require 'test_helper'
require 'salvage_collection'
+require 'shellwords'
# Valid manifest_text
TEST_MANIFEST = ". 341dabea2bd78ad0d6fc3f5b926b450e+85626+Ad391622a17f61e4a254eda85d1ca751c4f368da9@55e076ce 0:85626:brca2-hg19.fa\n. d7321a918923627c972d8f8080c07d29+82570+A22e0a1d9b9bc85c848379d98bedc64238b0b1532@55e076ce 0:82570:brca1-hg19.fa\n"
# 341dabea2bd78ad0d6fc3f5b926b450e+abc
# 341dabea2bd78ad0d6fc3f5b926abcdf
# Expectation: All these locators are preserved in salvaged_data
-BAD_MANIFEST = "faaaafaafaafaabd78ad0d6fc3f5b926b450e+foo bar-baabaabaabd78ad0d6fc3f5b926b450e bad12345dae58ad0d6fc3f5b926b450e+ 341dabea2bd78ad0d6fc3f5b926b450e+abc 341dabea2bd78ad0d6fc3f5b926abcdf 0:85626:brca2-hg19.fa\n. abcdabea2bd78ad0d6fc3f5b926b450e+1000 0:1000:brca-hg19.fa\n. d7321a918923627c972d8f8080c07d29+2000+A22e0a1d9b9bc85c848379d98bedc64238b0b1532@55e076ce 0:2000:brca1-hg19.fa\n"
-
-# Mock arv_put
-module SalvageCollection
- def self.salvage_collection_arv_put(cmd)
- file_contents = File.open(cmd.split[-1], "r").read
- # simulate arv-put error when it is 'user_agreement'
- if file_contents.include? 'GNU_General_Public_License'
- raise("Error during arv-put")
- else
- ". " +
- Digest::MD5.hexdigest(file_contents) + "+" + file_contents.length.to_s +
- " 0:" + file_contents.length.to_s + ":invalid_manifest_text.txt\n"
- end
- end
-end
+BAD_MANIFEST = "faafaafaabd78ad0d6fc3f5b926b450e+foo bar-baabaabaabd78ad0d6fc3f5b926b450e_bad12345dae58ad0d6fc3f5b926b450e+ 341dabea2bd78ad0d6fc3f5b926b450e+abc 341dabea2bd78ad0d6fc3f5b926abcdf 0:85626:brca2-hg19.fa\n. abcdabea2bd78ad0d6fc3f5b926b450e+1000 0:1000:brca-hg19.fa\n. d7321a918923627c972d8f8080c07d29+2000+A22e0a1d9b9bc85c848379d98bedc64238b0b1532@55e076ce 0:2000:brca1-hg19.fa\n"
class SalvageCollectionTest < ActiveSupport::TestCase
include SalvageCollection
# arv-put needs ARV env variables
ENV['ARVADOS_API_HOST'] = 'unused_by_test'
ENV['ARVADOS_API_TOKEN'] = 'unused_by_test'
+ @backtick_mock_failure = false
end
teardown do
ENV['ARVADOS_API_TOKEN'] = ''
end
+ def ` cmd # mock Kernel `
+ assert_equal 'arv-put', cmd.shellsplit[0]
+ if @backtick_mock_failure
+ # run a process so $? indicates failure
+ return super 'false'
+ end
+ # run a process so $? indicates success
+ super 'true'
+ file_contents = File.open(cmd.shellsplit[-1], "r").read
+ ". " +
+ Digest::MD5.hexdigest(file_contents) + "+" + file_contents.length.to_s +
+ " 0:" + file_contents.length.to_s + ":invalid_manifest_text.txt\n"
+ end
+
test "salvage test collection with valid manifest text" do
# create a collection to test salvaging
src_collection = Collection.new name: "test collection", manifest_text: TEST_MANIFEST
src_collection.save!
# salvage this collection
- SalvageCollection.salvage_collection src_collection.uuid, 'test salvage collection - see #6277, #6859'
+ salvage_collection src_collection.uuid, 'test salvage collection - see #6277, #6859'
# verify the updated src_collection data
updated_src_collection = Collection.find_by_uuid src_collection.uuid
test "salvage collection with no uuid required argument" do
e = assert_raises RuntimeError do
- SalvageCollection.salvage_collection nil
+ salvage_collection nil
end
end
test "salvage collection with bogus uuid" do
e = assert_raises RuntimeError do
- SalvageCollection.salvage_collection 'bogus-uuid'
+ salvage_collection 'bogus-uuid'
end
assert_equal "No collection found for bogus-uuid.", e.message
end
e = assert_raises RuntimeError do
ENV['ARVADOS_API_HOST'] = ''
ENV['ARVADOS_API_TOKEN'] = ''
- SalvageCollection.salvage_collection collections('user_agreement').uuid
+ salvage_collection collections('user_agreement').uuid
end
assert_equal "ARVADOS environment variables missing. Please set your admin user credentials as ARVADOS environment variables.", e.message
end
test "salvage collection with error during arv-put" do
# try to salvage collection while mimicking error during arv-put
+ @backtick_mock_failure = true
e = assert_raises RuntimeError do
- SalvageCollection.salvage_collection collections('user_agreement').uuid
+ salvage_collection collections('user_agreement').uuid
end
- assert_equal "Error during arv-put", e.message
+ assert_match /Error during arv-put: pid \d+ exit \d+ \(cmd was \"arv-put .*\"\)/, e.message
end
# This test uses BAD_MANIFEST, which has the following flaws:
# 341dabea2bd78ad0d6fc3f5b926abcdf
# Expectation: All these locators are preserved in salvaged_data
test "invalid locators preserved during salvaging" do
- locator_data = SalvageCollection.salvage_collection_locator_data BAD_MANIFEST
- assert_equal 7, locator_data[0].size
- assert_equal false, locator_data[0].include?("foo-faafaafaabd78ad0d6fc3f5b926b450e+foo")
- assert_equal true, locator_data[0].include?("faafaafaabd78ad0d6fc3f5b926b450e")
- assert_equal false, locator_data[0].include?("bar-baabaabaabd78ad0d6fc3f5b926b450e")
- assert_equal true, locator_data[0].include?("baabaabaabd78ad0d6fc3f5b926b450e")
- assert_equal false, locator_data[0].include?("bad12345dae58ad0d6fc3f5b926b450e+")
- assert_equal true, locator_data[0].include?("bad12345dae58ad0d6fc3f5b926b450e")
- assert_equal false, locator_data[0].include?("341dabea2bd78ad0d6fc3f5b926b450e+abc")
- assert_equal true, locator_data[0].include?("341dabea2bd78ad0d6fc3f5b926b450e")
- assert_equal true, locator_data[0].include?("341dabea2bd78ad0d6fc3f5b926abcdf")
- assert_equal true, locator_data[0].include?("abcdabea2bd78ad0d6fc3f5b926b450e+1000")
- assert_equal true, locator_data[0].include?("d7321a918923627c972d8f8080c07d29+2000")
- assert_equal true, locator_data[1].eql?(1000 + 2000) # size
+ locator_data = salvage_collection_locator_data BAD_MANIFEST
+ assert_equal \
+ ["faafaafaabd78ad0d6fc3f5b926b450e",
+ "baabaabaabd78ad0d6fc3f5b926b450e",
+ "bad12345dae58ad0d6fc3f5b926b450e",
+ "341dabea2bd78ad0d6fc3f5b926b450e",
+ "341dabea2bd78ad0d6fc3f5b926abcdf",
+ "abcdabea2bd78ad0d6fc3f5b926b450e+1000",
+ "d7321a918923627c972d8f8080c07d29+2000",
+ ], locator_data[0]
+ assert_equal 1000+2000, locator_data[1]
end
test "salvage a collection with invalid manifest text" do
src_collection.save!(validate: false)
# salvage this collection
- SalvageCollection.salvage_collection src_collection.uuid, 'test salvage collection - see #6277, #6859'
+ salvage_collection src_collection.uuid, 'test salvage collection - see #6277, #6859'
# verify the updated src_collection data
updated_src_collection = Collection.find_by_uuid src_collection.uuid
projects / arvados.git / blobdiff