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Merge branch '8784-dir-listings'
[arvados.git]
/
doc
/
user
/
cwl
/
bwa-mem
/
bwa-mem-input-local.yml
diff --git
a/doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
b/doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
index 7f8c7bdb728c6d41fb9b5b2024e3a31b02b86540..6fbac268f4ed3b6005e5a49b879f6b6686d0d0f7 100755
(executable)
--- a/
doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
+++ b/
doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
@@
-1,14
+1,18
@@
-#!/usr/bin/env cwl-runner
+#!/usr/bin/env cwltool
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: CC-BY-SA-3.0
+
cwl:tool: bwa-mem.cwl
reference:
class: File
cwl:tool: bwa-mem.cwl
reference:
class: File
-
path
: 19.fasta.bwt
+
location
: 19.fasta.bwt
read_p1:
class: File
read_p1:
class: File
-
path
: HWI-ST1027_129_D0THKACXX.1_1.fastq
+
location
: HWI-ST1027_129_D0THKACXX.1_1.fastq
read_p2:
class: File
read_p2:
class: File
-
path
: HWI-ST1027_129_D0THKACXX.1_2.fastq
+
location
: HWI-ST1027_129_D0THKACXX.1_2.fastq
group_id: arvados_tutorial
sample_id: HWI-ST1027_129
PL: illumina
group_id: arvados_tutorial
sample_id: HWI-ST1027_129
PL: illumina