>
+
<%
collections = [current_obj.outputs, current_obj.docker_image].flatten.compact.uniq
collections_pdhs = collections.select {|x| !CollectionsHelper.match(x).nil?}.uniq.compact
collections_uuids = collections - collections_pdhs
preload_collections_for_objects collections_uuids if collections_uuids.any?
- preload_for_pdhs collections_pdhs if collections_pdhs.any?
+ preload_links_for_objects collections_uuids if collections_uuids.any?
preload_objects_for_dataclass(Repository, [current_obj.repository], :name) if current_obj.repository
+
+ # if container_X, preload mounted collections
+ if @object.is_a? Container or @object.is_a? ContainerRequest
+ # get any collections in mounts
+ mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
+ input_obj = mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content]
+ if input_obj
+ input_obj.to_s.scan(/([0-9a-f]{32}\+\d+)/).each {|cs| collections_pdhs += cs}
+ end
+
+ command = current_obj.send(:command) if current_obj.respond_to?(:command)
+ if command
+ command.to_s.scan(/([0-9a-f]{32}\+\d+)/).each {|cs| collections_pdhs += cs}
+ end
+ end
+
+ collections_pdhs.compact.uniq
+ preload_for_pdhs collections_pdhs if collections_pdhs.any?
+ preload_links_for_objects collections_pdhs if collections_pdhs.any?
%>
<div class="container">
<div class="row">
- <div class="col-md-5">
+ <div class="col-md-6" style="overflow-x: auto">
<% if current_obj.uuid.nil? %>
No <%= current_obj.title %> has been submitted yet.
<% else %>
- <table>
- <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid, :priority] %>
+ <table class="table table-condensed">
+ <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid] %>
<% keys << :log_collection if @object.uuid != current_obj.uuid %>
<% keys << :outputs %>
<% keys.each do |k| %>
<%= render_localized_date(val) %>
<% elsif k == :outputs and val.any? %>
<% if val.size == 1 %>
- <%= link_to_arvados_object_if_readable(val[0], 'Output data not available', friendly_name: true) %>
+ <%= link_to_arvados_object_if_readable(val[0], "#{val[0]} (Unavailable)", friendly_name: true) %>
<% else %>
<%= render partial: 'work_units/show_outputs', locals: {id: current_obj.uuid, outputs: val, align:""} %>
<% end %>
<% end %>
</div>
<div class="col-md-6">
- <table>
+ <table class="table table-condensed">
<% # link to repo tree/file only if the repo is readable and the commit is a sha1
repo = (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
current_obj.repository and
repo = nil unless repo.andand.http_fetch_url
%>
<% [:script, :repository, :script_version, :supplied_script_version, :nondeterministic,
- :command, :cwd, :environment, :mounts, :output_path].each do |k| %>
+ :priority, :runtime_constraints, :requesting_container_uuid].each do |k| %>
<% val = current_obj.send(k) if current_obj.respond_to?(k) %>
<% if val %>
- <tr>
+ <tr valign="top">
<td style="padding-right: 1em">
<%= k.to_s %>:
</td>
<%= link_to val, show_repository_blob_path(id: repo.uuid, commit: current_obj.script_version, path: 'crunch_scripts/'+current_obj.script) %>
<% elsif repo and k == :script_version %>
<%= link_to val, show_repository_commit_path(id: repo.uuid, commit: current_obj.script_version) %>
+ <% elsif k == :runtime_constraints and val.any? %>
+ <%= render partial: 'work_units/show_table_data', locals: {id: current_obj.uuid, name: k, data_map: val} %>
+ <% elsif k.to_s.end_with? 'uuid' %>
+ <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
<% else %>
<%= val %>
<% end %>
</tr>
<% end %>
<% end %>
+
+ <%
+ mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
+ mount_wf = mounts.andand[:"/var/lib/cwl/workflow.json"]
+ mount_wf = mount_wf[5..-1] if mount_wf.andand.is_a?(String) and mount_wf.start_with?('keep:')
+ mount_wf_cls = resource_class_for_uuid(mount_wf) if mount_wf
+ %>
+ <tr>
+ <% if mount_wf_cls == Collection %>
+ <td style="padding-right: 1em">
+ workflow.json:
+ </td>
+ <td>
+ <%= link_to_if_arvados_object mount_wf, friendly_name: true %>
+ </td>
+ <% end %>
+ </tr>
+
<% if current_obj.runtime_constraints.andand[:docker_image] and current_obj.docker_image %>
<tr>
<td style="padding-right: 1em">
<% end %>
</table>
</div>
+
+ <div class="col-md-12">
+ <table class="table table-condensed" style="table-layout:fixed;">
+ <col width="15%" />
+ <col width="85%" />
+ <% [:command].each do |k| %>
+ <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
+ <% if val %>
+ <tr>
+ <td valign="top">
+ <%= k.to_s %>:
+ </td>
+ <td style="word-wrap: break-all;">
+ <% if k == :command %>
+ <% val = JSON.pretty_generate(val) %>
+ <%= render partial: 'show_text_with_locators', locals: {data_height: 200, text_data: val} %>
+ <% else %>
+ <%= val %>
+ <% end %>
+ </td>
+ </tr>
+ <% end %>
+ <% end %>
+
+ <%
+ mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
+ input_obj = mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content]
+ mnt_inputs = JSON.pretty_generate(input_obj) if input_obj
+ %>
+ <% if mnt_inputs %>
+ <tr>
+ <td valign="top">
+ cwl.input.json:
+ </td>
+ <td style="word-wrap: break-all;">
+ <%= render partial: 'show_text_with_locators', locals: {data_height: 400, text_data: mnt_inputs} %>
+ </td>
+ </tr>
+ <% end %>
+ </table>
+ </div>
+
</div>
<% if current_obj.parameters and !current_obj.parameters.empty? %>
<div class="row">
- <div class="col-md-6">
+ <div class="col-md-12">
<p>script_parameters:</p>
<pre><%= JSON.pretty_generate(current_obj.parameters) rescue nil %></pre>
</div>
projects / arvados.git / blobdiff