15964: Remove qr1hi from a few more places. Delete unused includes.

[arvados.git] / doc / _includes / _run_command_foreach_example.liquid

diff --git a/doc/_includes/_run_command_foreach_example.liquid b/doc/_includes/_run_command_foreach_example.liquid
deleted file mode 100644 (file)
index 8e3dd71..0000000
--- a/doc/_includes/_run_command_foreach_example.liquid
+++ /dev/null
@@ -1,46 +0,0 @@
-{% comment %}
-Copyright (C) The Arvados Authors. All rights reserved.
-
-SPDX-License-Identifier: CC-BY-SA-3.0
-{% endcomment %}
-
-{
-    "name":"run-command example pipeline",
-    "components":{
-        "bwa-mem": {
-            "script": "run-command",
-            "script_version": "master",
-            "repository": "arvados",
-            "script_parameters": {
-                "command": [
-                    "bwa",
-                    "mem",
-                    "-t",
-                    "$(node.cores)",
-                    "$(glob $(dir $(reference_collection))/*.fasta)",
-                    {
-                        "foreach": "read_pair",
-                        "command": "$(read_pair)"
-                    }
-                ],
-                "task.stdout": "$(basename $(glob $(dir $(sample))/*_1.fastq)).sam",
-                "task.foreach": ["sample_subdir", "read_pair"],
-                "reference_collection": {
-                    "required": true,
-                    "dataclass": "Collection"
-                },
-                "sample": {
-                    "required": true,
-                    "dataclass": "Collection"
-                },
-                "sample_subdir": "$(dir $(sample))",
-                "read_pair": {
-                    "value": {
-                        "group": "sample_subdir",
-                        "regex": "(.*)_[12]\\.fastq(\\.gz)?$"
-                    }
-                }
-            }
-        }
-    }
-}