import (
"bytes"
+ "context"
"encoding/json"
"errors"
"flag"
"io"
"io/ioutil"
"log"
+ "net"
+ "net/http"
"os"
"os/exec"
"os/signal"
+ "os/user"
"path"
"path/filepath"
"regexp"
"time"
"git.arvados.org/arvados.git/lib/cmd"
+ "git.arvados.org/arvados.git/lib/config"
"git.arvados.org/arvados.git/lib/crunchstat"
"git.arvados.org/arvados.git/sdk/go/arvados"
"git.arvados.org/arvados.git/sdk/go/arvadosclient"
+ "git.arvados.org/arvados.git/sdk/go/ctxlog"
"git.arvados.org/arvados.git/sdk/go/keepclient"
"git.arvados.org/arvados.git/sdk/go/manifest"
- "golang.org/x/net/context"
+ "golang.org/x/sys/unix"
)
type command struct{}
var Command = command{}
+// ConfigData contains environment variables and (when needed) cluster
+// configuration, passed from dispatchcloud to crunch-run on stdin.
+type ConfigData struct {
+ Env map[string]string
+ KeepBuffers int
+ Cluster *arvados.Cluster
+}
+
// IArvadosClient is the minimal Arvados API methods used by crunch-run.
type IArvadosClient interface {
Create(resourceType string, parameters arvadosclient.Dict, output interface{}) error
// NewLogWriter is a factory function to create a new log writer.
type NewLogWriter func(name string) (io.WriteCloser, error)
-type RunArvMount func(args []string, tok string) (*exec.Cmd, error)
+type RunArvMount func(cmdline []string, tok string) (*exec.Cmd, error)
type MkTempDir func(string, string) (string, error)
finalState string
parentTemp string
+ keepstoreLogger io.WriteCloser
+ keepstoreLogbuf *bufThenWrite
statLogger io.WriteCloser
statReporter *crunchstat.Reporter
hoststatLogger io.WriteCloser
enableMemoryLimit bool
enableNetwork string // one of "default" or "always"
networkMode string // "none", "host", or "" -- passed through to executor
+ brokenNodeHook string // script to run if node appears to be broken
arvMountLog *ThrottledLogger
containerWatchdogInterval time.Duration
"(?ms).*oci runtime error.*starting container process.*container init.*mounting.*to rootfs.*no such file or directory.*",
"(?ms).*grpc: the connection is unavailable.*",
}
-var brokenNodeHook *string = flag.String("broken-node-hook", "", "Script to run if node is detected to be broken (for example, Docker daemon is not running)")
func (runner *ContainerRunner) runBrokenNodeHook() {
- if *brokenNodeHook == "" {
+ if runner.brokenNodeHook == "" {
path := filepath.Join(lockdir, brokenfile)
runner.CrunchLog.Printf("Writing %s to mark node as broken", path)
f, err := os.OpenFile(path, os.O_CREATE|os.O_RDWR, 0700)
}
f.Close()
} else {
- runner.CrunchLog.Printf("Running broken node hook %q", *brokenNodeHook)
+ runner.CrunchLog.Printf("Running broken node hook %q", runner.brokenNodeHook)
// run killme script
- c := exec.Command(*brokenNodeHook)
+ c := exec.Command(runner.brokenNodeHook)
c.Stdout = runner.CrunchLog
c.Stderr = runner.CrunchLog
err := c.Run()
return imageID, nil
}
-func (runner *ContainerRunner) ArvMountCmd(arvMountCmd []string, token string) (c *exec.Cmd, err error) {
- c = exec.Command("arv-mount", arvMountCmd...)
+func (runner *ContainerRunner) ArvMountCmd(cmdline []string, token string) (c *exec.Cmd, err error) {
+ c = exec.Command(cmdline[0], cmdline[1:]...)
// Copy our environment, but override ARVADOS_API_TOKEN with
// the container auth token.
return nil, err
}
runner.arvMountLog = NewThrottledLogger(w)
+ scanner := logScanner{
+ Patterns: []string{
+ "Keep write error",
+ "Block not found error",
+ "Unhandled exception during FUSE operation",
+ },
+ ReportFunc: runner.reportArvMountWarning,
+ }
c.Stdout = runner.arvMountLog
- c.Stderr = io.MultiWriter(runner.arvMountLog, os.Stderr)
+ c.Stderr = io.MultiWriter(runner.arvMountLog, os.Stderr, &scanner)
runner.CrunchLog.Printf("Running %v", c.Args)
pdhOnly := true
tmpcount := 0
arvMountCmd := []string{
+ "arv-mount",
"--foreground",
- "--allow-other",
"--read-write",
"--storage-classes", strings.Join(runner.Container.OutputStorageClasses, ","),
fmt.Sprintf("--crunchstat-interval=%v", runner.statInterval.Seconds())}
+ if _, isdocker := runner.executor.(*dockerExecutor); isdocker {
+ arvMountCmd = append(arvMountCmd, "--allow-other")
+ }
+
if runner.Container.RuntimeConstraints.KeepCacheRAM > 0 {
arvMountCmd = append(arvMountCmd, "--file-cache", fmt.Sprintf("%d", runner.Container.RuntimeConstraints.KeepCacheRAM))
}
sort.Strings(binds)
for _, bind := range binds {
- mnt, ok := runner.Container.Mounts[bind]
- if !ok {
+ mnt, notSecret := runner.Container.Mounts[bind]
+ if !notSecret {
mnt = runner.SecretMounts[bind]
}
if bind == "stdout" || bind == "stderr" {
}
} else {
src = fmt.Sprintf("%s/tmp%d", runner.ArvMountPoint, tmpcount)
- arvMountCmd = append(arvMountCmd, "--mount-tmp")
- arvMountCmd = append(arvMountCmd, fmt.Sprintf("tmp%d", tmpcount))
+ arvMountCmd = append(arvMountCmd, "--mount-tmp", fmt.Sprintf("tmp%d", tmpcount))
tmpcount++
}
if mnt.Writable {
if err != nil {
return nil, fmt.Errorf("writing temp file: %v", err)
}
- if strings.HasPrefix(bind, runner.Container.OutputPath+"/") {
+ if strings.HasPrefix(bind, runner.Container.OutputPath+"/") && (notSecret || runner.Container.Mounts[runner.Container.OutputPath].Kind != "collection") {
+ // In most cases, if the container
+ // specifies a literal file inside the
+ // output path, we copy it into the
+ // output directory (either a mounted
+ // collection or a staging area on the
+ // host fs). If it's a secret, it will
+ // be skipped when copying output from
+ // staging to Keep later.
copyFiles = append(copyFiles, copyFile{tmpfn, runner.HostOutputDir + bind[len(runner.Container.OutputPath):]})
} else {
+ // If a secret is outside OutputPath,
+ // we bind mount the secret file
+ // directly just like other mounts. We
+ // also use this strategy when a
+ // secret is inside OutputPath but
+ // OutputPath is a live collection, to
+ // avoid writing the secret to
+ // Keep. Attempting to remove a
+ // bind-mounted secret file from
+ // inside the container will return a
+ // "Device or resource busy" error
+ // that might not be handled well by
+ // the container, which is why we
+ // don't use this strategy when
+ // OutputPath is a staging directory.
bindmounts[bind] = bindmount{HostPath: tmpfn, ReadOnly: true}
}
}
if pdhOnly {
- arvMountCmd = append(arvMountCmd, "--mount-by-pdh", "by_id")
+ // If we are only mounting collections by pdh, make
+ // sure we don't subscribe to websocket events to
+ // avoid putting undesired load on the API server
+ arvMountCmd = append(arvMountCmd, "--mount-by-pdh", "by_id", "--disable-event-listening")
} else {
arvMountCmd = append(arvMountCmd, "--mount-by-id", "by_id")
}
+ // the by_uuid mount point is used by singularity when writing
+ // out docker images converted to SIF
arvMountCmd = append(arvMountCmd, "--mount-by-id", "by_uuid")
arvMountCmd = append(arvMountCmd, runner.ArvMountPoint)
runner.executorStdin = stdin
runner.executorStdout = stdout
runner.executorStderr = stderr
+
+ if runner.Container.RuntimeConstraints.CUDA.DeviceCount > 0 {
+ nvidiaModprobe(runner.CrunchLog)
+ }
+
return runner.executor.Create(containerSpec{
- Image: imageID,
- VCPUs: runner.Container.RuntimeConstraints.VCPUs,
- RAM: ram,
- WorkingDir: workdir,
- Env: env,
- BindMounts: bindmounts,
- Command: runner.Container.Command,
- EnableNetwork: enableNetwork,
- NetworkMode: runner.networkMode,
- CgroupParent: runner.setCgroupParent,
- Stdin: stdin,
- Stdout: stdout,
- Stderr: stderr,
+ Image: imageID,
+ VCPUs: runner.Container.RuntimeConstraints.VCPUs,
+ RAM: ram,
+ WorkingDir: workdir,
+ Env: env,
+ BindMounts: bindmounts,
+ Command: runner.Container.Command,
+ EnableNetwork: enableNetwork,
+ CUDADeviceCount: runner.Container.RuntimeConstraints.CUDA.DeviceCount,
+ NetworkMode: runner.networkMode,
+ CgroupParent: runner.setCgroupParent,
+ Stdin: stdin,
+ Stdout: stdout,
+ Stderr: stderr,
})
}
}
runner.ExitCode = &exitcode
+ extra := ""
+ if exitcode&0x80 != 0 {
+ // Convert raw exit status (0x80 + signal number) to a
+ // string to log after the code, like " (signal 101)"
+ // or " (signal 9, killed)"
+ sig := syscall.WaitStatus(exitcode).Signal()
+ if name := unix.SignalName(sig); name != "" {
+ extra = fmt.Sprintf(" (signal %d, %s)", sig, name)
+ } else {
+ extra = fmt.Sprintf(" (signal %d)", sig)
+ }
+ }
+ runner.CrunchLog.Printf("Container exited with status code %d%s", exitcode, extra)
+
var returnErr error
if err = runner.executorStdin.Close(); err != nil {
err = fmt.Errorf("error closing container stdin: %s", err)
}
}
+func (runner *ContainerRunner) reportArvMountWarning(pattern, text string) {
+ var updated arvados.Container
+ err := runner.DispatcherArvClient.Update("containers", runner.Container.UUID, arvadosclient.Dict{
+ "container": arvadosclient.Dict{
+ "runtime_status": arvadosclient.Dict{
+ "warning": "arv-mount: " + pattern,
+ "warningDetail": text,
+ },
+ },
+ }, &updated)
+ if err != nil {
+ runner.CrunchLog.Printf("error updating container runtime_status: %s", err)
+ }
+}
+
// CaptureOutput saves data from the container's output directory if
// needed, and updates the container output accordingly.
func (runner *ContainerRunner) CaptureOutput(bindmounts map[string]bindmount) error {
if umnterr != nil {
runner.CrunchLog.Printf("Error unmounting: %v", umnterr)
+ runner.ArvMount.Process.Kill()
} else {
// If arv-mount --unmount gets stuck for any reason, we
// don't want to wait for it forever. Do Wait() in a goroutine
runner.CrunchLog.Immediate = log.New(os.Stderr, runner.Container.UUID+" ", 0)
}()
+ if runner.keepstoreLogger != nil {
+ // Flush any buffered logs from our local keepstore
+ // process. Discard anything logged after this point
+ // -- it won't end up in the log collection, so
+ // there's no point writing it to the collectionfs.
+ runner.keepstoreLogbuf.SetWriter(io.Discard)
+ runner.keepstoreLogger.Close()
+ runner.keepstoreLogger = nil
+ }
+
if runner.LogsPDH != nil {
// If we have already assigned something to LogsPDH,
// we must be closing the re-opened log, which won't
// -- it exists only to send logs to other channels.
return nil
}
+
saved, err := runner.saveLogCollection(true)
if err != nil {
return fmt.Errorf("error saving log collection: %s", err)
// Run the full container lifecycle.
func (runner *ContainerRunner) Run() (err error) {
runner.CrunchLog.Printf("crunch-run %s started", cmd.Version.String())
- runner.CrunchLog.Printf("Executing container '%s'", runner.Container.UUID)
+ runner.CrunchLog.Printf("%s", currentUserAndGroups())
+ v, _ := exec.Command("arv-mount", "--version").CombinedOutput()
+ runner.CrunchLog.Printf("Using FUSE mount: %s", v)
+ runner.CrunchLog.Printf("Using container runtime: %s", runner.executor.Runtime())
+ runner.CrunchLog.Printf("Executing container: %s", runner.Container.UUID)
hostname, hosterr := os.Hostname()
if hosterr != nil {
}
func (command) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
+ log := log.New(stderr, "", 0)
flags := flag.NewFlagSet(prog, flag.ContinueOnError)
statInterval := flags.Duration("crunchstat-interval", 10*time.Second, "sampling period for periodic resource usage reporting")
cgroupRoot := flags.String("cgroup-root", "/sys/fs/cgroup", "path to sysfs cgroup tree")
cgroupParentSubsystem := flags.String("cgroup-parent-subsystem", "", "use current cgroup for given subsystem as parent cgroup for container")
caCertsPath := flags.String("ca-certs", "", "Path to TLS root certificates")
detach := flags.Bool("detach", false, "Detach from parent process and run in the background")
- stdinEnv := flags.Bool("stdin-env", false, "Load environment variables from JSON message on stdin")
+ stdinConfig := flags.Bool("stdin-config", false, "Load config and environment variables from JSON message on stdin")
+ configFile := flags.String("config", arvados.DefaultConfigFile, "filename of cluster config file to try loading if -stdin-config=false (default is $ARVADOS_CONFIG)")
sleep := flags.Duration("sleep", 0, "Delay before starting (testing use only)")
kill := flags.Int("kill", -1, "Send signal to an existing crunch-run process for given UUID")
list := flags.Bool("list", false, "List UUIDs of existing crunch-run processes")
networkMode := flags.String("container-network-mode", "default", `Docker network mode for container (use any argument valid for docker --net)`)
memprofile := flags.String("memprofile", "", "write memory profile to `file` after running container")
runtimeEngine := flags.String("runtime-engine", "docker", "container runtime: docker or singularity")
+ brokenNodeHook := flags.String("broken-node-hook", "", "script to run if node is detected to be broken (for example, Docker daemon is not running)")
flags.Duration("check-containerd", 0, "Ignored. Exists for compatibility with older versions.")
ignoreDetachFlag := false
ignoreDetachFlag = true
}
- if err := flags.Parse(args); err == flag.ErrHelp {
- return 0
- } else if err != nil {
- log.Print(err)
- return 1
- }
-
- if *stdinEnv && !ignoreDetachFlag {
- // Load env vars on stdin if asked (but not in a
- // detached child process, in which case stdin is
- // /dev/null).
- err := loadEnv(os.Stdin)
- if err != nil {
- log.Print(err)
- return 1
- }
+ if ok, code := cmd.ParseFlags(flags, prog, args, "container-uuid", stderr); !ok {
+ return code
+ } else if !*list && flags.NArg() != 1 {
+ fmt.Fprintf(stderr, "missing required argument: container-uuid (try -help)\n")
+ return 2
}
containerUUID := flags.Arg(0)
switch {
case *detach && !ignoreDetachFlag:
- return Detach(containerUUID, prog, args, os.Stdout, os.Stderr)
+ return Detach(containerUUID, prog, args, os.Stdin, os.Stdout, os.Stderr)
case *kill >= 0:
return KillProcess(containerUUID, syscall.Signal(*kill), os.Stdout, os.Stderr)
case *list:
return ListProcesses(os.Stdout, os.Stderr)
}
- if containerUUID == "" {
+ if len(containerUUID) != 27 {
log.Printf("usage: %s [options] UUID", prog)
return 1
}
+ var keepstoreLogbuf bufThenWrite
+ var conf ConfigData
+ if *stdinConfig {
+ err := json.NewDecoder(stdin).Decode(&conf)
+ if err != nil {
+ log.Printf("decode stdin: %s", err)
+ return 1
+ }
+ for k, v := range conf.Env {
+ err = os.Setenv(k, v)
+ if err != nil {
+ log.Printf("setenv(%q): %s", k, err)
+ return 1
+ }
+ }
+ if conf.Cluster != nil {
+ // ClusterID is missing from the JSON
+ // representation, but we need it to generate
+ // a valid config file for keepstore, so we
+ // fill it using the container UUID prefix.
+ conf.Cluster.ClusterID = containerUUID[:5]
+ }
+ } else {
+ conf = hpcConfData(containerUUID, *configFile, io.MultiWriter(&keepstoreLogbuf, stderr))
+ }
+
log.Printf("crunch-run %s started", cmd.Version.String())
time.Sleep(*sleep)
arvadosclient.CertFiles = []string{*caCertsPath}
}
+ keepstore, err := startLocalKeepstore(conf, io.MultiWriter(&keepstoreLogbuf, stderr))
+ if err != nil {
+ log.Print(err)
+ return 1
+ }
+ if keepstore != nil {
+ defer keepstore.Process.Kill()
+ }
+
api, err := arvadosclient.MakeArvadosClient()
if err != nil {
log.Printf("%s: %v", containerUUID, err)
}
api.Retries = 8
- kc, kcerr := keepclient.MakeKeepClient(api)
- if kcerr != nil {
- log.Printf("%s: %v", containerUUID, kcerr)
+ kc, err := keepclient.MakeKeepClient(api)
+ if err != nil {
+ log.Printf("%s: %v", containerUUID, err)
return 1
}
kc.BlockCache = &keepclient.BlockCache{MaxBlocks: 2}
return 1
}
+ if keepstore == nil {
+ // Log explanation (if any) for why we're not running
+ // a local keepstore.
+ var buf bytes.Buffer
+ keepstoreLogbuf.SetWriter(&buf)
+ if buf.Len() > 0 {
+ cr.CrunchLog.Printf("%s", strings.TrimSpace(buf.String()))
+ }
+ } else if logWhat := conf.Cluster.Containers.LocalKeepLogsToContainerLog; logWhat == "none" {
+ cr.CrunchLog.Printf("using local keepstore process (pid %d) at %s", keepstore.Process.Pid, os.Getenv("ARVADOS_KEEP_SERVICES"))
+ keepstoreLogbuf.SetWriter(io.Discard)
+ } else {
+ cr.CrunchLog.Printf("using local keepstore process (pid %d) at %s, writing logs to keepstore.txt in log collection", keepstore.Process.Pid, os.Getenv("ARVADOS_KEEP_SERVICES"))
+ logwriter, err := cr.NewLogWriter("keepstore")
+ if err != nil {
+ log.Print(err)
+ return 1
+ }
+ cr.keepstoreLogger = NewThrottledLogger(logwriter)
+
+ var writer io.WriteCloser = cr.keepstoreLogger
+ if logWhat == "errors" {
+ writer = &filterKeepstoreErrorsOnly{WriteCloser: writer}
+ } else if logWhat != "all" {
+ // should have been caught earlier by
+ // dispatcher's config loader
+ log.Printf("invalid value for Containers.LocalKeepLogsToContainerLog: %q", logWhat)
+ return 1
+ }
+ err = keepstoreLogbuf.SetWriter(writer)
+ if err != nil {
+ log.Print(err)
+ return 1
+ }
+ cr.keepstoreLogbuf = &keepstoreLogbuf
+ }
+
switch *runtimeEngine {
case "docker":
cr.executor, err = newDockerExecutor(containerUUID, cr.CrunchLog.Printf, cr.containerWatchdogInterval)
}
defer cr.executor.Close()
+ cr.brokenNodeHook = *brokenNodeHook
+
gwAuthSecret := os.Getenv("GatewayAuthSecret")
os.Unsetenv("GatewayAuthSecret")
if gwAuthSecret == "" {
cr.enableNetwork = *enableNetwork
cr.networkMode = *networkMode
if *cgroupParentSubsystem != "" {
- p := findCgroup(*cgroupParentSubsystem)
+ p, err := findCgroup(*cgroupParentSubsystem)
+ if err != nil {
+ log.Printf("fatal: cgroup parent subsystem: %s", err)
+ return 1
+ }
cr.setCgroupParent = p
cr.expectCgroupParent = p
}
return 0
}
-func loadEnv(rdr io.Reader) error {
- buf, err := ioutil.ReadAll(rdr)
+// Try to load ConfigData in hpc (slurm/lsf) environment. This means
+// loading the cluster config from the specified file and (if that
+// works) getting the runtime_constraints container field from
+// controller to determine # VCPUs so we can calculate KeepBuffers.
+func hpcConfData(uuid string, configFile string, stderr io.Writer) ConfigData {
+ var conf ConfigData
+ conf.Cluster = loadClusterConfigFile(configFile, stderr)
+ if conf.Cluster == nil {
+ // skip loading the container record -- we won't be
+ // able to start local keepstore anyway.
+ return conf
+ }
+ arv, err := arvadosclient.MakeArvadosClient()
+ if err != nil {
+ fmt.Fprintf(stderr, "error setting up arvadosclient: %s\n", err)
+ return conf
+ }
+ arv.Retries = 8
+ var ctr arvados.Container
+ err = arv.Call("GET", "containers", uuid, "", arvadosclient.Dict{"select": []string{"runtime_constraints"}}, &ctr)
+ if err != nil {
+ fmt.Fprintf(stderr, "error getting container record: %s\n", err)
+ return conf
+ }
+ if ctr.RuntimeConstraints.VCPUs > 0 {
+ conf.KeepBuffers = ctr.RuntimeConstraints.VCPUs * conf.Cluster.Containers.LocalKeepBlobBuffersPerVCPU
+ }
+ return conf
+}
+
+// Load cluster config file from given path. If an error occurs, log
+// the error to stderr and return nil.
+func loadClusterConfigFile(path string, stderr io.Writer) *arvados.Cluster {
+ ldr := config.NewLoader(&bytes.Buffer{}, ctxlog.New(stderr, "plain", "info"))
+ ldr.Path = path
+ cfg, err := ldr.Load()
+ if err != nil {
+ fmt.Fprintf(stderr, "could not load config file %s: %s\n", path, err)
+ return nil
+ }
+ cluster, err := cfg.GetCluster("")
+ if err != nil {
+ fmt.Fprintf(stderr, "could not use config file %s: %s\n", path, err)
+ return nil
+ }
+ fmt.Fprintf(stderr, "loaded config file %s\n", path)
+ return cluster
+}
+
+func startLocalKeepstore(configData ConfigData, logbuf io.Writer) (*exec.Cmd, error) {
+ if configData.KeepBuffers < 1 {
+ fmt.Fprintf(logbuf, "not starting a local keepstore process because KeepBuffers=%v in config\n", configData.KeepBuffers)
+ return nil, nil
+ }
+ if configData.Cluster == nil {
+ fmt.Fprint(logbuf, "not starting a local keepstore process because cluster config file was not loaded\n")
+ return nil, nil
+ }
+ for uuid, vol := range configData.Cluster.Volumes {
+ if len(vol.AccessViaHosts) > 0 {
+ fmt.Fprintf(logbuf, "not starting a local keepstore process because a volume (%s) uses AccessViaHosts\n", uuid)
+ return nil, nil
+ }
+ if !vol.ReadOnly && vol.Replication < configData.Cluster.Collections.DefaultReplication {
+ fmt.Fprintf(logbuf, "not starting a local keepstore process because a writable volume (%s) has replication less than Collections.DefaultReplication (%d < %d)\n", uuid, vol.Replication, configData.Cluster.Collections.DefaultReplication)
+ return nil, nil
+ }
+ }
+
+ // Rather than have an alternate way to tell keepstore how
+ // many buffers to use when starting it this way, we just
+ // modify the cluster configuration that we feed it on stdin.
+ configData.Cluster.API.MaxKeepBlobBuffers = configData.KeepBuffers
+
+ ln, err := net.Listen("tcp", "localhost:0")
if err != nil {
- return fmt.Errorf("read stdin: %s", err)
+ return nil, err
}
- var env map[string]string
- err = json.Unmarshal(buf, &env)
+ _, port, err := net.SplitHostPort(ln.Addr().String())
if err != nil {
- return fmt.Errorf("decode stdin: %s", err)
+ ln.Close()
+ return nil, err
}
- for k, v := range env {
- err = os.Setenv(k, v)
+ ln.Close()
+ url := "http://localhost:" + port
+
+ fmt.Fprintf(logbuf, "starting keepstore on %s\n", url)
+
+ var confJSON bytes.Buffer
+ err = json.NewEncoder(&confJSON).Encode(arvados.Config{
+ Clusters: map[string]arvados.Cluster{
+ configData.Cluster.ClusterID: *configData.Cluster,
+ },
+ })
+ if err != nil {
+ return nil, err
+ }
+ cmd := exec.Command("/proc/self/exe", "keepstore", "-config=-")
+ if target, err := os.Readlink(cmd.Path); err == nil && strings.HasSuffix(target, ".test") {
+ // If we're a 'go test' process, running
+ // /proc/self/exe would start the test suite in a
+ // child process, which is not what we want.
+ cmd.Path, _ = exec.LookPath("go")
+ cmd.Args = append([]string{"go", "run", "../../cmd/arvados-server"}, cmd.Args[1:]...)
+ cmd.Env = os.Environ()
+ }
+ cmd.Stdin = &confJSON
+ cmd.Stdout = logbuf
+ cmd.Stderr = logbuf
+ cmd.Env = append(cmd.Env,
+ "GOGC=10",
+ "ARVADOS_SERVICE_INTERNAL_URL="+url)
+ err = cmd.Start()
+ if err != nil {
+ return nil, fmt.Errorf("error starting keepstore process: %w", err)
+ }
+ cmdExited := false
+ go func() {
+ cmd.Wait()
+ cmdExited = true
+ }()
+ ctx, cancel := context.WithDeadline(context.Background(), time.Now().Add(time.Second*10))
+ defer cancel()
+ poll := time.NewTicker(time.Second / 10)
+ defer poll.Stop()
+ client := http.Client{}
+ for range poll.C {
+ testReq, err := http.NewRequestWithContext(ctx, "GET", url+"/_health/ping", nil)
+ testReq.Header.Set("Authorization", "Bearer "+configData.Cluster.ManagementToken)
if err != nil {
- return fmt.Errorf("setenv(%q): %s", k, err)
+ return nil, err
+ }
+ resp, err := client.Do(testReq)
+ if err == nil {
+ resp.Body.Close()
+ if resp.StatusCode == http.StatusOK {
+ break
+ }
+ }
+ if cmdExited {
+ return nil, fmt.Errorf("keepstore child process exited")
+ }
+ if ctx.Err() != nil {
+ return nil, fmt.Errorf("timed out waiting for new keepstore process to report healthy")
}
}
- return nil
+ os.Setenv("ARVADOS_KEEP_SERVICES", url)
+ return cmd, nil
+}
+
+// return current uid, gid, groups in a format suitable for logging:
+// "crunch-run process has uid=1234(arvados) gid=1234(arvados)
+// groups=1234(arvados),114(fuse)"
+func currentUserAndGroups() string {
+ u, err := user.Current()
+ if err != nil {
+ return fmt.Sprintf("error getting current user ID: %s", err)
+ }
+ s := fmt.Sprintf("crunch-run process has uid=%s(%s) gid=%s", u.Uid, u.Username, u.Gid)
+ if g, err := user.LookupGroupId(u.Gid); err == nil {
+ s += fmt.Sprintf("(%s)", g.Name)
+ }
+ s += " groups="
+ if gids, err := u.GroupIds(); err == nil {
+ for i, gid := range gids {
+ if i > 0 {
+ s += ","
+ }
+ s += gid
+ if g, err := user.LookupGroupId(gid); err == nil {
+ s += fmt.Sprintf("(%s)", g.Name)
+ }
+ }
+ }
+ return s
}
projects / arvados.git / blobdiff