Update tests related to make_output_collection

[arvados.git] / sdk / cwl / tests / test_make_output.py

diff --git a/sdk/cwl/tests/test_make_output.py b/sdk/cwl/tests/test_make_output.py
index 9002bb1dfcc5a9b80b277256a408ec2d2f40769d..dd1da0b524429bb2038fe56fab86b8f2abe7c6b7 100644 (file)
--- a/sdk/cwl/tests/test_make_output.py
+++ b/sdk/cwl/tests/test_make_output.py
@@ -23,6 +23,13 @@ class TestMakeOutput(unittest.TestCase):
         self.api = mock.MagicMock()
         self.api._rootDesc = get_rootDesc()
 
+    def tearDown(self):
+        root_logger = logging.getLogger('')
+
+        # Remove existing RuntimeStatusLoggingHandlers if they exist
+        handlers = [h for h in root_logger.handlers if not isinstance(h, arvados_cwl.executor.RuntimeStatusLoggingHandler)]
+        root_logger.handlers = handlers
+
     @mock.patch("arvados.collection.Collection")
     @mock.patch("arvados.collection.CollectionReader")
     def test_make_output_collection(self, reader, col):
@@ -43,7 +50,7 @@ class TestMakeOutput(unittest.TestCase):
         final.open.return_value = openmock
         openmock.__enter__.return_value = cwlout
 
-        _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "tag0,tag1,tag2", {
+        _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "tag0,tag1,tag2", {}, {
             "foo": {
                 "class": "File",
                 "location": "keep:99999999999999999999999999999991+99/foo.txt",
@@ -60,7 +67,7 @@ class TestMakeOutput(unittest.TestCase):
 
         final.copy.assert_has_calls([mock.call('bar.txt', 'baz.txt', overwrite=False, source_collection=readermock)])
         final.copy.assert_has_calls([mock.call('foo.txt', 'foo.txt', overwrite=False, source_collection=readermock)])
-        final.save_new.assert_has_calls([mock.call(ensure_unique_name=True, name='Test output', owner_uuid='zzzzz-j7d0g-zzzzzzzzzzzzzzz', storage_classes=['foo'])])
+        final.save_new.assert_has_calls([mock.call(ensure_unique_name=True, name='Test output', owner_uuid='zzzzz-j7d0g-zzzzzzzzzzzzzzz', properties={}, storage_classes=['foo'])])
         self.assertEqual("""{
     "bar": {
         "basename": "baz.txt",
@@ -95,35 +102,35 @@ class TestMakeOutput(unittest.TestCase):
         reader.return_value = readermock
 
         # This output describes a single file listed in 2 different directories
-        _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "", { 'out': [
+        _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "", {}, { 'out': [
         {
-            'basename': 'testdir1', 
+            'basename': 'testdir1',
             'listing': [
-                { 
-                    'basename': 'test.txt', 
-                    'nameroot': 'test', 
-                    'nameext': '.txt', 
-                    'location': 'keep:99999999999999999999999999999991+99/test.txt', 
-                    'class': 'File', 
+                {
+                    'basename': 'test.txt',
+                    'nameroot': 'test',
+                    'nameext': '.txt',
+                    'location': 'keep:99999999999999999999999999999991+99/test.txt',
+                    'class': 'File',
                     'size': 16
                 }
-            ], 
+            ],
             'location': '_:99999999999999999999999999999992+99',
             'class': 'Directory'
-        }, 
+        },
         {
-            'basename': 'testdir2', 
+            'basename': 'testdir2',
             'listing': [
                 {
-                    'basename': 'test.txt', 
-                    'nameroot': 'test', 
-                    'nameext': '.txt', 
-                    'location': 'keep:99999999999999999999999999999991+99/test.txt', 
-                    'class': 
-                    'File', 
+                    'basename': 'test.txt',
+                    'nameroot': 'test',
+                    'nameext': '.txt',
+                    'location': 'keep:99999999999999999999999999999991+99/test.txt',
+                    'class':
+                    'File',
                     'size': 16
                 }
-            ], 
+            ],
             'location': '_:99999999999999999999999999999993+99',
             'class': 'Directory'
         }]})
@@ -145,30 +152,30 @@ class TestMakeOutput(unittest.TestCase):
         reader.return_value = readermock
 
         # This output describes two literals with the same basename
-        _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "",  [
-        { 
-            'lit': 
+        _, runner.final_output_collection = runner.make_output_collection("Test output", ["foo"], "",  {}, [
+        {
+            'lit':
             {
-                'basename': 'a_file', 
-                'nameext': '', 
-                'nameroot': 'a_file', 
-                'location': '_:f168fc0c-4291-40aa-a04e-366d57390560', 
-                'class': 'File', 
+                'basename': 'a_file',
+                'nameext': '',
+                'nameroot': 'a_file',
+                'location': '_:f168fc0c-4291-40aa-a04e-366d57390560',
+                'class': 'File',
                 'contents': 'Hello file literal.'
             }
         },
         {
-            'lit': 
+            'lit':
             {
-                'basename': 'a_file', 
-                'nameext': '', 
-                'nameroot': 'a_file', 
-                'location': '_:1728da8f-c64e-4a3e-b2e2-1ee356be7bc8', 
-                'class': 'File', 
+                'basename': 'a_file',
+                'nameext': '',
+                'nameroot': 'a_file',
+                'location': '_:1728da8f-c64e-4a3e-b2e2-1ee356be7bc8',
+                'class': 'File',
                 'contents': 'Hello file literal.'
             }
         }])
 
         # Check that the file name conflict is resolved and open is called for both
         final.open.assert_any_call("a_file", "wb")
-        final.open.assert_any_call("a_file_2", "wb")
\ No newline at end of file
+        final.open.assert_any_call("a_file_2", "wb")