9701: Merge branch 'master' into 9701-collection-pack-small-files-alt

[arvados.git] / sdk / cwl / arvados_cwl / __init__.py

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 46850b388961924fb46b8fbc5f1e6c1fb703abaa..c90f8902684304b400cc7ece97068a8e6b094000 100644 (file)
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -32,7 +32,7 @@ from .perf import Perf
 from .pathmapper import FinalOutputPathMapper
 
 from cwltool.pack import pack
-from cwltool.process import shortname, UnsupportedRequirement
+from cwltool.process import shortname, UnsupportedRequirement, getListing
 from cwltool.pathmapper import adjustFileObjs, adjustDirObjs
 from cwltool.draft2tool import compute_checksums
 from arvados.api import OrderedJsonModel
@@ -365,6 +365,7 @@ class ArvCwlRunner(object):
             self.make_output_collection(self.output_name, self.final_output)
 
         if kwargs.get("compute_checksum"):
+            adjustDirObjs(self.final_output, partial(getListing, self.fs_access))
             adjustFileObjs(self.final_output, partial(compute_checksums, self.fs_access))
 
         return self.final_output